RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 PDILTQ8N807 584 aa22.57■■□□□ 1.2
CCDC88C-210ENST00000555995 IQUBQ8NA54 791 aa22.57■■□□□ 1.2
CCDC88C-210ENST00000555995 SMRP1Q8NCR6 262 aa22.57■■□□□ 1.2
CCDC88C-210ENST00000555995 SNX27Q96L92 541 aa22.57■■□□□ 1.2
CCDC88C-210ENST00000555995 POP1Q99575 1024 aaKnown RBP22.57■■□□□ 1.2
CCDC88C-210ENST00000555995 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP22.57■■□□□ 1.2
CCDC88C-210ENST00000555995 BARX2Q9UMQ3 279 aaPredicted RBP22.57■■□□□ 1.2
CCDC88C-210ENST00000555995 PDCD11Q14690 1871 aaKnown RBP22.57■■□□□ 1.2
CCDC88C-210ENST00000555995 XIRP2A4UGR9 3374 aa22.56■■□□□ 1.2
CCDC88C-210ENST00000555995 MBTPS2O43462 519 aa22.56■■□□□ 1.2
CCDC88C-210ENST00000555995 TADA2AO75478 443 aa22.56■■□□□ 1.2
CCDC88C-210ENST00000555995 HARSP12081 509 aaKnown RBP22.56■■□□□ 1.2
CCDC88C-210ENST00000555995 KRT85P78386 507 aa22.56■■□□□ 1.2
CCDC88C-210ENST00000555995 DLX2Q07687 328 aaPredicted RBP22.56■■□□□ 1.2
CCDC88C-210ENST00000555995 KCNC3Q14003 757 aa22.56■■□□□ 1.2
CCDC88C-210ENST00000555995 SMAD2Q15796 467 aaKnown RBP22.56■■□□□ 1.2
CCDC88C-210ENST00000555995 USP41Q3LFD5 358 aa22.56■■□□□ 1.2
CCDC88C-210ENST00000555995 FOXD4L6Q3SYB3 417 aaPredicted RBP22.56■■□□□ 1.2
CCDC88C-210ENST00000555995 XKR4Q5GH76 650 aa22.56■■□□□ 1.2
CCDC88C-210ENST00000555995 FOXD4L3Q6VB84 417 aaPredicted RBP22.56■■□□□ 1.2
CCDC88C-210ENST00000555995 PPP1R10Q96QC0 940 aaKnown RBP22.56■■□□□ 1.2
CCDC88C-210ENST00000555995 VN1R3Q9BXE9 311 aa22.56■■□□□ 1.2
CCDC88C-210ENST00000555995 OLFML3Q9NRN5 406 aa22.56■■□□□ 1.2
CCDC88C-210ENST00000555995 CLEC1BQ9P126 229 aa22.56■■□□□ 1.2
CCDC88C-210ENST00000555995 DPP7Q9UHL4 492 aa22.56■■□□□ 1.2
CCDC88C-210ENST00000555995 EXOC7Q9UPT5 735 aa22.56■■□□□ 1.2
CCDC88C-210ENST00000555995 TTC28Q96AY4 2481 aa22.55■■□□□ 1.2
CCDC88C-210ENST00000555995 NCOR1O75376 2440 aa22.55■■□□□ 1.2
CCDC88C-210ENST00000555995 MYMKA6NI61 221 aa22.55■■□□□ 1.2
CCDC88C-210ENST00000555995 TMEM189-UBE2V1I3L0A0 370 aa22.55■■□□□ 1.2
CCDC88C-210ENST00000555995 CLASP2O75122 1294 aaKnown RBP22.55■■□□□ 1.2
CCDC88C-210ENST00000555995 ADH1AP07327 375 aa22.55■■□□□ 1.2
CCDC88C-210ENST00000555995 CLTAP09496 248 aa22.55■■□□□ 1.2
CCDC88C-210ENST00000555995 DNM1Q05193 864 aaKnown RBP22.55■■□□□ 1.2
CCDC88C-210ENST00000555995 ANKRD54Q6NXT1 300 aa22.55■■□□□ 1.2
CCDC88C-210ENST00000555995 PDXDC1Q6P996 788 aa22.55■■□□□ 1.2
CCDC88C-210ENST00000555995 SFR1Q86XK3 245 aa22.55■■□□□ 1.2
CCDC88C-210ENST00000555995 CCDC65Q8IXS2 484 aa22.55■■□□□ 1.2
CCDC88C-210ENST00000555995 CEP120Q8N960 986 aa22.55■■□□□ 1.2
CCDC88C-210ENST00000555995 DNAJC19Q96DA6 116 aa22.55■■□□□ 1.2
CCDC88C-210ENST00000555995 DDX27Q96GQ7 796 aaKnown RBP22.55■■□□□ 1.2
CCDC88C-210ENST00000555995 TSPAN18Q96SJ8 248 aa22.55■■□□□ 1.2
CCDC88C-210ENST00000555995 FIZ1Q96SL8 496 aa22.55■■□□□ 1.2
CCDC88C-210ENST00000555995 MRPL44Q9H9J2 332 aaKnown RBP22.55■■□□□ 1.2
CCDC88C-210ENST00000555995 PLEKHA5Q9HAU0 1116 aa22.55■■□□□ 1.2
CCDC88C-210ENST00000555995 CNTN3Q9P232 1028 aa22.55■■□□□ 1.2
CCDC88C-210ENST00000555995 HCFC2Q9Y5Z7 792 aa22.55■■□□□ 1.2
CCDC88C-210ENST00000555995 A0A087X0B3 334 aa22.54■■□□□ 1.2
CCDC88C-210ENST00000555995 SMIM28A0A1B0GU29 152 aa22.54■■□□□ 1.2
CCDC88C-210ENST00000555995 CASTOR2A6NHX0 329 aa22.54■■□□□ 1.2
CCDC88C-210ENST00000555995 EFEMP2O95967 443 aa22.54■■□□□ 1.2
CCDC88C-210ENST00000555995 IDEP14735 1019 aa22.54■■□□□ 1.2
CCDC88C-210ENST00000555995 IL9P15248 144 aa22.54■■□□□ 1.2
CCDC88C-210ENST00000555995 KCNE1P15382 129 aa22.54■■□□□ 1.2
CCDC88C-210ENST00000555995 OSTNP61366 133 aa22.54■■□□□ 1.2
CCDC88C-210ENST00000555995 DSG1Q02413 1049 aa22.54■■□□□ 1.2
CCDC88C-210ENST00000555995 NAB2Q15742 525 aa22.54■■□□□ 1.2
CCDC88C-210ENST00000555995 CLUL1Q15846 466 aa22.54■■□□□ 1.2
CCDC88C-210ENST00000555995 AXDND1Q5T1B0 1012 aaPredicted RBP22.54■■□□□ 1.2
CCDC88C-210ENST00000555995 SLFN12LQ6IEE8 588 aa22.54■■□□□ 1.2
CCDC88C-210ENST00000555995 ALKAL1Q6UXT8 129 aa22.54■■□□□ 1.2
CCDC88C-210ENST00000555995 STXBP4Q6ZWJ1 553 aa22.54■■□□□ 1.2
CCDC88C-210ENST00000555995 PANK2Q9BZ23 570 aa22.54■■□□□ 1.2
CCDC88C-210ENST00000555995 RCOR1Q9UKL0 485 aa22.54■■□□□ 1.2
CCDC88C-210ENST00000555995 PCDHA7Q9UN72 937 aa22.54■■□□□ 1.2
CCDC88C-210ENST00000555995 OGTO15294 1046 aa22.53■■□□□ 1.2
CCDC88C-210ENST00000555995 TRAPPC3O43617 180 aa22.53■■□□□ 1.2
CCDC88C-210ENST00000555995 C1RP00736 705 aa22.53■■□□□ 1.2
CCDC88C-210ENST00000555995 NMT1P30419 496 aaKnown RBP22.53■■□□□ 1.2
CCDC88C-210ENST00000555995 E2F4Q16254 413 aa22.53■■□□□ 1.2
CCDC88C-210ENST00000555995 GLRA4Q5JXX5 417 aa22.53■■□□□ 1.2
CCDC88C-210ENST00000555995 LLGL2Q6P1M3 1020 aa22.53■■□□□ 1.2
CCDC88C-210ENST00000555995 SHC4Q6S5L8 630 aa22.53■■□□□ 1.2
CCDC88C-210ENST00000555995 ZNF720Q7Z2F6 126 aa22.53■■□□□ 1.2
CCDC88C-210ENST00000555995 VN1R2Q8NFZ6 395 aa22.53■■□□□ 1.2
CCDC88C-210ENST00000555995 AUTS2Q8WXX7 1259 aa22.53■■□□□ 1.2
CCDC88C-210ENST00000555995 ZBTB45Q96K62 511 aaPredicted RBP22.53■■□□□ 1.2
CCDC88C-210ENST00000555995 CHST7Q9NS84 486 aa22.53■■□□□ 1.2
CCDC88C-210ENST00000555995 KBTBD4Q9NVX7 518 aa22.53■■□□□ 1.2
CCDC88C-210ENST00000555995 PCDHB13Q9Y5F0 798 aa22.53■■□□□ 1.2
CCDC88C-210ENST00000555995 FRMD3A2A2Y4 597 aa22.52■■□□□ 1.2
CCDC88C-210ENST00000555995 XPOTO43592 962 aaKnown RBP22.52■■□□□ 1.2
CCDC88C-210ENST00000555995 KIF4AO95239 1232 aa22.52■■□□□ 1.2
CCDC88C-210ENST00000555995 KLRC2P26717 231 aa22.52■■□□□ 1.2
CCDC88C-210ENST00000555995 ITIH3Q06033 890 aa22.52■■□□□ 1.2
CCDC88C-210ENST00000555995 HERC4Q5GLZ8 1057 aaPredicted RBP22.52■■□□□ 1.2
CCDC88C-210ENST00000555995 RESP18Q5W5W9 173 aa22.52■■□□□ 1.2
CCDC88C-210ENST00000555995 DCLRE1AQ6PJP8 1040 aa22.52■■□□□ 1.2
CCDC88C-210ENST00000555995 ADHFE1Q8IWW8 467 aa22.52■■□□□ 1.2
CCDC88C-210ENST00000555995 CD302Q8IX05 232 aa22.52■■□□□ 1.2
CCDC88C-210ENST00000555995 DHX58Q96C10 678 aa22.52■■□□□ 1.2
CCDC88C-210ENST00000555995 SPATA32Q96LK8 384 aa22.52■■□□□ 1.2
CCDC88C-210ENST00000555995 KLHL5Q96PQ7 755 aa22.52■■□□□ 1.2
CCDC88C-210ENST00000555995 SCAND2PQ9GZW5 306 aaPredicted RBP22.52■■□□□ 1.2
CCDC88C-210ENST00000555995 PANK4Q9NVE7 773 aa22.52■■□□□ 1.2
CCDC88C-210ENST00000555995 FNIP2Q9P278 1114 aa22.52■■□□□ 1.2
CCDC88C-210ENST00000555995 LILRB3O75022 631 aa22.51■■□□□ 1.19
CCDC88C-210ENST00000555995 RPL9P32969 192 aaKnown RBP22.51■■□□□ 1.19
CCDC88C-210ENST00000555995 PPP2R3AQ06190 1150 aa22.51■■□□□ 1.19
CCDC88C-210ENST00000555995 POSTNQ15063 836 aa22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms