RNA–Protein interactions for RNA: ENST00000554971.6

SHOX-204, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHOX, Length 1,902 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-204ENST00000554971 HPS3Q969F9 1004 aa18.84■□□□□ 0.61
SHOX-204ENST00000554971 TRANK1O15050 2925 aa18.84■□□□□ 0.61
SHOX-204ENST00000554971 TARSL2A2RTX5 802 aaKnown RBP18.83■□□□□ 0.6
SHOX-204ENST00000554971 PLS3P13797 630 aa18.83■□□□□ 0.6
SHOX-204ENST00000554971 CD52P31358 61 aa18.83■□□□□ 0.6
SHOX-204ENST00000554971 NAMPTP43490 491 aa18.83■□□□□ 0.6
SHOX-204ENST00000554971 CDC42EP1Q00587 391 aa18.83■□□□□ 0.6
SHOX-204ENST00000554971 FPGSQ05932 587 aa18.83■□□□□ 0.6
SHOX-204ENST00000554971 PLEKHG4Q58EX7 1191 aa18.83■□□□□ 0.6
SHOX-204ENST00000554971 BEND6Q5SZJ8 279 aaPredicted RBP18.83■□□□□ 0.6
SHOX-204ENST00000554971 TSHZ1Q6ZSZ6 1077 aa18.83■□□□□ 0.6
SHOX-204ENST00000554971 IFNLR1Q8IU57 520 aaPredicted RBP18.83■□□□□ 0.6
SHOX-204ENST00000554971 NEK11Q8NG66 645 aa18.83■□□□□ 0.6
SHOX-204ENST00000554971 SECISBP2LQ93073 1101 aaKnown RBP18.83■□□□□ 0.6
SHOX-204ENST00000554971 NFKBIZQ9BYH8 718 aa18.83■□□□□ 0.6
SHOX-204ENST00000554971 PARVGQ9HBI0 331 aa18.83■□□□□ 0.6
SHOX-204ENST00000554971 TTC3P53804 2025 aa18.82■□□□□ 0.6
SHOX-204ENST00000554971 LRRIQ4A6NIV6 560 aa18.82■□□□□ 0.6
SHOX-204ENST00000554971 EDN1P05305 212 aa18.82■□□□□ 0.6
SHOX-204ENST00000554971 KRT18P05783 430 aaKnown RBP18.82■□□□□ 0.6
SHOX-204ENST00000554971 KLK7P49862 253 aa18.82■□□□□ 0.6
SHOX-204ENST00000554971 ITIH3Q06033 890 aa18.82■□□□□ 0.6
SHOX-204ENST00000554971 POU5F1BQ06416 359 aa18.82■□□□□ 0.6
SHOX-204ENST00000554971 DBF4BQ8NFT6 615 aa18.82■□□□□ 0.6
SHOX-204ENST00000554971 SCLT1Q96NL6 688 aa18.82■□□□□ 0.6
SHOX-204ENST00000554971 GDF15Q99988 308 aa18.82■□□□□ 0.6
SHOX-204ENST00000554971 NTPCRQ9BSD7 190 aaKnown RBP18.82■□□□□ 0.6
SHOX-204ENST00000554971 IFIH1Q9BYX4 1025 aaKnown RBP18.82■□□□□ 0.6
SHOX-204ENST00000554971 EPC1Q9H2F5 836 aa18.82■□□□□ 0.6
SHOX-204ENST00000554971 MMRN2Q9H8L6 949 aa18.82■□□□□ 0.6
SHOX-204ENST00000554971 PADI3Q9ULW8 664 aa18.82■□□□□ 0.6
SHOX-204ENST00000554971 JRKLQ9Y4A0 524 aa18.82■□□□□ 0.6
SHOX-204ENST00000554971 SQORQ9Y6N5 450 aa18.82■□□□□ 0.6
SHOX-204ENST00000554971 PJA2O43164 708 aa18.82■□□□□ 0.6
SHOX-204ENST00000554971 TACC1O75410 805 aa18.82■□□□□ 0.6
SHOX-204ENST00000554971 SEC31AO94979 1220 aaKnown RBP18.82■□□□□ 0.6
SHOX-204ENST00000554971 RFC2P35250 354 aa18.82■□□□□ 0.6
SHOX-204ENST00000554971 MBTD1Q05BQ5 628 aa18.82■□□□□ 0.6
SHOX-204ENST00000554971 SMC1AQ14683 1233 aaKnown RBP18.82■□□□□ 0.6
SHOX-204ENST00000554971 TAS1R3Q7RTX0 852 aa18.82■□□□□ 0.6
SHOX-204ENST00000554971 FGFBP2Q9BYJ0 223 aa18.82■□□□□ 0.6
SHOX-204ENST00000554971 C17orf75Q9HAS0 396 aa18.82■□□□□ 0.6
SHOX-204ENST00000554971 IL23AQ9NPF7 189 aa18.82■□□□□ 0.6
SHOX-204ENST00000554971 LUC7LQ9NQ29 371 aaKnown RBP18.82■□□□□ 0.6
SHOX-204ENST00000554971 CEP72Q9P209 647 aa18.82■□□□□ 0.6
SHOX-204ENST00000554971 ARHGAP28Q9P2N2 729 aa18.82■□□□□ 0.6
SHOX-204ENST00000554971 RPS6KA5O75582 802 aa18.81■□□□□ 0.6
SHOX-204ENST00000554971 PARNO95453 639 aaKnown RBP18.81■□□□□ 0.6
SHOX-204ENST00000554971 DMP1Q13316 513 aaPredicted RBP18.81■□□□□ 0.6
SHOX-204ENST00000554971 AMHR2Q16671 573 aa18.81■□□□□ 0.6
SHOX-204ENST00000554971 ODR4Q5SWX8 454 aa18.81■□□□□ 0.6
SHOX-204ENST00000554971 ZNF771Q7L3S4 317 aaPredicted RBP18.81■□□□□ 0.6
SHOX-204ENST00000554971 RNF10Q8N5U6 811 aaKnown RBP18.81■□□□□ 0.6
SHOX-204ENST00000554971 BAP1Q92560 729 aa18.81■□□□□ 0.6
SHOX-204ENST00000554971 RUBCNQ92622 972 aa18.81■□□□□ 0.6
SHOX-204ENST00000554971 IFT74Q96LB3 600 aa18.81■□□□□ 0.6
SHOX-204ENST00000554971 GCOM2Q9BZD3 368 aaPredicted RBP18.81■□□□□ 0.6
SHOX-204ENST00000554971 CCDC113Q9H0I3 377 aa18.81■□□□□ 0.6
SHOX-204ENST00000554971 L1RE1Q9UN81 338 aa18.81■□□□□ 0.6
SHOX-204ENST00000554971 ST3GAL5Q9UNP4 418 aa18.81■□□□□ 0.6
SHOX-204ENST00000554971 PCDHA13Q9Y5I0 950 aa18.81■□□□□ 0.6
SHOX-204ENST00000554971 TTLL13PA6NNM8 815 aa18.8■□□□□ 0.6
SHOX-204ENST00000554971 SASH3O75995 380 aa18.8■□□□□ 0.6
SHOX-204ENST00000554971 FAM13AO94988 1023 aa18.8■□□□□ 0.6
SHOX-204ENST00000554971 TFDP1Q14186 410 aa18.8■□□□□ 0.6
SHOX-204ENST00000554971 CCDC40Q4G0X9 1142 aa18.8■□□□□ 0.6
SHOX-204ENST00000554971 HERC4Q5GLZ8 1057 aaPredicted RBP18.8■□□□□ 0.6
SHOX-204ENST00000554971 PDXDC1Q6P996 788 aa18.8■□□□□ 0.6
SHOX-204ENST00000554971 SFR1Q86XK3 245 aa18.8■□□□□ 0.6
SHOX-204ENST00000554971 MYCT1Q8N699 235 aa18.8■□□□□ 0.6
SHOX-204ENST00000554971 TMEM161BQ8NDZ6 487 aa18.8■□□□□ 0.6
SHOX-204ENST00000554971 SPIRE2Q8WWL2 714 aa18.8■□□□□ 0.6
SHOX-204ENST00000554971 EEF2KMTQ96G04 330 aa18.8■□□□□ 0.6
SHOX-204ENST00000554971 LBHD1Q9BQE6 289 aaPredicted RBP18.8■□□□□ 0.6
SHOX-204ENST00000554971 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.8■□□□□ 0.6
SHOX-204ENST00000554971 LACRTQ9GZZ8 138 aa18.8■□□□□ 0.6
SHOX-204ENST00000554971 DEF6Q9H4E7 631 aa18.8■□□□□ 0.6
SHOX-204ENST00000554971 ZHX3Q9H4I2 956 aa18.8■□□□□ 0.6
SHOX-204ENST00000554971 ERVK-5Q9HDB9 667 aa18.8■□□□□ 0.6
SHOX-204ENST00000554971 ARHGAP20Q9P2F6 1191 aa18.8■□□□□ 0.6
SHOX-204ENST00000554971 LARSQ9P2J5 1176 aaKnown RBP18.8■□□□□ 0.6
SHOX-204ENST00000554971 TRIM10Q9UDY6 481 aa18.8■□□□□ 0.6
SHOX-204ENST00000554971 CCDC169A6NNP5 214 aa18.8■□□□□ 0.6
SHOX-204ENST00000554971 SLC16A4O15374 487 aa18.8■□□□□ 0.6
SHOX-204ENST00000554971 TBCAO75347 108 aaKnown RBP18.8■□□□□ 0.6
SHOX-204ENST00000554971 PHKA2P46019 1235 aa18.8■□□□□ 0.6
SHOX-204ENST00000554971 KIF11P52732 1056 aa18.8■□□□□ 0.6
SHOX-204ENST00000554971 NCKAP1LP55160 1127 aa18.8■□□□□ 0.6
SHOX-204ENST00000554971 PPIGQ13427 754 aaKnown RBP eCLIP18.8■□□□□ 0.6
SHOX-204ENST00000554971 PPP2R5AQ15172 486 aa18.8■□□□□ 0.6
SHOX-204ENST00000554971 MAP9Q49MG5 647 aa18.8■□□□□ 0.6
SHOX-204ENST00000554971 TMEM240Q5SV17 173 aa18.8■□□□□ 0.6
SHOX-204ENST00000554971 CACNA2D4Q7Z3S7 1137 aa18.8■□□□□ 0.6
SHOX-204ENST00000554971 TRIM59Q8IWR1 403 aa18.8■□□□□ 0.6
SHOX-204ENST00000554971 USP38Q8NB14 1042 aa18.8■□□□□ 0.6
SHOX-204ENST00000554971 GLIS3Q8NEA6 775 aa18.8■□□□□ 0.6
SHOX-204ENST00000554971 ACBD3Q9H3P7 528 aa18.8■□□□□ 0.6
SHOX-204ENST00000554971 FAM207AQ9NSI2 230 aaPredicted RBP18.8■□□□□ 0.6
SHOX-204ENST00000554971 USP20Q9Y2K6 914 aa18.8■□□□□ 0.6
SHOX-204ENST00000554971 EYSQ5T1H1 3165 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms