RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	KIF4A	O95239	1232 aa		14.01	□□□□□ -0.17
SHMT2-223	ENST00000556689	CD72	P21854	359 aa		14.01	□□□□□ -0.17
SHMT2-223	ENST00000556689	RARRES1	P49788	294 aa		14.01	□□□□□ -0.17
SHMT2-223	ENST00000556689	RAB33A	Q14088	237 aa		14.01	□□□□□ -0.17
SHMT2-223	ENST00000556689	RTL10	Q7L3V2	364 aa		14.01	□□□□□ -0.17
SHMT2-223	ENST00000556689	SLC7A14	Q8TBB6	771 aa		14.01	□□□□□ -0.17
SHMT2-223	ENST00000556689	SECISBP2L	Q93073	1101 aa	Known RBP	14.01	□□□□□ -0.17
SHMT2-223	ENST00000556689	PRIMPOL	Q96LW4	560 aa		14.01	□□□□□ -0.17
SHMT2-223	ENST00000556689	TM6SF1	Q9BZW5	370 aa		14.01	□□□□□ -0.17
SHMT2-223	ENST00000556689	POLR3F	Q9H1D9	316 aa	Predicted RBP	14.01	□□□□□ -0.17
SHMT2-223	ENST00000556689	LTB4R2	Q9NPC1	389 aa		14.01	□□□□□ -0.17
SHMT2-223	ENST00000556689	GJB4	Q9NTQ9	266 aa		14.01	□□□□□ -0.17
SHMT2-223	ENST00000556689	PDRG1	Q9NUG6	133 aa		14.01	□□□□□ -0.17
SHMT2-223	ENST00000556689	PRMT7	Q9NVM4	692 aa	Predicted RBP	14.01	□□□□□ -0.17
SHMT2-223	ENST00000556689	SNTG2	Q9NY99	539 aa		14.01	□□□□□ -0.17
SHMT2-223	ENST00000556689	KCNH3	Q9ULD8	1083 aa		14.01	□□□□□ -0.17
SHMT2-223	ENST00000556689	LRRIQ4	A6NIV6	560 aa		14	□□□□□ -0.17
SHMT2-223	ENST00000556689	PTGES	O14684	152 aa		14	□□□□□ -0.17
SHMT2-223	ENST00000556689	ADAM12	O43184	909 aa		14	□□□□□ -0.17
SHMT2-223	ENST00000556689	EPB41L2	O43491	1005 aa	Known RBP	14	□□□□□ -0.17
SHMT2-223	ENST00000556689	POU2F2	P09086	479 aa		14	□□□□□ -0.17
SHMT2-223	ENST00000556689	OR1D2	P34982	312 aa		14	□□□□□ -0.17
SHMT2-223	ENST00000556689	SCRN1	Q12765	414 aa		14	□□□□□ -0.17
SHMT2-223	ENST00000556689	EARS2	Q5JPH6	523 aa	Known RBP	14	□□□□□ -0.17
SHMT2-223	ENST00000556689	PPP4R3CP	Q6ZMV5	832 aa		14	□□□□□ -0.17
SHMT2-223	ENST00000556689	MAEA	Q7L5Y9	396 aa		14	□□□□□ -0.17
SHMT2-223	ENST00000556689	ZBTB8OS	Q8IWT0	167 aa		14	□□□□□ -0.17
SHMT2-223	ENST00000556689	PIGO	Q8TEQ8	1089 aa		14	□□□□□ -0.17
SHMT2-223	ENST00000556689	KXD1	Q9BQD3	176 aa		14	□□□□□ -0.17
SHMT2-223	ENST00000556689	FZD8	Q9H461	694 aa		14	□□□□□ -0.17
SHMT2-223	ENST00000556689	TTC12	Q9H892	705 aa	Predicted RBP	14	□□□□□ -0.17
SHMT2-223	ENST00000556689	ZSCAN32	Q9NX65	697 aa		14	□□□□□ -0.17
SHMT2-223	ENST00000556689	DNMT3B	Q9UBC3	853 aa	Known RBP	14	□□□□□ -0.17
SHMT2-223	ENST00000556689	DOCK8	Q8NF50	2099 aa		14	□□□□□ -0.17
SHMT2-223	ENST00000556689		A0A087WWV3	80 aa		13.99	□□□□□ -0.17
SHMT2-223	ENST00000556689	N4BP3	O15049	544 aa		13.99	□□□□□ -0.17
SHMT2-223	ENST00000556689	CALCRL	Q16602	461 aa		13.99	□□□□□ -0.17
SHMT2-223	ENST00000556689	FAM187B	Q17R55	369 aa		13.99	□□□□□ -0.17
SHMT2-223	ENST00000556689	TMEM132A	Q24JP5	1023 aa		13.99	□□□□□ -0.17
SHMT2-223	ENST00000556689	PABPC1L	Q4VXU2	614 aa	Known RBP	13.99	□□□□□ -0.17
SHMT2-223	ENST00000556689	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	13.99	□□□□□ -0.17
SHMT2-223	ENST00000556689	ZNF852	Q6ZMS4	543 aa		13.99	□□□□□ -0.17
SHMT2-223	ENST00000556689	NPAS3	Q8IXF0	933 aa		13.99	□□□□□ -0.17
SHMT2-223	ENST00000556689	ZBTB44	Q8NCP5	570 aa		13.99	□□□□□ -0.17
SHMT2-223	ENST00000556689	CLDN23	Q96B33	292 aa		13.99	□□□□□ -0.17
SHMT2-223	ENST00000556689	GPRC5C	Q9NQ84	441 aa		13.99	□□□□□ -0.17
SHMT2-223	ENST00000556689	HCFC1R1	Q9NWW0	138 aa		13.99	□□□□□ -0.17
SHMT2-223	ENST00000556689	MRPS17	Q9Y2R5	130 aa	Known RBP	13.99	□□□□□ -0.17
SHMT2-223	ENST00000556689	MRPS23	Q9Y3D9	190 aa	Known RBP	13.99	□□□□□ -0.17
SHMT2-223	ENST00000556689	MTCL1	Q9Y4B5	1905 aa	Known RBP	13.99	□□□□□ -0.17
SHMT2-223	ENST00000556689	CACNA1A	O00555	2505 aa		13.99	□□□□□ -0.17
SHMT2-223	ENST00000556689	STK36	Q9NRP7	1315 aa		13.98	□□□□□ -0.17
SHMT2-223	ENST00000556689	USO1	O60763	962 aa	Known RBP	13.98	□□□□□ -0.17
SHMT2-223	ENST00000556689	ECI2	O75521	394 aa		13.98	□□□□□ -0.17
SHMT2-223	ENST00000556689	RECQL4	O94761	1208 aa		13.98	□□□□□ -0.17
SHMT2-223	ENST00000556689	ATP2B1	P20020	1258 aa		13.98	□□□□□ -0.17
SHMT2-223	ENST00000556689	FGFR3	P22607	806 aa		13.98	□□□□□ -0.17
SHMT2-223	ENST00000556689	KRT2	P35908	639 aa		13.98	□□□□□ -0.17
SHMT2-223	ENST00000556689	TXK	P42681	527 aa		13.98	□□□□□ -0.17
SHMT2-223	ENST00000556689	NR5A1	Q13285	461 aa		13.98	□□□□□ -0.17
SHMT2-223	ENST00000556689	PRPF4B	Q13523	1007 aa	Known RBP	13.98	□□□□□ -0.17
SHMT2-223	ENST00000556689	NAB2	Q15742	525 aa		13.98	□□□□□ -0.17
SHMT2-223	ENST00000556689	MAPK6	Q16659	721 aa		13.98	□□□□□ -0.17
SHMT2-223	ENST00000556689	TPRG1	Q6ZUI0	275 aa		13.98	□□□□□ -0.17
SHMT2-223	ENST00000556689	MCPH1	Q8NEM0	835 aa		13.98	□□□□□ -0.17
SHMT2-223	ENST00000556689	WASF1	Q92558	559 aa		13.98	□□□□□ -0.17
SHMT2-223	ENST00000556689	MCRS1	Q96EZ8	462 aa		13.98	□□□□□ -0.17
SHMT2-223	ENST00000556689	ADPGK	Q9BRR6	497 aa		13.98	□□□□□ -0.17
SHMT2-223	ENST00000556689	C2orf40	Q9H1Z8	148 aa		13.98	□□□□□ -0.17
SHMT2-223	ENST00000556689	PDZD7	Q9H5P4	517 aa		13.98	□□□□□ -0.17
SHMT2-223	ENST00000556689	BRMS1	Q9HCU9	246 aa		13.98	□□□□□ -0.17
SHMT2-223	ENST00000556689	GDE1	Q9NZC3	331 aa		13.98	□□□□□ -0.17
SHMT2-223	ENST00000556689	ORC3	Q9UBD5	711 aa	Predicted RBP	13.98	□□□□□ -0.17
SHMT2-223	ENST00000556689	CACNA1I	Q9P0X4	2223 aa		13.98	□□□□□ -0.17
SHMT2-223	ENST00000556689	FAM205C	A6NFA0	338 aa		13.97	□□□□□ -0.17
SHMT2-223	ENST00000556689	TTLL13P	A6NNM8	815 aa		13.97	□□□□□ -0.17
SHMT2-223	ENST00000556689	PRR5-ARHGAP8	B1AHC4	643 aa		13.97	□□□□□ -0.17
SHMT2-223	ENST00000556689	TBC1D4	O60343	1298 aa		13.97	□□□□□ -0.17
SHMT2-223	ENST00000556689	LILRB5	O75023	590 aa		13.97	□□□□□ -0.17
SHMT2-223	ENST00000556689	B3GAT3	O94766	335 aa		13.97	□□□□□ -0.17
SHMT2-223	ENST00000556689	TARS	P26639	723 aa	Known RBP	13.97	□□□□□ -0.17
SHMT2-223	ENST00000556689	RPS9	P46781	194 aa	Known RBP	13.97	□□□□□ -0.17
SHMT2-223	ENST00000556689	ATXN1	P54253	815 aa	Known RBP	13.97	□□□□□ -0.17
SHMT2-223	ENST00000556689	ARHGAP8	P85298	464 aa		13.97	□□□□□ -0.17
SHMT2-223	ENST00000556689	ADCY1	Q08828	1119 aa		13.97	□□□□□ -0.17
SHMT2-223	ENST00000556689	CDCA2	Q69YH5	1023 aa	Predicted RBP	13.97	□□□□□ -0.17
SHMT2-223	ENST00000556689	NOSTRIN	Q8IVI9	506 aa		13.97	□□□□□ -0.17
SHMT2-223	ENST00000556689	ING5	Q8WYH8	240 aa		13.97	□□□□□ -0.17
SHMT2-223	ENST00000556689	NELL1	Q92832	810 aa		13.97	□□□□□ -0.17
SHMT2-223	ENST00000556689	CNTNAP3B	Q96NU0	1288 aa		13.97	□□□□□ -0.17
SHMT2-223	ENST00000556689	CNTNAP3	Q9BZ76	1288 aa		13.97	□□□□□ -0.17
SHMT2-223	ENST00000556689	PLA2G2F	Q9BZM2	168 aa		13.97	□□□□□ -0.17
SHMT2-223	ENST00000556689	CXCL16	Q9H2A7	254 aa		13.97	□□□□□ -0.17
SHMT2-223	ENST00000556689	EPC1	Q9H2F5	836 aa		13.97	□□□□□ -0.17
SHMT2-223	ENST00000556689	MTRR	Q9UBK8	725 aa		13.97	□□□□□ -0.17
SHMT2-223	ENST00000556689	DAXX	Q9UER7	740 aa	Predicted RBP	13.97	□□□□□ -0.17
SHMT2-223	ENST00000556689	BACE2	Q9Y5Z0	518 aa		13.97	□□□□□ -0.17
SHMT2-223	ENST00000556689	CDY1	Q9Y6F8	540 aa		13.97	□□□□□ -0.17
SHMT2-223	ENST00000556689	TDRD15	B5MCY1	1934 aa	Known RBP	13.96	□□□□□ -0.17
SHMT2-223	ENST00000556689	TMEM189-UBE2V1	I3L0A0	370 aa		13.96	□□□□□ -0.17

Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms