RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 NRCAMQ92823 1304 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 SYNGAP1Q96PV0 1343 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 ASAP2O43150 1006 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 IFNB1P01574 187 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 HMBSP08397 361 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 PLEKP08567 350 aaPredicted RBP5.85□□□□□ -1.47
VPS13C-209ENST00000560637 H2AFZP0C0S5 128 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 LCP1P13796 627 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 ARF4P18085 180 aaPredicted RBP5.85□□□□□ -1.47
VPS13C-209ENST00000560637 ALDH7A1P49419 539 aaKnown RBP5.85□□□□□ -1.47
VPS13C-209ENST00000560637 SLC26A2P50443 739 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 ATP11AP98196 1134 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 BTG3Q14201 252 aaPredicted RBP5.85□□□□□ -1.47
VPS13C-209ENST00000560637 LIN9Q5TKA1 542 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 RUFY4Q6ZNE9 571 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 H2AFVQ71UI9 128 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 TMTC1Q8IUR5 882 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 VSTM4Q8IW00 320 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 GOLGA6L1Q8N7Z2 621 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 MSANTD4Q8NCY6 345 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 DBF4BQ8NFT6 615 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 LRRC15Q8TF66 581 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 CPA5Q8WXQ8 436 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 MRFAP1L1Q96HT8 127 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 IRX2Q9BZI1 471 aaPredicted RBP5.85□□□□□ -1.47
VPS13C-209ENST00000560637 RAB20Q9NX57 234 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 MYH1P12882 1939 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 M0R2N6 131 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 GPR182O15218 404 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 ARHGAP6O43182 974 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 AP5Z1O43299 807 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 IGFBP4P22692 258 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 GUCY2CP25092 1073 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 CTCFP49711 727 aaPredicted RBP5.84□□□□□ -1.47
VPS13C-209ENST00000560637 TTI2Q6NXR4 508 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 TAF2Q6P1X5 1199 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 ALKBH5Q6P6C2 394 aaKnown RBP5.84□□□□□ -1.47
VPS13C-209ENST00000560637 MPZL3Q6UWV2 235 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 SV2AQ7L0J3 742 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 TMC7Q7Z402 723 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 PEX26Q7Z412 305 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 ACOT1Q86TX2 421 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 KLHL7Q8IXQ5 586 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 RPUSD2Q8IZ73 545 aaKnown RBP5.84□□□□□ -1.47
VPS13C-209ENST00000560637 ST13P5Q8NFI4 369 aaPredicted RBP5.84□□□□□ -1.47
VPS13C-209ENST00000560637 HELQQ8TDG4 1101 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 TATDN2Q93075 761 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 MRRFQ96E11 262 aaKnown RBP5.84□□□□□ -1.47
VPS13C-209ENST00000560637 IL17RAQ96F46 866 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 TMEM169Q96HH4 297 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 HPDLQ96IR7 371 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 GDAP1L1Q96MZ0 367 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 HAUS4Q9H6D7 363 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 CDHR5Q9HBB8 845 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 MORF4L1Q9UBU8 362 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 PCSK1NQ9UHG2 260 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 PACSIN2Q9UNF0 486 aaPredicted RBP5.84□□□□□ -1.47
VPS13C-209ENST00000560637 FRMPD4Q14CM0 1322 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 RPTORQ8N122 1335 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 F5H423 210 aaPredicted RBP5.84□□□□□ -1.47
VPS13C-209ENST00000560637 ATP2A1O14983 1001 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 KLRC4O43908 158 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 RFX1P22670 979 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 BRD2P25440 801 aaKnown RBP5.84□□□□□ -1.47
VPS13C-209ENST00000560637 GNA15P30679 374 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 KCTD19Q17RG1 926 aaPredicted RBP5.84□□□□□ -1.47
VPS13C-209ENST00000560637 MGAT5BQ3V5L5 792 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 GDF6Q6KF10 455 aaPredicted RBP5.84□□□□□ -1.47
VPS13C-209ENST00000560637 NECAB2Q7Z6G3 386 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 CCDC25Q86WR0 208 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 SIX6OS1Q8N1H7 587 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 SAMD3Q8N6K7 520 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 TMEM161BQ8NDZ6 487 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 SEPT8Q92599 483 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 SECISBP2LQ93073 1101 aaKnown RBP5.84□□□□□ -1.47
VPS13C-209ENST00000560637 HAUS1Q96CS2 278 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 CEP63Q96MT8 703 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 MINDY3Q9H8M7 445 aa5.84□□□□□ -1.47
VPS13C-209ENST00000560637 NHEJ1Q9H9Q4 299 aaPredicted RBP5.84□□□□□ -1.47
VPS13C-209ENST00000560637 LACTBL1A8MY62 500 aa5.84□□□□□ -1.48
VPS13C-209ENST00000560637 MSCO60682 206 aa5.84□□□□□ -1.48
VPS13C-209ENST00000560637 LMAN1P49257 510 aa5.84□□□□□ -1.48
VPS13C-209ENST00000560637 KIF11P52732 1056 aa5.84□□□□□ -1.48
VPS13C-209ENST00000560637 TRIM14Q14142 442 aa5.84□□□□□ -1.48
VPS13C-209ENST00000560637 HSP90AA2PQ14568 343 aaPredicted RBP5.84□□□□□ -1.48
VPS13C-209ENST00000560637 PPP6R3Q5H9R7 873 aaPredicted RBP5.84□□□□□ -1.48
VPS13C-209ENST00000560637 CTU1Q7Z7A3 348 aaKnown RBP5.84□□□□□ -1.48
VPS13C-209ENST00000560637 RBM23Q86U06 439 aaKnown RBP5.84□□□□□ -1.48
VPS13C-209ENST00000560637 TMEM130Q8N3G9 435 aa5.84□□□□□ -1.48
VPS13C-209ENST00000560637 ERLEC1Q96DZ1 483 aa5.84□□□□□ -1.48
VPS13C-209ENST00000560637 RUFY1Q96T51 708 aa5.84□□□□□ -1.48
VPS13C-209ENST00000560637 EIF2AQ9BY44 585 aaKnown RBP5.84□□□□□ -1.48
VPS13C-209ENST00000560637 CELF4Q9BZC1 486 aaKnown RBP5.84□□□□□ -1.48
VPS13C-209ENST00000560637 PIDD1Q9HB75 910 aa5.84□□□□□ -1.48
VPS13C-209ENST00000560637 KLHL11Q9NVR0 708 aa5.84□□□□□ -1.48
VPS13C-209ENST00000560637 DBR1Q9UK59 544 aaKnown RBP5.84□□□□□ -1.48
VPS13C-209ENST00000560637 PADI3Q9ULW8 664 aa5.84□□□□□ -1.48
VPS13C-209ENST00000560637 DIS3Q9Y2L1 958 aaKnown RBP5.84□□□□□ -1.48
VPS13C-209ENST00000560637 NOC2LQ9Y3T9 749 aaKnown RBP5.84□□□□□ -1.48
VPS13C-209ENST00000560637 UQCRHLA0A096LP55 91 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms