RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 TSHZ3Q63HK5 1081 aa6.46□□□□□ -1.38
VPS13C-208ENST00000559119 FAM180AQ6UWF9 173 aa6.46□□□□□ -1.38
VPS13C-208ENST00000559119 ZNF572Q7Z3I7 529 aaPredicted RBP6.46□□□□□ -1.38
VPS13C-208ENST00000559119 MAPKAPK5Q8IW41 473 aa6.46□□□□□ -1.38
VPS13C-208ENST00000559119 GPR156Q8NFN8 814 aa6.46□□□□□ -1.38
VPS13C-208ENST00000559119 CAGE1Q8TC20 777 aa6.46□□□□□ -1.38
VPS13C-208ENST00000559119 RIN2Q8WYP3 895 aaPredicted RBP6.46□□□□□ -1.38
VPS13C-208ENST00000559119 IFT22Q9H7X7 185 aa6.46□□□□□ -1.38
VPS13C-208ENST00000559119 MAPRE3Q9UPY8 281 aa6.46□□□□□ -1.38
VPS13C-208ENST00000559119 A0A087X0B3 334 aa6.45□□□□□ -1.38
VPS13C-208ENST00000559119 BPIP17213 487 aa6.45□□□□□ -1.38
VPS13C-208ENST00000559119 ENPP1P22413 925 aa6.45□□□□□ -1.38
VPS13C-208ENST00000559119 FDXRP22570 491 aa6.45□□□□□ -1.38
VPS13C-208ENST00000559119 ELLP55199 621 aaPredicted RBP6.45□□□□□ -1.38
VPS13C-208ENST00000559119 RRP12Q5JTH9 1297 aaKnown RBP6.45□□□□□ -1.38
VPS13C-208ENST00000559119 GJC2Q5T442 439 aaPredicted RBP6.45□□□□□ -1.38
VPS13C-208ENST00000559119 MED25Q71SY5 747 aa6.45□□□□□ -1.38
VPS13C-208ENST00000559119 KIAA0907Q7Z7F0 614 aaPredicted RBP6.45□□□□□ -1.38
VPS13C-208ENST00000559119 TRMT2AQ8IZ69 625 aaKnown RBP6.45□□□□□ -1.38
VPS13C-208ENST00000559119 SIMC1Q8NDZ2 872 aa6.45□□□□□ -1.38
VPS13C-208ENST00000559119 OR7D4Q8NG98 312 aa6.45□□□□□ -1.38
VPS13C-208ENST00000559119 UHRF1Q96T88 793 aaPredicted RBP6.45□□□□□ -1.38
VPS13C-208ENST00000559119 ALOXE3Q9BYJ1 711 aa6.45□□□□□ -1.38
VPS13C-208ENST00000559119 PRDM13Q9H4Q3 707 aa6.45□□□□□ -1.38
VPS13C-208ENST00000559119 BCO1Q9HAY6 547 aa6.45□□□□□ -1.38
VPS13C-208ENST00000559119 ECHS1P30084 290 aa6.44□□□□□ -1.38
VPS13C-208ENST00000559119 PER3P56645 1201 aa6.44□□□□□ -1.38
VPS13C-208ENST00000559119 CCT2P78371 535 aaKnown RBP6.44□□□□□ -1.38
VPS13C-208ENST00000559119 TMEM132CQ8N3T6 1108 aa6.44□□□□□ -1.38
VPS13C-208ENST00000559119 CLRN3Q8NCR9 226 aa6.44□□□□□ -1.38
VPS13C-208ENST00000559119 FUBP3Q96I24 572 aaKnown RBP eCLIP6.44□□□□□ -1.38
VPS13C-208ENST00000559119 TTC1Q99614 292 aa6.44□□□□□ -1.38
VPS13C-208ENST00000559119 KLHL11Q9NVR0 708 aa6.44□□□□□ -1.38
VPS13C-208ENST00000559119 TLK1Q9UKI8 766 aa6.44□□□□□ -1.38
VPS13C-208ENST00000559119 COL11A2P13942 1736 aaPredicted RBP6.43□□□□□ -1.38
VPS13C-208ENST00000559119 NEMP1O14524 444 aa6.43□□□□□ -1.38
VPS13C-208ENST00000559119 ZEB2O60315 1214 aa6.43□□□□□ -1.38
VPS13C-208ENST00000559119 MPLP40238 635 aa6.43□□□□□ -1.38
VPS13C-208ENST00000559119 PTH2RP49190 550 aa6.43□□□□□ -1.38
VPS13C-208ENST00000559119 HNRNPA0Q13151 305 aaKnown RBP6.43□□□□□ -1.38
VPS13C-208ENST00000559119 SP140Q13342 867 aa6.43□□□□□ -1.38
VPS13C-208ENST00000559119 TAF7LQ5H9L4 462 aa6.43□□□□□ -1.38
VPS13C-208ENST00000559119 JAZF1Q86VZ6 243 aa6.43□□□□□ -1.38
VPS13C-208ENST00000559119 DRC7Q8IY82 874 aa6.43□□□□□ -1.38
VPS13C-208ENST00000559119 BOLLQ8N9W6 283 aaKnown RBP6.43□□□□□ -1.38
VPS13C-208ENST00000559119 FBXO18Q8NFZ0 1043 aa6.43□□□□□ -1.38
VPS13C-208ENST00000559119 AUTS2Q8WXX7 1259 aa6.43□□□□□ -1.38
VPS13C-208ENST00000559119 RNPEPQ9H4A4 650 aa6.43□□□□□ -1.38
VPS13C-208ENST00000559119 MOCS1Q9NZB8 636 aa6.43□□□□□ -1.38
VPS13C-208ENST00000559119 MAST3O60307 1309 aa6.43□□□□□ -1.38
VPS13C-208ENST00000559119 POLR2AP24928 1970 aaKnown RBP6.42□□□□□ -1.38
VPS13C-208ENST00000559119 A0A1B0GTW7 788 aa6.42□□□□□ -1.38
VPS13C-208ENST00000559119 ELANEP08246 267 aa6.42□□□□□ -1.38
VPS13C-208ENST00000559119 RAP2AP10114 183 aa6.42□□□□□ -1.38
VPS13C-208ENST00000559119 IL2RBP14784 551 aa6.42□□□□□ -1.38
VPS13C-208ENST00000559119 ALOX15P16050 662 aaPredicted RBP6.42□□□□□ -1.38
VPS13C-208ENST00000559119 ID4P47928 161 aa6.42□□□□□ -1.38
VPS13C-208ENST00000559119 MRPS9P82933 396 aaKnown RBP6.42□□□□□ -1.38
VPS13C-208ENST00000559119 COLEC12Q5KU26 742 aa6.42□□□□□ -1.38
VPS13C-208ENST00000559119 AFMIDQ63HM1 303 aa6.42□□□□□ -1.38
VPS13C-208ENST00000559119 DDX46Q7L014 1031 aaKnown RBP6.42□□□□□ -1.38
VPS13C-208ENST00000559119 NPM2Q86SE8 214 aaKnown RBP6.42□□□□□ -1.38
VPS13C-208ENST00000559119 GPR149Q86SP6 731 aa6.42□□□□□ -1.38
VPS13C-208ENST00000559119 FATE1Q969F0 183 aa6.42□□□□□ -1.38
VPS13C-208ENST00000559119 RNF31Q96EP0 1072 aa6.42□□□□□ -1.38
VPS13C-208ENST00000559119 Q96MF0 132 aa6.42□□□□□ -1.38
VPS13C-208ENST00000559119 ZSWIM1Q9BR11 485 aa6.42□□□□□ -1.38
VPS13C-208ENST00000559119 MRI1Q9BV20 369 aa6.42□□□□□ -1.38
VPS13C-208ENST00000559119 DUSP26Q9BV47 211 aa6.42□□□□□ -1.38
VPS13C-208ENST00000559119 SPATA5L1Q9BVQ7 753 aa6.42□□□□□ -1.38
VPS13C-208ENST00000559119 PNPLA7Q6ZV29 1317 aa6.42□□□□□ -1.38
VPS13C-208ENST00000559119 C1RP00736 705 aa6.41□□□□□ -1.38
VPS13C-208ENST00000559119 POMCP01189 267 aa6.41□□□□□ -1.38
VPS13C-208ENST00000559119 CDK4P11802 303 aa6.41□□□□□ -1.38
VPS13C-208ENST00000559119 ATP5JP18859 108 aa6.41□□□□□ -1.38
VPS13C-208ENST00000559119 B3GNTL1Q67FW5 361 aaPredicted RBP6.41□□□□□ -1.38
VPS13C-208ENST00000559119 Q6ZVL8 140 aa6.41□□□□□ -1.38
VPS13C-208ENST00000559119 PQLC1Q8N2U9 271 aa6.41□□□□□ -1.38
VPS13C-208ENST00000559119 SENP6Q9GZR1 1112 aaPredicted RBP6.41□□□□□ -1.38
VPS13C-208ENST00000559119 QRSL1Q9H0R6 528 aaKnown RBP6.41□□□□□ -1.38
VPS13C-208ENST00000559119 KIAA1586Q9HCI6 787 aa6.41□□□□□ -1.38
VPS13C-208ENST00000559119 GALNT9Q9HCQ5 603 aa6.41□□□□□ -1.38
VPS13C-208ENST00000559119 TBCCD1Q9NVR7 557 aa6.41□□□□□ -1.38
VPS13C-208ENST00000559119 ZBTB21Q9ULJ3 1066 aa6.41□□□□□ -1.38
VPS13C-208ENST00000559119 APOBEC2Q9Y235 224 aaKnown RBP6.41□□□□□ -1.38
VPS13C-208ENST00000559119 ATRNL1Q5VV63 1379 aa6.41□□□□□ -1.38
VPS13C-208ENST00000559119 GOLGA8AA7E2F4 631 aa6.4□□□□□ -1.38
VPS13C-208ENST00000559119 MTHFD2P13995 350 aa6.4□□□□□ -1.38
VPS13C-208ENST00000559119 SREBF1P36956 1147 aa6.4□□□□□ -1.38
VPS13C-208ENST00000559119 OCA2Q04671 838 aa6.4□□□□□ -1.38
VPS13C-208ENST00000559119 SCAPQ12770 1279 aa6.4□□□□□ -1.38
VPS13C-208ENST00000559119 STRN3Q13033 797 aa6.4□□□□□ -1.38
VPS13C-208ENST00000559119 ADRM1Q16186 407 aa6.4□□□□□ -1.38
VPS13C-208ENST00000559119 Q6ZNX1 250 aa6.4□□□□□ -1.38
VPS13C-208ENST00000559119 FAM43AQ8N2R8 423 aa6.4□□□□□ -1.38
VPS13C-208ENST00000559119 TSPEARQ8WU66 669 aa6.4□□□□□ -1.38
VPS13C-208ENST00000559119 TGFBRAP1Q8WUH2 860 aa6.4□□□□□ -1.38
VPS13C-208ENST00000559119 GREM2Q9H772 168 aa6.4□□□□□ -1.38
VPS13C-208ENST00000559119 IFT122Q9HBG6 1241 aa6.4□□□□□ -1.38
VPS13C-208ENST00000559119 CASS4Q9NQ75 786 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms