RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 CDK11BP21127 795 aaKnown RBP10.4□□□□□ -0.74
LIMA1-211ENST00000552338 PBX1P40424 430 aa10.4□□□□□ -0.74
LIMA1-211ENST00000552338 TNFSF9P41273 254 aa10.4□□□□□ -0.74
LIMA1-211ENST00000552338 ACOT2P49753 483 aa10.4□□□□□ -0.74
LIMA1-211ENST00000552338 RGS19P49795 217 aa10.4□□□□□ -0.74
LIMA1-211ENST00000552338 COPB1P53618 953 aaKnown RBP10.4□□□□□ -0.74
LIMA1-211ENST00000552338 KCNH2Q12809 1159 aa10.4□□□□□ -0.74
LIMA1-211ENST00000552338 ENOX2Q16206 610 aaKnown RBP10.4□□□□□ -0.74
LIMA1-211ENST00000552338 VWA3BQ502W6 1294 aa10.4□□□□□ -0.74
LIMA1-211ENST00000552338 ZBTB41Q5SVQ8 909 aa10.4□□□□□ -0.74
LIMA1-211ENST00000552338 TWF2Q6IBS0 349 aaKnown RBP10.4□□□□□ -0.74
LIMA1-211ENST00000552338 AGMOQ6ZNB7 445 aa10.4□□□□□ -0.74
LIMA1-211ENST00000552338 CDR2LQ86X02 465 aaPredicted RBP10.4□□□□□ -0.74
LIMA1-211ENST00000552338 ECHDC2Q86YB7 292 aa10.4□□□□□ -0.74
LIMA1-211ENST00000552338 WDR49Q8IV35 697 aa10.4□□□□□ -0.74
LIMA1-211ENST00000552338 HACE1Q8IYU2 909 aa10.4□□□□□ -0.74
LIMA1-211ENST00000552338 CEP120Q8N960 986 aa10.4□□□□□ -0.74
LIMA1-211ENST00000552338 GSTCDQ8NEC7 633 aa10.4□□□□□ -0.74
LIMA1-211ENST00000552338 SPDYE1Q8NFV5 336 aaPredicted RBP10.4□□□□□ -0.74
LIMA1-211ENST00000552338 PGBD4Q96DM1 585 aa10.4□□□□□ -0.74
LIMA1-211ENST00000552338 SAAL1Q96ER3 474 aa10.4□□□□□ -0.74
LIMA1-211ENST00000552338 MRFAP1L1Q96HT8 127 aa10.4□□□□□ -0.74
LIMA1-211ENST00000552338 SCLYQ96I15 445 aa10.4□□□□□ -0.74
LIMA1-211ENST00000552338 FAXDC2Q96IV6 333 aa10.4□□□□□ -0.74
LIMA1-211ENST00000552338 SNX27Q96L92 541 aa10.4□□□□□ -0.74
LIMA1-211ENST00000552338 PPP1R12CQ9BZL4 782 aa10.4□□□□□ -0.74
LIMA1-211ENST00000552338 NDST4Q9H3R1 872 aa10.4□□□□□ -0.74
LIMA1-211ENST00000552338 IL23AQ9NPF7 189 aa10.4□□□□□ -0.74
LIMA1-211ENST00000552338 TOPORSQ9NS56 1045 aaPredicted RBP10.4□□□□□ -0.74
LIMA1-211ENST00000552338 TMEM161AQ9NX61 479 aa10.4□□□□□ -0.74
LIMA1-211ENST00000552338 RBAKQ9NYW8 714 aaPredicted RBP10.4□□□□□ -0.74
LIMA1-211ENST00000552338 ANKFY1Q9P2R3 1169 aa10.4□□□□□ -0.74
LIMA1-211ENST00000552338 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.4□□□□□ -0.74
LIMA1-211ENST00000552338 GOLGA8IPA6NC78 632 aa10.39□□□□□ -0.75
LIMA1-211ENST00000552338 GOLGA8JA6NMD2 632 aa10.39□□□□□ -0.75
LIMA1-211ENST00000552338 LRRIQ3A6PVS8 624 aaPredicted RBP10.39□□□□□ -0.75
LIMA1-211ENST00000552338 LGALS16A8MUM7 142 aa10.39□□□□□ -0.75
LIMA1-211ENST00000552338 N4BP1O75113 896 aaKnown RBP10.39□□□□□ -0.75
LIMA1-211ENST00000552338 KRT13P13646 458 aa10.39□□□□□ -0.75
LIMA1-211ENST00000552338 CYP3A5P20815 502 aa10.39□□□□□ -0.75
LIMA1-211ENST00000552338 CCL23P55773 120 aa10.39□□□□□ -0.75
LIMA1-211ENST00000552338 WNT7BP56706 349 aa10.39□□□□□ -0.75
LIMA1-211ENST00000552338 UBASH3AP57075 661 aa10.39□□□□□ -0.75
LIMA1-211ENST00000552338 PPIGQ13427 754 aaKnown RBP eCLIP10.39□□□□□ -0.75
LIMA1-211ENST00000552338 IKBKEQ14164 716 aa10.39□□□□□ -0.75
LIMA1-211ENST00000552338 TCTN1Q2MV58 587 aa10.39□□□□□ -0.75
LIMA1-211ENST00000552338 ZACNQ401N2 412 aa10.39□□□□□ -0.75
LIMA1-211ENST00000552338 CCDC40Q4G0X9 1142 aa10.39□□□□□ -0.75
LIMA1-211ENST00000552338 ZBTB33Q86T24 672 aa10.39□□□□□ -0.75
LIMA1-211ENST00000552338 TMEM192Q8IY95 271 aa10.39□□□□□ -0.75
LIMA1-211ENST00000552338 THNSL1Q8IYQ7 743 aa10.39□□□□□ -0.75
LIMA1-211ENST00000552338 TNS4Q8IZW8 715 aa10.39□□□□□ -0.75
LIMA1-211ENST00000552338 RDH13Q8NBN7 331 aa10.39□□□□□ -0.75
LIMA1-211ENST00000552338 LMO3Q8TAP4 145 aa10.39□□□□□ -0.75
LIMA1-211ENST00000552338 CXorf38Q8TB03 319 aa10.39□□□□□ -0.75
LIMA1-211ENST00000552338 ZNF516Q92618 1163 aa10.39□□□□□ -0.75
LIMA1-211ENST00000552338 EEF2KMTQ96G04 330 aa10.39□□□□□ -0.75
LIMA1-211ENST00000552338 NAP1L5Q96NT1 182 aaPredicted RBP10.39□□□□□ -0.75
LIMA1-211ENST00000552338 CGRRF1Q99675 332 aa10.39□□□□□ -0.75
LIMA1-211ENST00000552338 TRIM6Q9C030 488 aaPredicted RBP10.39□□□□□ -0.75
LIMA1-211ENST00000552338 NXF3Q9H4D5 531 aaKnown RBP10.39□□□□□ -0.75
LIMA1-211ENST00000552338 TMEM8AQ9HCN3 771 aa10.39□□□□□ -0.75
LIMA1-211ENST00000552338 SNTG2Q9NY99 539 aa10.39□□□□□ -0.75
LIMA1-211ENST00000552338 DAAM1Q9Y4D1 1078 aa10.39□□□□□ -0.75
LIMA1-211ENST00000552338 COL4A6Q14031 1691 aa10.38□□□□□ -0.75
LIMA1-211ENST00000552338 SCN1AP35498 2009 aa10.38□□□□□ -0.75
LIMA1-211ENST00000552338 LACTBL1A8MY62 500 aa10.38□□□□□ -0.75
LIMA1-211ENST00000552338 CBFA2T2O43439 604 aa10.38□□□□□ -0.75
LIMA1-211ENST00000552338 STAU1O95793 577 aaKnown RBP10.38□□□□□ -0.75
LIMA1-211ENST00000552338 AFPP02771 609 aaKnown RBP10.38□□□□□ -0.75
LIMA1-211ENST00000552338 TPM2P07951 284 aa10.38□□□□□ -0.75
LIMA1-211ENST00000552338 CXCL8P10145 99 aa10.38□□□□□ -0.75
LIMA1-211ENST00000552338 CSF2RAP15509 400 aa10.38□□□□□ -0.75
LIMA1-211ENST00000552338 CDC25BP30305 580 aa10.38□□□□□ -0.75
LIMA1-211ENST00000552338 MATR3P43243 847 aaKnown RBP eCLIP10.38□□□□□ -0.75
LIMA1-211ENST00000552338 MTIF2P46199 727 aaKnown RBP10.38□□□□□ -0.75
LIMA1-211ENST00000552338 FMO5P49326 533 aa10.38□□□□□ -0.75
LIMA1-211ENST00000552338 YARSP54577 528 aaKnown RBP10.38□□□□□ -0.75
LIMA1-211ENST00000552338 DLG4P78352 724 aa10.38□□□□□ -0.75
LIMA1-211ENST00000552338 PPP3CAQ08209 521 aa10.38□□□□□ -0.75
LIMA1-211ENST00000552338 NAB2Q15742 525 aa10.38□□□□□ -0.75
LIMA1-211ENST00000552338 TMEM132AQ24JP5 1023 aa10.38□□□□□ -0.75
LIMA1-211ENST00000552338 FILIP1LQ4L180 1135 aa10.38□□□□□ -0.75
LIMA1-211ENST00000552338 FIGNQ5HY92 759 aa10.38□□□□□ -0.75
LIMA1-211ENST00000552338 KRT39Q6A163 491 aa10.38□□□□□ -0.75
LIMA1-211ENST00000552338 DPY19L2P1Q6NXN4 242 aa10.38□□□□□ -0.75
LIMA1-211ENST00000552338 SV2AQ7L0J3 742 aa10.38□□□□□ -0.75
LIMA1-211ENST00000552338 C16orf59Q7L2K0 433 aa10.38□□□□□ -0.75
LIMA1-211ENST00000552338 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.38□□□□□ -0.75
LIMA1-211ENST00000552338 IQCDQ96DY2 449 aa10.38□□□□□ -0.75
LIMA1-211ENST00000552338 PPP1R10Q96QC0 940 aaKnown RBP10.38□□□□□ -0.75
LIMA1-211ENST00000552338 TMEM117Q9H0C3 514 aa10.38□□□□□ -0.75
LIMA1-211ENST00000552338 VRTNQ9H8Y1 702 aa10.38□□□□□ -0.75
LIMA1-211ENST00000552338 PDE11AQ9HCR9 933 aa10.38□□□□□ -0.75
LIMA1-211ENST00000552338 RNF19AQ9NV58 838 aa10.38□□□□□ -0.75
LIMA1-211ENST00000552338 INTS13Q9NVM9 706 aa10.38□□□□□ -0.75
LIMA1-211ENST00000552338 PRKAG2Q9UGJ0 569 aa10.38□□□□□ -0.75
LIMA1-211ENST00000552338 FBXL5Q9UKA1 691 aa10.38□□□□□ -0.75
LIMA1-211ENST00000552338 ITIH6Q6UXX5 1313 aa10.37□□□□□ -0.75
LIMA1-211ENST00000552338 SMIM28A0A1B0GU29 152 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms