RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 MRPS23Q9Y3D9 190 aaKnown RBP14.38□□□□□ -0.11
VPS29-211ENST00000553128 CHURC1-FNTBB4DL54 471 aa14.37□□□□□ -0.11
VPS29-211ENST00000553128 LRP3O75074 770 aa14.37□□□□□ -0.11
VPS29-211ENST00000553128 RHOP08100 348 aa14.37□□□□□ -0.11
VPS29-211ENST00000553128 POU2F2P09086 479 aa14.37□□□□□ -0.11
VPS29-211ENST00000553128 OR1D2P34982 312 aa14.37□□□□□ -0.11
VPS29-211ENST00000553128 RFC5P40937 340 aa14.37□□□□□ -0.11
VPS29-211ENST00000553128 FNTBP49356 437 aa14.37□□□□□ -0.11
VPS29-211ENST00000553128 MAMSTRQ6ZN01 415 aa14.37□□□□□ -0.11
VPS29-211ENST00000553128 CCDC148Q8NFR7 591 aa14.37□□□□□ -0.11
VPS29-211ENST00000553128 ASAP3Q8TDY4 903 aa14.37□□□□□ -0.11
VPS29-211ENST00000553128 TCEAL4Q96EI5 215 aa14.37□□□□□ -0.11
VPS29-211ENST00000553128 SLC26A6Q9BXS9 759 aa14.37□□□□□ -0.11
VPS29-211ENST00000553128 RXFP3Q9NSD7 469 aa14.37□□□□□ -0.11
VPS29-211ENST00000553128 C2orf42Q9NWW7 574 aa14.37□□□□□ -0.11
VPS29-211ENST00000553128 COL4A2P08572 1712 aa14.37□□□□□ -0.11
VPS29-211ENST00000553128 CEP295Q9C0D2 2601 aa14.36□□□□□ -0.11
VPS29-211ENST00000553128 CCDC196A0A1B0GTZ2 297 aa14.36□□□□□ -0.11
VPS29-211ENST00000553128 PTGESO14684 152 aa14.36□□□□□ -0.11
VPS29-211ENST00000553128 ASAP2O43150 1006 aa14.36□□□□□ -0.11
VPS29-211ENST00000553128 YWHABP31946 246 aaKnown RBP14.36□□□□□ -0.11
VPS29-211ENST00000553128 NLRP5P59047 1200 aa14.36□□□□□ -0.11
VPS29-211ENST00000553128 PPP2R5CQ13362 524 aa14.36□□□□□ -0.11
VPS29-211ENST00000553128 TUSC3Q13454 348 aa14.36□□□□□ -0.11
VPS29-211ENST00000553128 CAPSQ13938 189 aa14.36□□□□□ -0.11
VPS29-211ENST00000553128 RAB33AQ14088 237 aa14.36□□□□□ -0.11
VPS29-211ENST00000553128 CCDC6Q16204 474 aa14.36□□□□□ -0.11
VPS29-211ENST00000553128 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.36□□□□□ -0.11
VPS29-211ENST00000553128 DNASE1L2Q92874 299 aa14.36□□□□□ -0.11
VPS29-211ENST00000553128 ELSPBP1Q96BH3 223 aa14.36□□□□□ -0.11
VPS29-211ENST00000553128 LXNQ9BS40 222 aa14.36□□□□□ -0.11
VPS29-211ENST00000553128 GDE1Q9NZC3 331 aa14.36□□□□□ -0.11
VPS29-211ENST00000553128 RGL1Q9NZL6 768 aa14.36□□□□□ -0.11
VPS29-211ENST00000553128 VWA8A3KMH1 1905 aa14.36□□□□□ -0.11
VPS29-211ENST00000553128 NCANO14594 1321 aa14.36□□□□□ -0.11
VPS29-211ENST00000553128 NID2Q14112 1375 aa14.35□□□□□ -0.11
VPS29-211ENST00000553128 FAM208BQ5VWN6 2430 aa14.35□□□□□ -0.11
VPS29-211ENST00000553128 M0R2N6 131 aa14.35□□□□□ -0.11
VPS29-211ENST00000553128 TM4SF5O14894 197 aa14.35□□□□□ -0.11
VPS29-211ENST00000553128 P4HBP07237 508 aaKnown RBP14.35□□□□□ -0.11
VPS29-211ENST00000553128 CHRNB1P11230 501 aa14.35□□□□□ -0.11
VPS29-211ENST00000553128 CCR3P51677 355 aa14.35□□□□□ -0.11
VPS29-211ENST00000553128 SHC2P98077 582 aa14.35□□□□□ -0.11
VPS29-211ENST00000553128 SF3A2Q15428 464 aaKnown RBP14.35□□□□□ -0.11
VPS29-211ENST00000553128 NAB2Q15742 525 aa14.35□□□□□ -0.11
VPS29-211ENST00000553128 NPY5RQ15761 445 aa14.35□□□□□ -0.11
VPS29-211ENST00000553128 UVSSAQ2YD98 709 aa14.35□□□□□ -0.11
VPS29-211ENST00000553128 WDR44Q5JSH3 913 aa14.35□□□□□ -0.11
VPS29-211ENST00000553128 FAM78AQ5JUQ0 283 aa14.35□□□□□ -0.11
VPS29-211ENST00000553128 RNF20Q5VTR2 975 aa14.35□□□□□ -0.11
VPS29-211ENST00000553128 HEATR6Q6AI08 1181 aaKnown RBP14.35□□□□□ -0.11
VPS29-211ENST00000553128 SLC27A1Q6PCB7 646 aa14.35□□□□□ -0.11
VPS29-211ENST00000553128 Q6ZUG5 572 aa14.35□□□□□ -0.11
VPS29-211ENST00000553128 IFNLR1Q8IU57 520 aaPredicted RBP14.35□□□□□ -0.11
VPS29-211ENST00000553128 TCP11Q8WWU5 503 aa14.35□□□□□ -0.11
VPS29-211ENST00000553128 FAM3CQ92520 227 aa14.35□□□□□ -0.11
VPS29-211ENST00000553128 BRF1Q92994 677 aa14.35□□□□□ -0.11
VPS29-211ENST00000553128 MTRQ99707 1265 aa14.35□□□□□ -0.11
VPS29-211ENST00000553128 SLKQ9H2G2 1235 aaPredicted RBP14.35□□□□□ -0.11
VPS29-211ENST00000553128 BRD9Q9H8M2 597 aa14.35□□□□□ -0.11
VPS29-211ENST00000553128 SH2B1Q9NRF2 756 aaPredicted RBP14.35□□□□□ -0.11
VPS29-211ENST00000553128 DDX25Q9UHL0 483 aaKnown RBP14.35□□□□□ -0.11
VPS29-211ENST00000553128 CDY1Q9Y6F8 540 aa14.35□□□□□ -0.11
VPS29-211ENST00000553128 CNOT1A5YKK6 2376 aaKnown RBP14.35□□□□□ -0.11
VPS29-211ENST00000553128 F5P12259 2224 aa14.35□□□□□ -0.11
VPS29-211ENST00000553128 TTLL13PA6NNM8 815 aa14.34□□□□□ -0.11
VPS29-211ENST00000553128 K7ESF4 209 aa14.34□□□□□ -0.11
VPS29-211ENST00000553128 MAN2B1O00754 1011 aa14.34□□□□□ -0.11
VPS29-211ENST00000553128 CCR2P41597 374 aa14.34□□□□□ -0.11
VPS29-211ENST00000553128 CXCL12P48061 93 aa14.34□□□□□ -0.11
VPS29-211ENST00000553128 AKAP17AQ02040 695 aaKnown RBP14.34□□□□□ -0.11
VPS29-211ENST00000553128 CTTNQ14247 550 aaKnown RBP14.34□□□□□ -0.11
VPS29-211ENST00000553128 PCBP1Q15365 356 aaKnown RBP eCLIP14.34□□□□□ -0.11
VPS29-211ENST00000553128 TSGA10IPQ3SY00 556 aa14.34□□□□□ -0.11
VPS29-211ENST00000553128 XKR9Q5GH70 373 aa14.34□□□□□ -0.11
VPS29-211ENST00000553128 PRSS36Q5K4E3 855 aa14.34□□□□□ -0.11
VPS29-211ENST00000553128 IL31Q6EBC2 164 aa14.34□□□□□ -0.11
VPS29-211ENST00000553128 MAP4K3Q8IVH8 894 aa14.34□□□□□ -0.11
VPS29-211ENST00000553128 C4orf19Q8IY42 314 aa14.34□□□□□ -0.11
VPS29-211ENST00000553128 EXOC8Q8IYI6 725 aa14.34□□□□□ -0.11
VPS29-211ENST00000553128 HACE1Q8IYU2 909 aa14.34□□□□□ -0.11
VPS29-211ENST00000553128 FAM160A2Q8N612 972 aaPredicted RBP14.34□□□□□ -0.11
VPS29-211ENST00000553128 DYDC2Q96IM9 177 aa14.34□□□□□ -0.11
VPS29-211ENST00000553128 ZSWIM3Q96MP5 696 aa14.34□□□□□ -0.11
VPS29-211ENST00000553128 RNF26Q9BY78 433 aaPredicted RBP14.34□□□□□ -0.11
VPS29-211ENST00000553128 NCOA5Q9HCD5 579 aaKnown RBP14.34□□□□□ -0.11
VPS29-211ENST00000553128 ZNF334Q9HCZ1 680 aaPredicted RBP14.34□□□□□ -0.11
VPS29-211ENST00000553128 KCNMB3Q9NPA1 279 aa14.34□□□□□ -0.11
VPS29-211ENST00000553128 RBM12Q9NTZ6 932 aaKnown RBP14.34□□□□□ -0.11
VPS29-211ENST00000553128 MTRRQ9UBK8 725 aa14.34□□□□□ -0.11
VPS29-211ENST00000553128 PCDHA4Q9UN74 947 aa14.34□□□□□ -0.11
VPS29-211ENST00000553128 PPME1Q9Y570 386 aa14.34□□□□□ -0.11
VPS29-211ENST00000553128 PIAS3Q9Y6X2 628 aa14.34□□□□□ -0.11
VPS29-211ENST00000553128 A0A1B0GUA9 196 aa14.33□□□□□ -0.12
VPS29-211ENST00000553128 GLRA2P23416 452 aa14.33□□□□□ -0.12
VPS29-211ENST00000553128 CCNE1P24864 410 aa14.33□□□□□ -0.12
VPS29-211ENST00000553128 GDI1P31150 447 aa14.33□□□□□ -0.12
VPS29-211ENST00000553128 FGD1P98174 961 aa14.33□□□□□ -0.12
VPS29-211ENST00000553128 CYP4A11Q02928 519 aa14.33□□□□□ -0.12
VPS29-211ENST00000553128 NCBP1Q09161 790 aaKnown RBP14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms