RNA–Protein interactions for RNA: ENST00000554437.5

SCFD1-211, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 688 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-211ENST00000554437 RABGGTBP53611 331 aa6.59□□□□□ -1.35
SCFD1-211ENST00000554437 CDC42EP1Q00587 391 aa6.59□□□□□ -1.35
SCFD1-211ENST00000554437 RRP1BQ14684 758 aaKnown RBP6.59□□□□□ -1.35
SCFD1-211ENST00000554437 PPP2R5AQ15172 486 aa6.59□□□□□ -1.35
SCFD1-211ENST00000554437 BMT2Q1RMZ1 405 aa6.59□□□□□ -1.35
SCFD1-211ENST00000554437 RRP12Q5JTH9 1297 aaKnown RBP6.59□□□□□ -1.35
SCFD1-211ENST00000554437 EFCAB12Q6NXP0 572 aa6.59□□□□□ -1.35
SCFD1-211ENST00000554437 GPRIN1Q7Z2K8 1008 aa6.59□□□□□ -1.35
SCFD1-211ENST00000554437 CATIPQ7Z7H3 387 aa6.59□□□□□ -1.35
SCFD1-211ENST00000554437 DRC7Q8IY82 874 aa6.59□□□□□ -1.35
SCFD1-211ENST00000554437 OR52N2Q8NGI0 321 aa6.59□□□□□ -1.35
SCFD1-211ENST00000554437 MNTQ99583 582 aa6.59□□□□□ -1.35
SCFD1-211ENST00000554437 MRI1Q9BV20 369 aa6.59□□□□□ -1.35
SCFD1-211ENST00000554437 METTL14Q9HCE5 456 aaKnown RBP6.59□□□□□ -1.35
SCFD1-211ENST00000554437 POGKQ9P215 609 aa6.59□□□□□ -1.35
SCFD1-211ENST00000554437 KLHL42Q9P2K6 505 aa6.59□□□□□ -1.35
SCFD1-211ENST00000554437 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.59□□□□□ -1.35
SCFD1-211ENST00000554437 PNMA8BQ9ULN7 279 aaPredicted RBP6.59□□□□□ -1.35
SCFD1-211ENST00000554437 TSC22D4Q9Y3Q8 395 aa6.59□□□□□ -1.35
SCFD1-211ENST00000554437 PCDHB1Q9Y5F3 818 aa6.59□□□□□ -1.35
SCFD1-211ENST00000554437 CFAP20Q9Y6A4 193 aaKnown RBP6.59□□□□□ -1.35
SCFD1-211ENST00000554437 PJA2O43164 708 aa6.58□□□□□ -1.36
SCFD1-211ENST00000554437 SGTAO43765 313 aa6.58□□□□□ -1.36
SCFD1-211ENST00000554437 ATP5JP18859 108 aa6.58□□□□□ -1.36
SCFD1-211ENST00000554437 ACRV1P26436 265 aa6.58□□□□□ -1.36
SCFD1-211ENST00000554437 CLRN1P58418 232 aa6.58□□□□□ -1.36
SCFD1-211ENST00000554437 RAP2BP61225 183 aa6.58□□□□□ -1.36
SCFD1-211ENST00000554437 TARDBPQ13148 414 aaKnown RBP eCLIP6.58□□□□□ -1.36
SCFD1-211ENST00000554437 MTM1Q13496 603 aa6.58□□□□□ -1.36
SCFD1-211ENST00000554437 LRRC41Q15345 812 aa6.58□□□□□ -1.36
SCFD1-211ENST00000554437 CDSNQ15517 529 aa6.58□□□□□ -1.36
SCFD1-211ENST00000554437 VPS72Q15906 364 aa6.58□□□□□ -1.36
SCFD1-211ENST00000554437 NFE2Q16621 373 aaPredicted RBP6.58□□□□□ -1.36
SCFD1-211ENST00000554437 DCAF17Q5H9S7 520 aaPredicted RBP6.58□□□□□ -1.36
SCFD1-211ENST00000554437 METTL24Q5JXM2 366 aa6.58□□□□□ -1.36
SCFD1-211ENST00000554437 SPDYAQ5MJ70 313 aa6.58□□□□□ -1.36
SCFD1-211ENST00000554437 USP45Q70EL2 814 aa6.58□□□□□ -1.36
SCFD1-211ENST00000554437 TPH2Q8IWU9 490 aa6.58□□□□□ -1.36
SCFD1-211ENST00000554437 CHPFQ8IZ52 775 aa6.58□□□□□ -1.36
SCFD1-211ENST00000554437 RNF169Q8NCN4 708 aa6.58□□□□□ -1.36
SCFD1-211ENST00000554437 ZFP28Q8NHY6 868 aa6.58□□□□□ -1.36
SCFD1-211ENST00000554437 CLPTM1LQ96KA5 538 aa6.58□□□□□ -1.36
SCFD1-211ENST00000554437 GPR20Q99678 358 aa6.58□□□□□ -1.36
SCFD1-211ENST00000554437 KRTAP23-1A1A580 65 aa6.57□□□□□ -1.36
SCFD1-211ENST00000554437 RFPL1O75677 317 aa6.57□□□□□ -1.36
SCFD1-211ENST00000554437 SCGB1D2O95969 90 aa6.57□□□□□ -1.36
SCFD1-211ENST00000554437 ADRB1P08588 477 aa6.57□□□□□ -1.36
SCFD1-211ENST00000554437 CYP2C19P33261 490 aa6.57□□□□□ -1.36
SCFD1-211ENST00000554437 ATP8B2P98198 1209 aa6.57□□□□□ -1.36
SCFD1-211ENST00000554437 CREMQ03060 361 aa6.57□□□□□ -1.36
SCFD1-211ENST00000554437 USP39Q53GS9 565 aaKnown RBP6.57□□□□□ -1.36
SCFD1-211ENST00000554437 ATXN7L2Q5T6C5 722 aaPredicted RBP6.57□□□□□ -1.36
SCFD1-211ENST00000554437 IFIT1BQ5T764 474 aaKnown RBP6.57□□□□□ -1.36
SCFD1-211ENST00000554437 C1QL3Q5VWW1 255 aa6.57□□□□□ -1.36
SCFD1-211ENST00000554437 OTUD7BQ6GQQ9 843 aa6.57□□□□□ -1.36
SCFD1-211ENST00000554437 GADL1Q6ZQY3 521 aa6.57□□□□□ -1.36
SCFD1-211ENST00000554437 TTC7BQ86TV6 843 aa6.57□□□□□ -1.36
SCFD1-211ENST00000554437 EXTL1Q92935 676 aa6.57□□□□□ -1.36
SCFD1-211ENST00000554437 LRGUKQ96M69 825 aa6.57□□□□□ -1.36
SCFD1-211ENST00000554437 MYOCQ99972 504 aa6.57□□□□□ -1.36
SCFD1-211ENST00000554437 GTPBP4Q9BZE4 634 aaKnown RBP6.57□□□□□ -1.36
SCFD1-211ENST00000554437 NOB1Q9ULX3 412 aaKnown RBP6.57□□□□□ -1.36
SCFD1-211ENST00000554437 XDHP47989 1333 aa6.56□□□□□ -1.36
SCFD1-211ENST00000554437 KLRG2A4D1S0 409 aaPredicted RBP6.56□□□□□ -1.36
SCFD1-211ENST00000554437 OFD1O75665 1012 aa6.56□□□□□ -1.36
SCFD1-211ENST00000554437 CTXN1P60606 82 aa6.56□□□□□ -1.36
SCFD1-211ENST00000554437 DSC2Q02487 901 aa6.56□□□□□ -1.36
SCFD1-211ENST00000554437 RAB39AQ14964 217 aa6.56□□□□□ -1.36
SCFD1-211ENST00000554437 CSRP2Q16527 193 aa6.56□□□□□ -1.36
SCFD1-211ENST00000554437 ATP2B3Q16720 1220 aa6.56□□□□□ -1.36
SCFD1-211ENST00000554437 NRN1LQ496H8 165 aa6.56□□□□□ -1.36
SCFD1-211ENST00000554437 ZNF529Q6P280 563 aa6.56□□□□□ -1.36
SCFD1-211ENST00000554437 C1orf210Q8IVY1 113 aa6.56□□□□□ -1.36
SCFD1-211ENST00000554437 PRR18Q8N4B5 295 aa6.56□□□□□ -1.36
SCFD1-211ENST00000554437 OR10H5Q8NGA6 315 aa6.56□□□□□ -1.36
SCFD1-211ENST00000554437 IFI44Q8TCB0 444 aa6.56□□□□□ -1.36
SCFD1-211ENST00000554437 AURKAIP1Q9NWT8 199 aaPredicted RBP6.56□□□□□ -1.36
SCFD1-211ENST00000554437 PNPLA7Q6ZV29 1317 aa6.55□□□□□ -1.36
SCFD1-211ENST00000554437 AP1G1O43747 822 aa6.55□□□□□ -1.36
SCFD1-211ENST00000554437 POMCP01189 267 aa6.55□□□□□ -1.36
SCFD1-211ENST00000554437 MGAT1P26572 445 aa6.55□□□□□ -1.36
SCFD1-211ENST00000554437 FXR1P51114 621 aaKnown RBP eCLIP6.55□□□□□ -1.36
SCFD1-211ENST00000554437 ZNF280AP59817 542 aaPredicted RBP6.55□□□□□ -1.36
SCFD1-211ENST00000554437 PGS1Q32NB8 556 aa6.55□□□□□ -1.36
SCFD1-211ENST00000554437 NAIF1Q69YI7 327 aaPredicted RBP6.55□□□□□ -1.36
SCFD1-211ENST00000554437 DRICH1Q6PGQ1 229 aaPredicted RBP6.55□□□□□ -1.36
SCFD1-211ENST00000554437 SEM1Q6ZVN7 128 aa6.55□□□□□ -1.36
SCFD1-211ENST00000554437 HTR3DQ70Z44 454 aa6.55□□□□□ -1.36
SCFD1-211ENST00000554437 TMPRSS6Q8IU80 811 aa6.55□□□□□ -1.36
SCFD1-211ENST00000554437 GRAMD1CQ8IYS0 662 aa6.55□□□□□ -1.36
SCFD1-211ENST00000554437 NSUN6Q8TEA1 469 aaKnown RBP6.55□□□□□ -1.36
SCFD1-211ENST00000554437 SH3RF3Q8TEJ3 882 aaPredicted RBP6.55□□□□□ -1.36
SCFD1-211ENST00000554437 MVB12AQ96EY5 273 aa6.55□□□□□ -1.36
SCFD1-211ENST00000554437 PHACTR3Q96KR7 559 aa6.55□□□□□ -1.36
SCFD1-211ENST00000554437 MRGPRX4Q96LA9 322 aa6.55□□□□□ -1.36
SCFD1-211ENST00000554437 MAP3K14Q99558 947 aa6.55□□□□□ -1.36
SCFD1-211ENST00000554437 NDC1Q9BTX1 674 aa6.55□□□□□ -1.36
SCFD1-211ENST00000554437 SLC23A1Q9UHI7 598 aa6.55□□□□□ -1.36
SCFD1-211ENST00000554437 KIAA0391O15091 583 aaKnown RBP6.54□□□□□ -1.36
SCFD1-211ENST00000554437 TSPAN6O43657 245 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms