RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 CYP26C1Q6V0L0 522 aa17.58■□□□□ 0.4
CCDC88C-209ENST00000554872 TAS1R1Q7RTX1 841 aa17.58■□□□□ 0.4
CCDC88C-209ENST00000554872 KRI1Q8N9T8 703 aaKnown RBP17.58■□□□□ 0.4
CCDC88C-209ENST00000554872 CMASQ8NFW8 434 aaPredicted RBP17.58■□□□□ 0.4
CCDC88C-209ENST00000554872 RASSF8Q8NHQ8 419 aa17.58■□□□□ 0.4
CCDC88C-209ENST00000554872 HDAC7Q8WUI4 952 aa17.58■□□□□ 0.4
CCDC88C-209ENST00000554872 EPSTI1Q96J88 318 aa17.58■□□□□ 0.4
CCDC88C-209ENST00000554872 SNX27Q96L92 541 aa17.58■□□□□ 0.4
CCDC88C-209ENST00000554872 FBXL18Q96ME1 805 aa17.58■□□□□ 0.4
CCDC88C-209ENST00000554872 FIZ1Q96SL8 496 aa17.58■□□□□ 0.4
CCDC88C-209ENST00000554872 GPR62Q9BZJ7 368 aa17.58■□□□□ 0.4
CCDC88C-209ENST00000554872 EPHX3Q9H6B9 360 aa17.58■□□□□ 0.4
CCDC88C-209ENST00000554872 SFXN1Q9H9B4 322 aa17.58■□□□□ 0.4
CCDC88C-209ENST00000554872 SLC38A7Q9NVC3 462 aa17.58■□□□□ 0.4
CCDC88C-209ENST00000554872 CNTN3Q9P232 1028 aa17.58■□□□□ 0.4
CCDC88C-209ENST00000554872 GDAQ9Y2T3 454 aa17.58■□□□□ 0.4
CCDC88C-209ENST00000554872 NPHP3-ACAD11A0A0J9YXS1 232 aa17.57■□□□□ 0.4
CCDC88C-209ENST00000554872 TEX28O15482 410 aa17.57■□□□□ 0.4
CCDC88C-209ENST00000554872 KIF4AO95239 1232 aa17.57■□□□□ 0.4
CCDC88C-209ENST00000554872 MARCKSP29966 332 aaPredicted RBP17.57■□□□□ 0.4
CCDC88C-209ENST00000554872 CA8P35219 290 aa17.57■□□□□ 0.4
CCDC88C-209ENST00000554872 KYAT1Q16773 422 aa17.57■□□□□ 0.4
CCDC88C-209ENST00000554872 PDXDC1Q6P996 788 aa17.57■□□□□ 0.4
CCDC88C-209ENST00000554872 ELMSAN1Q6PJG2 1045 aa17.57■□□□□ 0.4
CCDC88C-209ENST00000554872 C15orf39Q6ZRI6 1047 aa17.57■□□□□ 0.4
CCDC88C-209ENST00000554872 USP49Q70CQ1 688 aa17.57■□□□□ 0.4
CCDC88C-209ENST00000554872 HAUS6Q7Z4H7 955 aa17.57■□□□□ 0.4
CCDC88C-209ENST00000554872 CEP120Q8N960 986 aa17.57■□□□□ 0.4
CCDC88C-209ENST00000554872 LINC00301Q8NCQ3 95 aa17.57■□□□□ 0.4
CCDC88C-209ENST00000554872 RIPOR3Q96MK2 946 aa17.57■□□□□ 0.4
CCDC88C-209ENST00000554872 PAAF1Q9BRP4 392 aa17.57■□□□□ 0.4
CCDC88C-209ENST00000554872 CXCL16Q9H2A7 254 aa17.57■□□□□ 0.4
CCDC88C-209ENST00000554872 SMIM28A0A1B0GU29 152 aa17.56■□□□□ 0.4
CCDC88C-209ENST00000554872 CASTOR2A6NHX0 329 aa17.56■□□□□ 0.4
CCDC88C-209ENST00000554872 PPP6R2O75170 966 aa17.56■□□□□ 0.4
CCDC88C-209ENST00000554872 TADA2AO75478 443 aa17.56■□□□□ 0.4
CCDC88C-209ENST00000554872 FAM13AO94988 1023 aa17.56■□□□□ 0.4
CCDC88C-209ENST00000554872 YEATS4O95619 227 aa17.56■□□□□ 0.4
CCDC88C-209ENST00000554872 KLRC2P26717 231 aa17.56■□□□□ 0.4
CCDC88C-209ENST00000554872 GTF2BQ00403 316 aa17.56■□□□□ 0.4
CCDC88C-209ENST00000554872 UPP1Q16831 310 aa17.56■□□□□ 0.4
CCDC88C-209ENST00000554872 DCLRE1AQ6PJP8 1040 aa17.56■□□□□ 0.4
CCDC88C-209ENST00000554872 RNF135Q8IUD6 432 aa17.56■□□□□ 0.4
CCDC88C-209ENST00000554872 PIK3R5Q8WYR1 880 aa17.56■□□□□ 0.4
CCDC88C-209ENST00000554872 DDX27Q96GQ7 796 aaKnown RBP17.56■□□□□ 0.4
CCDC88C-209ENST00000554872 ACAP3Q96P50 834 aa17.56■□□□□ 0.4
CCDC88C-209ENST00000554872 PLEKHA5Q9HAU0 1116 aa17.56■□□□□ 0.4
CCDC88C-209ENST00000554872 C11orf16Q9NQ32 467 aa17.56■□□□□ 0.4
CCDC88C-209ENST00000554872 SEL1LQ9UBV2 794 aa17.56■□□□□ 0.4
CCDC88C-209ENST00000554872 DENND4AQ7Z401 1863 aa17.56■□□□□ 0.4
CCDC88C-209ENST00000554872 TRIOO75962 3097 aa17.55■□□□□ 0.4
CCDC88C-209ENST00000554872 CLDN3O15551 220 aa17.55■□□□□ 0.4
CCDC88C-209ENST00000554872 TRAK2O60296 914 aa17.55■□□□□ 0.4
CCDC88C-209ENST00000554872 TBCAO75347 108 aaKnown RBP17.55■□□□□ 0.4
CCDC88C-209ENST00000554872 GLUD1P00367 558 aa17.55■□□□□ 0.4
CCDC88C-209ENST00000554872 ATL3Q6DD88 541 aa17.55■□□□□ 0.4
CCDC88C-209ENST00000554872 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.55■□□□□ 0.4
CCDC88C-209ENST00000554872 CCDC73Q6ZRK6 1079 aa17.55■□□□□ 0.4
CCDC88C-209ENST00000554872 MAP4K3Q8IVH8 894 aa17.55■□□□□ 0.4
CCDC88C-209ENST00000554872 HVCN1Q96D96 273 aa17.55■□□□□ 0.4
CCDC88C-209ENST00000554872 ZNF396Q96N95 335 aaPredicted RBP17.55■□□□□ 0.4
CCDC88C-209ENST00000554872 CLIC6Q96NY7 704 aa17.55■□□□□ 0.4
CCDC88C-209ENST00000554872 TSPAN18Q96SJ8 248 aa17.55■□□□□ 0.4
CCDC88C-209ENST00000554872 TCHPQ9BT92 498 aa17.55■□□□□ 0.4
CCDC88C-209ENST00000554872 TTPALQ9BTX7 342 aa17.55■□□□□ 0.4
CCDC88C-209ENST00000554872 PLEKHA4Q9H4M7 779 aa17.55■□□□□ 0.4
CCDC88C-209ENST00000554872 FOXD4L1Q9NU39 408 aa17.55■□□□□ 0.4
CCDC88C-209ENST00000554872 TBX20Q9UMR3 447 aa17.55■□□□□ 0.4
CCDC88C-209ENST00000554872 USTQ9Y2C2 406 aa17.55■□□□□ 0.4
CCDC88C-209ENST00000554872 NR2E1Q9Y466 385 aa17.55■□□□□ 0.4
CCDC88C-209ENST00000554872 CITO14578 2027 aa17.55■□□□□ 0.4
CCDC88C-209ENST00000554872 MEFVO15553 781 aaPredicted RBP17.54■□□□□ 0.4
CCDC88C-209ENST00000554872 FAM189A1O60320 539 aa17.54■□□□□ 0.4
CCDC88C-209ENST00000554872 KRT18P05783 430 aaKnown RBP17.54■□□□□ 0.4
CCDC88C-209ENST00000554872 ADRB2P07550 413 aa17.54■□□□□ 0.4
CCDC88C-209ENST00000554872 FGFR3P22607 806 aa17.54■□□□□ 0.4
CCDC88C-209ENST00000554872 RPL9P32969 192 aaKnown RBP17.54■□□□□ 0.4
CCDC88C-209ENST00000554872 CACNB1Q02641 598 aaPredicted RBP17.54■□□□□ 0.4
CCDC88C-209ENST00000554872 TMEM31Q5JXX7 168 aa17.54■□□□□ 0.4
CCDC88C-209ENST00000554872 SPECC1Q5M775 1068 aa17.54■□□□□ 0.4
CCDC88C-209ENST00000554872 RTP2Q5QGT7 225 aa17.54■□□□□ 0.4
CCDC88C-209ENST00000554872 RRAGBQ5VZM2 374 aa17.54■□□□□ 0.4
CCDC88C-209ENST00000554872 LILRA6Q6PI73 481 aa17.54■□□□□ 0.4
CCDC88C-209ENST00000554872 GPR149Q86SP6 731 aa17.54■□□□□ 0.4
CCDC88C-209ENST00000554872 MYCT1Q8N699 235 aa17.54■□□□□ 0.4
CCDC88C-209ENST00000554872 ZBTB45Q96K62 511 aaPredicted RBP17.54■□□□□ 0.4
CCDC88C-209ENST00000554872 POMKQ9H5K3 350 aa17.54■□□□□ 0.4
CCDC88C-209ENST00000554872 ANKFY1Q9P2R3 1169 aa17.54■□□□□ 0.4
CCDC88C-209ENST00000554872 CACNG4Q9UBN1 327 aa17.54■□□□□ 0.4
CCDC88C-209ENST00000554872 PDCD11Q14690 1871 aaKnown RBP17.54■□□□□ 0.4
CCDC88C-209ENST00000554872 PLXNA3P51805 1871 aa17.53■□□□□ 0.4
CCDC88C-209ENST00000554872 FRMD3A2A2Y4 597 aa17.53■□□□□ 0.4
CCDC88C-209ENST00000554872 K7ENM7 598 aa17.53■□□□□ 0.4
CCDC88C-209ENST00000554872 C2CD2LO14523 706 aa17.53■□□□□ 0.4
CCDC88C-209ENST00000554872 HNRNPDLO14979 420 aaKnown RBP17.53■□□□□ 0.4
CCDC88C-209ENST00000554872 TRAPPC3O43617 180 aa17.53■□□□□ 0.4
CCDC88C-209ENST00000554872 PPP1R37O75864 691 aa17.53■□□□□ 0.4
CCDC88C-209ENST00000554872 CLTAP09496 248 aa17.53■□□□□ 0.4
CCDC88C-209ENST00000554872 ZSCAN22P10073 491 aaPredicted RBP17.53■□□□□ 0.4
CCDC88C-209ENST00000554872 GAP43P17677 238 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms