RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 POU5F1Q01860 360 aaKnown RBP12.16□□□□□ -0.46
USP3-218ENST00000560202 APBA1Q02410 837 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 SURF1Q15526 300 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 ENOX2Q16206 610 aaKnown RBP12.16□□□□□ -0.46
USP3-218ENST00000560202 FAM26DQ5JW98 314 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 DPY19L2P1Q6NXN4 242 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 SV2AQ7L0J3 742 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 TMEM192Q8IY95 271 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 EHBP1Q8NDI1 1231 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 ZNF397Q8NF99 534 aaPredicted RBP12.16□□□□□ -0.46
USP3-218ENST00000560202 MYRIPQ8NFW9 859 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 ZNF516Q92618 1163 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 PANX2Q96RD6 677 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 CGRRF1Q99675 332 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 EDEM3Q9BZQ6 932 aa12.16□□□□□ -0.46
USP3-218ENST00000560202 RPF1Q9H9Y2 349 aaKnown RBP12.16□□□□□ -0.46
USP3-218ENST00000560202 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.16□□□□□ -0.46
USP3-218ENST00000560202 NPTXRO95502 500 aa12.15□□□□□ -0.46
USP3-218ENST00000560202 GRM5P41594 1212 aa12.15□□□□□ -0.46
USP3-218ENST00000560202 CCZ1BP86790 482 aa12.15□□□□□ -0.46
USP3-218ENST00000560202 CCZ1P86791 482 aaPredicted RBP12.15□□□□□ -0.46
USP3-218ENST00000560202 RBM10P98175 930 aaKnown RBP12.15□□□□□ -0.46
USP3-218ENST00000560202 EPC2Q52LR7 807 aa12.15□□□□□ -0.46
USP3-218ENST00000560202 KLHDC7AQ5VTJ3 777 aa12.15□□□□□ -0.46
USP3-218ENST00000560202 LMBRD2Q68DH5 695 aaPredicted RBP12.15□□□□□ -0.46
USP3-218ENST00000560202 TRIM65Q6PJ69 517 aa12.15□□□□□ -0.46
USP3-218ENST00000560202 C15orf39Q6ZRI6 1047 aa12.15□□□□□ -0.46
USP3-218ENST00000560202 CACNA2D4Q7Z3S7 1137 aa12.15□□□□□ -0.46
USP3-218ENST00000560202 LMO3Q8TAP4 145 aa12.15□□□□□ -0.46
USP3-218ENST00000560202 FAM212AQ96EL1 285 aa12.15□□□□□ -0.46
USP3-218ENST00000560202 EIF2AQ9BY44 585 aaKnown RBP12.15□□□□□ -0.46
USP3-218ENST00000560202 INTS2Q9H0H0 1204 aaKnown RBP12.15□□□□□ -0.46
USP3-218ENST00000560202 GANQ9H2C0 597 aa12.15□□□□□ -0.46
USP3-218ENST00000560202 TMX1Q9H3N1 280 aa12.15□□□□□ -0.46
USP3-218ENST00000560202 SIX2Q9NPC8 291 aa12.15□□□□□ -0.46
USP3-218ENST00000560202 ABHD10Q9NUJ1 306 aa12.15□□□□□ -0.46
USP3-218ENST00000560202 CEP72Q9P209 647 aa12.15□□□□□ -0.46
USP3-218ENST00000560202 ST3GAL5Q9UNP4 418 aa12.15□□□□□ -0.46
USP3-218ENST00000560202 COQ4Q9Y3A0 265 aa12.15□□□□□ -0.46
USP3-218ENST00000560202 BRCA2P51587 3418 aa12.15□□□□□ -0.47
USP3-218ENST00000560202 DNAH12Q6ZR08 3092 aa12.14□□□□□ -0.47
USP3-218ENST00000560202 PTPRJQ12913 1337 aa12.14□□□□□ -0.47
USP3-218ENST00000560202 GPR182O15218 404 aa12.14□□□□□ -0.47
USP3-218ENST00000560202 IL18RAPO95256 599 aa12.14□□□□□ -0.47
USP3-218ENST00000560202 C4BPAP04003 597 aaKnown RBP12.14□□□□□ -0.47
USP3-218ENST00000560202 CXCL8P10145 99 aa12.14□□□□□ -0.47
USP3-218ENST00000560202 CKBP12277 381 aa12.14□□□□□ -0.47
USP3-218ENST00000560202 SKILP12757 684 aa12.14□□□□□ -0.47
USP3-218ENST00000560202 MNX1P50219 401 aaPredicted RBP12.14□□□□□ -0.47
USP3-218ENST00000560202 AP3M2P53677 418 aa12.14□□□□□ -0.47
USP3-218ENST00000560202 POLR2FP61218 127 aaKnown RBP12.14□□□□□ -0.47
USP3-218ENST00000560202 NFX1Q12986 1120 aaKnown RBP12.14□□□□□ -0.47
USP3-218ENST00000560202 ZACNQ401N2 412 aa12.14□□□□□ -0.47
USP3-218ENST00000560202 FBXO47Q5MNV8 452 aa12.14□□□□□ -0.47
USP3-218ENST00000560202 ZNF618Q5T7W0 954 aa12.14□□□□□ -0.47
USP3-218ENST00000560202 WDR49Q8IV35 697 aa12.14□□□□□ -0.47
USP3-218ENST00000560202 FAM126BQ8IXS8 530 aa12.14□□□□□ -0.47
USP3-218ENST00000560202 CCDC112Q8NEF3 446 aa12.14□□□□□ -0.47
USP3-218ENST00000560202 OR8K1Q8NGG5 319 aa12.14□□□□□ -0.47
USP3-218ENST00000560202 FAM84AQ96KN4 292 aa12.14□□□□□ -0.47
USP3-218ENST00000560202 ACAP3Q96P50 834 aa12.14□□□□□ -0.47
USP3-218ENST00000560202 DNAJC7Q99615 494 aa12.14□□□□□ -0.47
USP3-218ENST00000560202 BAG1Q99933 345 aaPredicted RBP12.14□□□□□ -0.47
USP3-218ENST00000560202 NLRC4Q9NPP4 1024 aa12.14□□□□□ -0.47
USP3-218ENST00000560202 MROH7Q68CQ1 1323 aa12.14□□□□□ -0.47
USP3-218ENST00000560202 RBAK-RBAKDNI3L0D1 243 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 NRDCO43847 1150 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 UCHL3P15374 230 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 TSR1Q2NL82 804 aaKnown RBP12.13□□□□□ -0.47
USP3-218ENST00000560202 SLC10A6Q3KNW5 377 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 UBXN11Q5T124 520 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 RRAGAQ7L523 313 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 TMEM139Q8IV31 216 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 FBXL13Q8NEE6 735 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 OR5B17Q8NGF7 314 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 TAS1R2Q8TE23 839 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 BAP1Q92560 729 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 SEMA4DQ92854 862 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 OSBPL7Q9BZF2 842 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 TRIM6Q9C030 488 aaPredicted RBP12.13□□□□□ -0.47
USP3-218ENST00000560202 ASB7Q9H672 318 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 AGO3Q9H9G7 860 aaKnown RBP12.13□□□□□ -0.47
USP3-218ENST00000560202 RAB20Q9NX57 234 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 FBXL5Q9UKA1 691 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 SQORQ9Y6N5 450 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 LACTBL1A8MY62 500 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 MEFVO15553 781 aaPredicted RBP12.13□□□□□ -0.47
USP3-218ENST00000560202 LRRN2O75325 713 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 CD4P01730 458 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 GHRP10912 638 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 GJA8P48165 433 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 BIRC3Q13489 604 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 LPIN1Q14693 890 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 DUOXA2Q1HG44 320 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 TDRD10Q5VZ19 366 aaKnown RBP12.13□□□□□ -0.47
USP3-218ENST00000560202 TWF2Q6IBS0 349 aaKnown RBP12.13□□□□□ -0.47
USP3-218ENST00000560202 GJB7Q6PEY0 223 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 TRAF7Q6Q0C0 670 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 SLC39A5Q6ZMH5 540 aa12.13□□□□□ -0.47
USP3-218ENST00000560202 USP38Q8NB14 1042 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms