RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 MAPK13O15264 365 aa12.07□□□□□ -0.48
LDLR-208ENST00000558518 SLC16A4O15374 487 aa12.07□□□□□ -0.48
LDLR-208ENST00000558518 KITP10721 976 aa12.07□□□□□ -0.48
LDLR-208ENST00000558518 PTDSS1P48651 473 aaKnown RBP12.07□□□□□ -0.48
LDLR-208ENST00000558518 VAMP7P51809 220 aa12.07□□□□□ -0.48
LDLR-208ENST00000558518 MARSP56192 900 aaKnown RBP12.07□□□□□ -0.48
LDLR-208ENST00000558518 RHBDL3P58872 404 aa12.07□□□□□ -0.48
LDLR-208ENST00000558518 FASTKD3Q14CZ7 662 aaKnown RBP12.07□□□□□ -0.48
LDLR-208ENST00000558518 RCN1Q15293 331 aa12.07□□□□□ -0.48
LDLR-208ENST00000558518 ATP13A4Q4VNC1 1196 aa12.07□□□□□ -0.48
LDLR-208ENST00000558518 MAGEC3Q8TD91 643 aa12.07□□□□□ -0.48
LDLR-208ENST00000558518 DNAJC9Q8WXX5 260 aa12.07□□□□□ -0.48
LDLR-208ENST00000558518 SNF8Q96H20 258 aa12.07□□□□□ -0.48
LDLR-208ENST00000558518 C11orf70Q9BRQ4 267 aa12.07□□□□□ -0.48
LDLR-208ENST00000558518 PLVAPQ9BX97 442 aa12.07□□□□□ -0.48
LDLR-208ENST00000558518 TRABDQ9H4I3 376 aa12.07□□□□□ -0.48
LDLR-208ENST00000558518 ZNF142P52746 1687 aaPredicted RBP12.07□□□□□ -0.48
LDLR-208ENST00000558518 UNC5CO95185 931 aa12.07□□□□□ -0.48
LDLR-208ENST00000558518 LINGO3P0C6S8 592 aa12.07□□□□□ -0.48
LDLR-208ENST00000558518 RPA3P35244 121 aaPredicted RBP12.07□□□□□ -0.48
LDLR-208ENST00000558518 ICA1Q05084 483 aa12.07□□□□□ -0.48
LDLR-208ENST00000558518 MTMR2Q13614 643 aa12.07□□□□□ -0.48
LDLR-208ENST00000558518 SH3GL3Q99963 347 aa12.07□□□□□ -0.48
LDLR-208ENST00000558518 AMNQ9BXJ7 453 aa12.07□□□□□ -0.48
LDLR-208ENST00000558518 TXLNGYQ9BZA5 131 aa12.07□□□□□ -0.48
LDLR-208ENST00000558518 PAPOLBQ9NRJ5 636 aaKnown RBP12.07□□□□□ -0.48
LDLR-208ENST00000558518 LUC7L3O95232 432 aaKnown RBP12.06□□□□□ -0.48
LDLR-208ENST00000558518 CERKLQ49MI3 558 aaPredicted RBP12.06□□□□□ -0.48
LDLR-208ENST00000558518 GPATCH4Q5T3I0 446 aaKnown RBP12.06□□□□□ -0.48
LDLR-208ENST00000558518 ANKRD35Q8N283 1001 aa12.06□□□□□ -0.48
LDLR-208ENST00000558518 TBC1D16Q8TBP0 767 aa12.06□□□□□ -0.48
LDLR-208ENST00000558518 TBC1D22AQ8WUA7 517 aa12.06□□□□□ -0.48
LDLR-208ENST00000558518 JDP2Q8WYK2 163 aa12.06□□□□□ -0.48
LDLR-208ENST00000558518 BICD1Q96G01 975 aa12.06□□□□□ -0.48
LDLR-208ENST00000558518 TRIM4Q9C037 500 aa12.06□□□□□ -0.48
LDLR-208ENST00000558518 ARMCX1Q9P291 453 aa12.06□□□□□ -0.48
LDLR-208ENST00000558518 GPR75-ASB3A0A0A6YYF3 556 aa12.06□□□□□ -0.48
LDLR-208ENST00000558518 A0A1W2PPM1 405 aa12.06□□□□□ -0.48
LDLR-208ENST00000558518 FAM47DPA6NHR8 397 aa12.06□□□□□ -0.48
LDLR-208ENST00000558518 TAC1P20366 129 aa12.06□□□□□ -0.48
LDLR-208ENST00000558518 CETN2P41208 172 aa12.06□□□□□ -0.48
LDLR-208ENST00000558518 RASSF2P50749 326 aa12.06□□□□□ -0.48
LDLR-208ENST00000558518 PEX3P56589 373 aa12.06□□□□□ -0.48
LDLR-208ENST00000558518 IRX4P78413 519 aa12.06□□□□□ -0.48
LDLR-208ENST00000558518 RASIP1Q5U651 963 aa12.06□□□□□ -0.48
LDLR-208ENST00000558518 STXBP4Q6ZWJ1 553 aa12.06□□□□□ -0.48
LDLR-208ENST00000558518 PDCD7Q8N8D1 485 aaKnown RBP12.06□□□□□ -0.48
LDLR-208ENST00000558518 ART4Q93070 314 aa12.06□□□□□ -0.48
LDLR-208ENST00000558518 TTC1Q99614 292 aa12.06□□□□□ -0.48
LDLR-208ENST00000558518 HERPUD2Q9BSE4 406 aa12.06□□□□□ -0.48
LDLR-208ENST00000558518 MKNK1Q9BUB5 465 aa12.06□□□□□ -0.48
LDLR-208ENST00000558518 MARCOQ9UEW3 520 aaPredicted RBP12.06□□□□□ -0.48
LDLR-208ENST00000558518 SNED1Q8TER0 1413 aa12.06□□□□□ -0.48
LDLR-208ENST00000558518 MEIS2O14770 477 aa12.06□□□□□ -0.48
LDLR-208ENST00000558518 ZBTB48P10074 688 aaPredicted RBP12.06□□□□□ -0.48
LDLR-208ENST00000558518 GM2AP17900 193 aa12.06□□□□□ -0.48
LDLR-208ENST00000558518 NPEPPSP55786 919 aa12.06□□□□□ -0.48
LDLR-208ENST00000558518 SOX10P56693 466 aa12.06□□□□□ -0.48
LDLR-208ENST00000558518 CDR2Q01850 454 aa12.06□□□□□ -0.48
LDLR-208ENST00000558518 CLEC4GQ6UXB4 293 aa12.06□□□□□ -0.48
LDLR-208ENST00000558518 SLC25A41Q8N5S1 370 aa12.06□□□□□ -0.48
LDLR-208ENST00000558518 UTP4Q969X6 686 aaKnown RBP12.06□□□□□ -0.48
LDLR-208ENST00000558518 TTC17Q96AE7 1141 aa12.06□□□□□ -0.48
LDLR-208ENST00000558518 ARHGEF3Q9NR81 526 aa12.06□□□□□ -0.48
LDLR-208ENST00000558518 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.06□□□□□ -0.48
LDLR-208ENST00000558518 CHKBQ9Y259 395 aa12.06□□□□□ -0.48
LDLR-208ENST00000558518 BCORQ6W2J9 1755 aa12.06□□□□□ -0.48
LDLR-208ENST00000558518 KRT36O76013 467 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 EYA4O95677 639 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 WDR4P57081 412 aaKnown RBP12.05□□□□□ -0.48
LDLR-208ENST00000558518 PPP4CP60510 307 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 GPS1Q13098 491 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 FAM102BQ5T8I3 360 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 CGB2Q6NT52 195 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 DPY19L2P1Q6NXN4 242 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 LVRNQ6Q4G3 990 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 CROCCP2Q86T23 111 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 CBWD2Q8IUF1 395 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 SLF2Q8IX21 1173 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 CPXCR1Q8N123 301 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 MAB21L3Q8N8X9 362 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 ARHGEF1Q92888 912 aaKnown RBP12.05□□□□□ -0.48
LDLR-208ENST00000558518 SYT15Q9BQS2 421 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 RNPEPL1Q9HAU8 725 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 KCNMB3Q9NPA1 279 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 AAASQ9NRG9 546 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.05□□□□□ -0.481e-6■■■□□ 15.9
LDLR-208ENST00000558518 CNOT7Q9UIV1 285 aaKnown RBP12.05□□□□□ -0.48
LDLR-208ENST00000558518 CCNL1Q9UK58 526 aaPredicted RBP12.05□□□□□ -0.48
LDLR-208ENST00000558518 C2CD2Q9Y426 696 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 CCDC195A0A1B0GUA6 201 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 F5H6K3 240 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 RASA3Q14644 834 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 ZNF394Q53GI3 561 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 ARHGAP27Q6ZUM4 889 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 TRMT10CQ7L0Y3 403 aaKnown RBP12.05□□□□□ -0.48
LDLR-208ENST00000558518 MAML1Q92585 1016 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 SERPINB12Q96P63 405 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 ZNF577Q9BSK1 485 aa12.05□□□□□ -0.48
LDLR-208ENST00000558518 WNT8AQ9H1J5 351 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms