RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 VPS16Q9H269 839 aa12.14□□□□□ -0.47
SHMT2-220ENST00000555634 NDST4Q9H3R1 872 aa12.14□□□□□ -0.47
SHMT2-220ENST00000555634 NXF3Q9H4D5 531 aaKnown RBP12.14□□□□□ -0.47
SHMT2-220ENST00000555634 ASB7Q9H672 318 aa12.14□□□□□ -0.47
SHMT2-220ENST00000555634 MMRN2Q9H8L6 949 aa12.14□□□□□ -0.47
SHMT2-220ENST00000555634 AGO3Q9H9G7 860 aaKnown RBP12.14□□□□□ -0.47
SHMT2-220ENST00000555634 SLC38A7Q9NVC3 462 aa12.14□□□□□ -0.47
SHMT2-220ENST00000555634 IFNKQ9P0W0 207 aa12.14□□□□□ -0.47
SHMT2-220ENST00000555634 CPSF3Q9UKF6 684 aaKnown RBP12.14□□□□□ -0.47
SHMT2-220ENST00000555634 USP20Q9Y2K6 914 aa12.14□□□□□ -0.47
SHMT2-220ENST00000555634 DERAQ9Y315 318 aa12.14□□□□□ -0.47
SHMT2-220ENST00000555634 IPPQ9Y573 584 aa12.14□□□□□ -0.47
SHMT2-220ENST00000555634 NR2E3Q9Y5X4 410 aa12.14□□□□□ -0.47
SHMT2-220ENST00000555634 TTLL13PA6NNM8 815 aa12.13□□□□□ -0.47
SHMT2-220ENST00000555634 P4HA2O15460 535 aa12.13□□□□□ -0.47
SHMT2-220ENST00000555634 RECQL4O94761 1208 aa12.13□□□□□ -0.47
SHMT2-220ENST00000555634 BAIAP3O94812 1187 aa12.13□□□□□ -0.47
SHMT2-220ENST00000555634 AMHP03971 560 aa12.13□□□□□ -0.47
SHMT2-220ENST00000555634 ADRB2P07550 413 aa12.13□□□□□ -0.47
SHMT2-220ENST00000555634 PIK3CAP42336 1068 aa12.13□□□□□ -0.47
SHMT2-220ENST00000555634 KCNJ6P48051 423 aa12.13□□□□□ -0.47
SHMT2-220ENST00000555634 FPGSQ05932 587 aa12.13□□□□□ -0.47
SHMT2-220ENST00000555634 KCNH2Q12809 1159 aa12.13□□□□□ -0.47
SHMT2-220ENST00000555634 TRIM14Q14142 442 aa12.13□□□□□ -0.47
SHMT2-220ENST00000555634 PSRC1Q6PGN9 363 aaPredicted RBP12.13□□□□□ -0.47
SHMT2-220ENST00000555634 GLB1LQ6UWU2 654 aa12.13□□□□□ -0.47
SHMT2-220ENST00000555634 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.13□□□□□ -0.47
SHMT2-220ENST00000555634 MRFAP1L1Q96HT8 127 aa12.13□□□□□ -0.47
SHMT2-220ENST00000555634 MFSD14AQ96MC6 490 aa12.13□□□□□ -0.47
SHMT2-220ENST00000555634 MED15Q96RN5 788 aa12.13□□□□□ -0.47
SHMT2-220ENST00000555634 EIF2AQ9BY44 585 aaKnown RBP12.13□□□□□ -0.47
SHMT2-220ENST00000555634 WNT8AQ9H1J5 351 aa12.13□□□□□ -0.47
SHMT2-220ENST00000555634 RGS18Q9NS28 235 aa12.13□□□□□ -0.47
SHMT2-220ENST00000555634 GIT1Q9Y2X7 761 aa12.13□□□□□ -0.47
SHMT2-220ENST00000555634 C2CD2Q9Y426 696 aa12.13□□□□□ -0.47
SHMT2-220ENST00000555634 UMODL1Q5DID0 1318 aa12.12□□□□□ -0.47
SHMT2-220ENST00000555634 FNDC1Q4ZHG4 1894 aaPredicted RBP12.12□□□□□ -0.47
SHMT2-220ENST00000555634 DNAH12Q6ZR08 3092 aa12.12□□□□□ -0.47
SHMT2-220ENST00000555634 A0A0U1RQF3 1178 aa12.12□□□□□ -0.47
SHMT2-220ENST00000555634 A0A1B0GTH6 734 aa12.12□□□□□ -0.47
SHMT2-220ENST00000555634 ABHD14A-ACY1A0A1B0GW23 586 aa12.12□□□□□ -0.47
SHMT2-220ENST00000555634 GTPBP10A4D1E9 387 aaKnown RBP12.12□□□□□ -0.47
SHMT2-220ENST00000555634 ABLIM1O14639 778 aa12.12□□□□□ -0.47
SHMT2-220ENST00000555634 NRDCO43847 1150 aa12.12□□□□□ -0.47
SHMT2-220ENST00000555634 NBNO60934 754 aa12.12□□□□□ -0.47
SHMT2-220ENST00000555634 EOMESO95936 686 aa12.12□□□□□ -0.47
SHMT2-220ENST00000555634 CXCL10P02778 98 aa12.12□□□□□ -0.47
SHMT2-220ENST00000555634 TRIM49P0CI25 452 aa12.12□□□□□ -0.47
SHMT2-220ENST00000555634 TRIM49CP0CI26 452 aa12.12□□□□□ -0.47
SHMT2-220ENST00000555634 TFAMQ00059 246 aaKnown RBP12.12□□□□□ -0.47
SHMT2-220ENST00000555634 TRPC3Q13507 836 aa12.12□□□□□ -0.47
SHMT2-220ENST00000555634 MBTPS1Q14703 1052 aa12.12□□□□□ -0.47
SHMT2-220ENST00000555634 ENOX2Q16206 610 aaKnown RBP12.12□□□□□ -0.47
SHMT2-220ENST00000555634 DUOXA2Q1HG44 320 aa12.12□□□□□ -0.47
SHMT2-220ENST00000555634 KRT39Q6A163 491 aa12.12□□□□□ -0.47
SHMT2-220ENST00000555634 TRAF7Q6Q0C0 670 aa12.12□□□□□ -0.47
SHMT2-220ENST00000555634 GBP6Q6ZN66 633 aa12.12□□□□□ -0.47
SHMT2-220ENST00000555634 FMNL3Q8IVF7 1028 aa12.12□□□□□ -0.47
SHMT2-220ENST00000555634 BEST2Q8NFU1 509 aa12.12□□□□□ -0.47
SHMT2-220ENST00000555634 PARD3BQ8TEW8 1205 aa12.12□□□□□ -0.47
SHMT2-220ENST00000555634 SLC35C1Q96A29 364 aa12.12□□□□□ -0.47
SHMT2-220ENST00000555634 KIF12Q96FN5 646 aa12.12□□□□□ -0.47
SHMT2-220ENST00000555634 SNX27Q96L92 541 aa12.12□□□□□ -0.47
SHMT2-220ENST00000555634 FAM81BQ96LP2 452 aa12.12□□□□□ -0.47
SHMT2-220ENST00000555634 MRPL9Q9BYD2 267 aaKnown RBP12.12□□□□□ -0.47
SHMT2-220ENST00000555634 XPO4Q9C0E2 1151 aaKnown RBP12.12□□□□□ -0.47
SHMT2-220ENST00000555634 DNAI2Q9GZS0 605 aa12.12□□□□□ -0.47
SHMT2-220ENST00000555634 TSPYL2Q9H2G4 693 aaPredicted RBP12.12□□□□□ -0.47
SHMT2-220ENST00000555634 RSAD1Q9HA92 442 aa12.12□□□□□ -0.47
SHMT2-220ENST00000555634 TMEM8AQ9HCN3 771 aa12.12□□□□□ -0.47
SHMT2-220ENST00000555634 TMEM161AQ9NX61 479 aa12.12□□□□□ -0.47
SHMT2-220ENST00000555634 SNTG2Q9NY99 539 aa12.12□□□□□ -0.47
SHMT2-220ENST00000555634 GCNT4Q9P109 453 aa12.12□□□□□ -0.47
SHMT2-220ENST00000555634 DAAM1Q9Y4D1 1078 aa12.12□□□□□ -0.47
SHMT2-220ENST00000555634 PCDHB7Q9Y5E2 793 aa12.12□□□□□ -0.47
SHMT2-220ENST00000555634 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.12□□□□□ -0.47
SHMT2-220ENST00000555634 FAM189A1O60320 539 aa12.11□□□□□ -0.47
SHMT2-220ENST00000555634 ZNF623O75123 536 aa12.11□□□□□ -0.47
SHMT2-220ENST00000555634 P4HA1P13674 534 aa12.11□□□□□ -0.47
SHMT2-220ENST00000555634 ATF7P17544 494 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-220ENST00000555634 TRIM21P19474 475 aaKnown RBP12.11□□□□□ -0.47
SHMT2-220ENST00000555634 RFX1P22670 979 aa12.11□□□□□ -0.47
SHMT2-220ENST00000555634 CDC25BP30305 580 aa12.11□□□□□ -0.47
SHMT2-220ENST00000555634 TNFSF9P41273 254 aa12.11□□□□□ -0.47
SHMT2-220ENST00000555634 FMO5P49326 533 aa12.11□□□□□ -0.47
SHMT2-220ENST00000555634 ZNF75DP51815 510 aa12.11□□□□□ -0.47
SHMT2-220ENST00000555634 DSC3Q14574 896 aa12.11□□□□□ -0.47
SHMT2-220ENST00000555634 EXOC3L4Q17RC7 722 aa12.11□□□□□ -0.47
SHMT2-220ENST00000555634 SEZ6Q53EL9 994 aa12.11□□□□□ -0.47
SHMT2-220ENST00000555634 WDR44Q5JSH3 913 aa12.11□□□□□ -0.47
SHMT2-220ENST00000555634 PPFIBP1Q86W92 1011 aa12.11□□□□□ -0.47
SHMT2-220ENST00000555634 ECHDC2Q86YB7 292 aa12.11□□□□□ -0.47
SHMT2-220ENST00000555634 IRF2BP1Q8IU81 584 aa12.11□□□□□ -0.47
SHMT2-220ENST00000555634 NPAS4Q8IUM7 802 aa12.11□□□□□ -0.47
SHMT2-220ENST00000555634 CEP120Q8N960 986 aa12.11□□□□□ -0.47
SHMT2-220ENST00000555634 DBF4BQ8NFT6 615 aa12.11□□□□□ -0.47
SHMT2-220ENST00000555634 ZNF560Q96MR9 790 aa12.11□□□□□ -0.47
SHMT2-220ENST00000555634 FAM193BQ96PV7 902 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-220ENST00000555634 HSD3B7Q9H2F3 369 aa12.11□□□□□ -0.47
SHMT2-220ENST00000555634 ELAC1Q9H777 363 aaKnown RBP12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms