RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 MYO1AQ9UBC5 1043 aa12.17□□□□□ -0.46
SHMT2-216ENST00000554975 PUF60Q9UHX1 559 aaKnown RBP12.17□□□□□ -0.46
SHMT2-216ENST00000554975 DBR1Q9UK59 544 aaKnown RBP12.17□□□□□ -0.46
SHMT2-216ENST00000554975 ST3GAL5Q9UNP4 418 aa12.17□□□□□ -0.46
SHMT2-216ENST00000554975 COL4A3Q01955 1670 aa12.16□□□□□ -0.46
SHMT2-216ENST00000554975 SMIM35A0A1B0GVV1 85 aa12.16□□□□□ -0.46
SHMT2-216ENST00000554975 KRBA1A5PL33 1030 aa12.16□□□□□ -0.46
SHMT2-216ENST00000554975 MAFGO15525 162 aa12.16□□□□□ -0.46
SHMT2-216ENST00000554975 RPS6KA5O75582 802 aa12.16□□□□□ -0.46
SHMT2-216ENST00000554975 PRKCSHP14314 528 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-216ENST00000554975 SREBF1P36956 1147 aa12.16□□□□□ -0.46
SHMT2-216ENST00000554975 DNM2P50570 870 aa12.16□□□□□ -0.46
SHMT2-216ENST00000554975 FAM189BP81408 668 aa12.16□□□□□ -0.46
SHMT2-216ENST00000554975 PSMD2Q13200 908 aa12.16□□□□□ -0.46
SHMT2-216ENST00000554975 DSC3Q14574 896 aa12.16□□□□□ -0.46
SHMT2-216ENST00000554975 KMT5BQ4FZB7 885 aa12.16□□□□□ -0.46
SHMT2-216ENST00000554975 MTHFD1LQ6UB35 978 aa12.16□□□□□ -0.46
SHMT2-216ENST00000554975 SYT10Q6XYQ8 523 aa12.16□□□□□ -0.46
SHMT2-216ENST00000554975 SV2BQ7L1I2 683 aa12.16□□□□□ -0.46
SHMT2-216ENST00000554975 FAM228AQ86W67 206 aa12.16□□□□□ -0.46
SHMT2-216ENST00000554975 KCTD17Q8N5Z5 321 aa12.16□□□□□ -0.46
SHMT2-216ENST00000554975 MNS1Q8NEH6 495 aa12.16□□□□□ -0.46
SHMT2-216ENST00000554975 LARP4BQ92615 738 aaKnown RBP12.16□□□□□ -0.46
SHMT2-216ENST00000554975 ZNF558Q96NG5 402 aa12.16□□□□□ -0.46
SHMT2-216ENST00000554975 RTP3Q9BQQ7 232 aa12.16□□□□□ -0.46
SHMT2-216ENST00000554975 ATP6V0A4Q9HBG4 840 aa12.16□□□□□ -0.46
SHMT2-216ENST00000554975 CYP26B1Q9NR63 512 aa12.16□□□□□ -0.46
SHMT2-216ENST00000554975 KCNH7Q9NS40 1196 aa12.16□□□□□ -0.46
SHMT2-216ENST00000554975 C1orf112Q9NSG2 853 aa12.16□□□□□ -0.46
SHMT2-216ENST00000554975 TMEM161AQ9NX61 479 aa12.16□□□□□ -0.46
SHMT2-216ENST00000554975 LRWD1Q9UFC0 647 aa12.16□□□□□ -0.46
SHMT2-216ENST00000554975 DUSP12Q9UNI6 340 aa12.16□□□□□ -0.46
SHMT2-216ENST00000554975 USTQ9Y2C2 406 aa12.16□□□□□ -0.46
SHMT2-216ENST00000554975 NT5C1B-RDH14C9J2C7 533 aa12.15□□□□□ -0.46
SHMT2-216ENST00000554975 DDX39AO00148 427 aaKnown RBP12.15□□□□□ -0.46
SHMT2-216ENST00000554975 KLRC4O43908 158 aa12.15□□□□□ -0.46
SHMT2-216ENST00000554975 KIF5CO60282 957 aa12.15□□□□□ -0.46
SHMT2-216ENST00000554975 IPO7O95373 1038 aaKnown RBP12.15□□□□□ -0.46
SHMT2-216ENST00000554975 RPLP2P05387 115 aaKnown RBP12.15□□□□□ -0.46
SHMT2-216ENST00000554975 PRCPP42785 496 aa12.15□□□□□ -0.46
SHMT2-216ENST00000554975 CLK2P49760 499 aaKnown RBP12.15□□□□□ -0.46
SHMT2-216ENST00000554975 LRRC63Q05C16 580 aa12.15□□□□□ -0.46
SHMT2-216ENST00000554975 TDGQ13569 410 aa12.15□□□□□ -0.46
SHMT2-216ENST00000554975 SMC1AQ14683 1233 aaKnown RBP12.15□□□□□ -0.46
SHMT2-216ENST00000554975 RSPO4Q2I0M5 234 aaPredicted RBP12.15□□□□□ -0.46
SHMT2-216ENST00000554975 CEP55Q53EZ4 464 aa12.15□□□□□ -0.46
SHMT2-216ENST00000554975 HAUS3Q68CZ6 603 aa12.15□□□□□ -0.46
SHMT2-216ENST00000554975 CYP26C1Q6V0L0 522 aa12.15□□□□□ -0.46
SHMT2-216ENST00000554975 UNC13DQ70J99 1090 aa12.15□□□□□ -0.46
SHMT2-216ENST00000554975 SLC39A11Q8N1S5 342 aa12.15□□□□□ -0.46
SHMT2-216ENST00000554975 ZNF710Q8N1W2 664 aa12.15□□□□□ -0.46
SHMT2-216ENST00000554975 PLCD3Q8N3E9 789 aa12.15□□□□□ -0.46
SHMT2-216ENST00000554975 EHBP1Q8NDI1 1231 aa12.15□□□□□ -0.46
SHMT2-216ENST00000554975 MED15Q96RN5 788 aa12.15□□□□□ -0.46
SHMT2-216ENST00000554975 TSG101Q99816 390 aa12.15□□□□□ -0.46
SHMT2-216ENST00000554975 HINFPQ9BQA5 517 aa12.15□□□□□ -0.46
SHMT2-216ENST00000554975 TMEM117Q9H0C3 514 aa12.15□□□□□ -0.46
SHMT2-216ENST00000554975 JPH1Q9HDC5 661 aaPredicted RBP12.15□□□□□ -0.46
SHMT2-216ENST00000554975 ZNHIT6Q9NWK9 470 aaKnown RBP12.15□□□□□ -0.46
SHMT2-216ENST00000554975 FBXL21Q9UKT6 434 aa12.15□□□□□ -0.46
SHMT2-216ENST00000554975 ADAMTS3O15072 1205 aa12.14□□□□□ -0.47
SHMT2-216ENST00000554975 MARCH6O60337 910 aa12.14□□□□□ -0.47
SHMT2-216ENST00000554975 KLRC1P26715 233 aa12.14□□□□□ -0.47
SHMT2-216ENST00000554975 CASQ1P31415 396 aa12.14□□□□□ -0.47
SHMT2-216ENST00000554975 CA8P35219 290 aa12.14□□□□□ -0.47
SHMT2-216ENST00000554975 CCT6AP40227 531 aaKnown RBP12.14□□□□□ -0.47
SHMT2-216ENST00000554975 TMEM119Q4V9L6 283 aa12.14□□□□□ -0.47
SHMT2-216ENST00000554975 CLLU1OSQ5K130 101 aa12.14□□□□□ -0.47
SHMT2-216ENST00000554975 ATAT1Q5SQI0 421 aa12.14□□□□□ -0.47
SHMT2-216ENST00000554975 FKBP15Q5T1M5 1219 aa12.14□□□□□ -0.47
SHMT2-216ENST00000554975 TMC5Q6UXY8 1006 aa12.14□□□□□ -0.47
SHMT2-216ENST00000554975 TMEM173Q86WV6 379 aaPredicted RBP12.14□□□□□ -0.47
SHMT2-216ENST00000554975 POTEDQ86YR6 584 aa12.14□□□□□ -0.47
SHMT2-216ENST00000554975 REXO1L1PQ8IX06 675 aa12.14□□□□□ -0.47
SHMT2-216ENST00000554975 SLFN12Q8IYM2 578 aa12.14□□□□□ -0.47
SHMT2-216ENST00000554975 SMYD4Q8IYR2 804 aaPredicted RBP12.14□□□□□ -0.47
SHMT2-216ENST00000554975 KIAA0319LQ8IZA0 1049 aa12.14□□□□□ -0.47
SHMT2-216ENST00000554975 TXLNBQ8N3L3 684 aa12.14□□□□□ -0.47
SHMT2-216ENST00000554975 NME8Q8N427 588 aa12.14□□□□□ -0.47
SHMT2-216ENST00000554975 ERMNQ8TAM6 284 aa12.14□□□□□ -0.47
SHMT2-216ENST00000554975 SNX29Q8TEQ0 813 aa12.14□□□□□ -0.47
SHMT2-216ENST00000554975 SLC22A17Q8WUG5 538 aa12.14□□□□□ -0.47
SHMT2-216ENST00000554975 RSAD2Q8WXG1 361 aa12.14□□□□□ -0.47
SHMT2-216ENST00000554975 MTMR9Q96QG7 549 aa12.14□□□□□ -0.47
SHMT2-216ENST00000554975 OSMRQ99650 979 aa12.14□□□□□ -0.47
SHMT2-216ENST00000554975 MTRQ99707 1265 aa12.14□□□□□ -0.47
SHMT2-216ENST00000554975 SEMA4AQ9H3S1 761 aa12.14□□□□□ -0.47
SHMT2-216ENST00000554975 KCNK12Q9HB15 430 aa12.14□□□□□ -0.47
SHMT2-216ENST00000554975 BMP2KQ9NSY1 1161 aaPredicted RBP12.14□□□□□ -0.47
SHMT2-216ENST00000554975 TAB2Q9NYJ8 693 aa12.14□□□□□ -0.47
SHMT2-216ENST00000554975 SPG21Q9NZD8 308 aa12.14□□□□□ -0.47
SHMT2-216ENST00000554975 SLC9A2Q9UBY0 812 aa12.14□□□□□ -0.47
SHMT2-216ENST00000554975 DDX25Q9UHL0 483 aaKnown RBP12.14□□□□□ -0.47
SHMT2-216ENST00000554975 TCEAL9Q9UHQ7 104 aa12.14□□□□□ -0.47
SHMT2-216ENST00000554975 GDAQ9Y2T3 454 aa12.14□□□□□ -0.47
SHMT2-216ENST00000554975 MTCL1Q9Y4B5 1905 aaKnown RBP12.13□□□□□ -0.47
SHMT2-216ENST00000554975 EFCAB8A8MWE9 144 aa12.13□□□□□ -0.47
SHMT2-216ENST00000554975 ZBTB42B2RXF5 422 aa12.13□□□□□ -0.47
SHMT2-216ENST00000554975 MEIS1O00470 390 aa12.13□□□□□ -0.47
SHMT2-216ENST00000554975 TBX3O15119 743 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms