RNA–Protein interactions for RNA: ENST00000550075.5

CPSF6-205, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 4

Gene CPSF6, Length 540 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-205ENST00000550075 TPRNQ4KMQ1 711 aa28.32■■■□□ 2.12
CPSF6-205ENST00000550075 FAM26FQ5R3K3 315 aa28.32■■■□□ 2.12
CPSF6-205ENST00000550075 SYCP3Q8IZU3 236 aa28.32■■■□□ 2.12
CPSF6-205ENST00000550075 ZBP1Q9H171 429 aa28.32■■■□□ 2.12
CPSF6-205ENST00000550075 TMEM206Q9H813 350 aa28.32■■■□□ 2.12
CPSF6-205ENST00000550075 A0A0B4J269 797 aa28.31■■■□□ 2.12
CPSF6-205ENST00000550075 MYBP10242 640 aa28.31■■■□□ 2.12
CPSF6-205ENST00000550075 NRIP1P48552 1158 aa28.31■■■□□ 2.12
CPSF6-205ENST00000550075 NDUFA8P51970 172 aa28.31■■■□□ 2.12
CPSF6-205ENST00000550075 MRPS5P82675 430 aaKnown RBP28.31■■■□□ 2.12
CPSF6-205ENST00000550075 HSP90AA2PQ14568 343 aaPredicted RBP28.31■■■□□ 2.12
CPSF6-205ENST00000550075 POSTNQ15063 836 aa28.31■■■□□ 2.12
CPSF6-205ENST00000550075 XKR4Q5GH76 650 aa28.31■■■□□ 2.12
CPSF6-205ENST00000550075 GLRA4Q5JXX5 417 aa28.31■■■□□ 2.12
CPSF6-205ENST00000550075 UROC1Q96N76 676 aa28.31■■■□□ 2.12
CPSF6-205ENST00000550075 PPP1R10Q96QC0 940 aaKnown RBP28.31■■■□□ 2.12
CPSF6-205ENST00000550075 MARCH5Q9NX47 278 aa28.31■■■□□ 2.12
CPSF6-205ENST00000550075 CNTN3Q9P232 1028 aa28.31■■■□□ 2.12
CPSF6-205ENST00000550075 PCDHGC5Q9Y5F6 944 aa28.31■■■□□ 2.12
CPSF6-205ENST00000550075 GTF3C5Q9Y5Q8 519 aaPredicted RBP28.31■■■□□ 2.12
CPSF6-205ENST00000550075 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP28.3■■■□□ 2.12
CPSF6-205ENST00000550075 PVALEFA0A1B0GWK0 134 aa28.3■■■□□ 2.12
CPSF6-205ENST00000550075 CASTOR2A6NHX0 329 aa28.3■■■□□ 2.12
CPSF6-205ENST00000550075 CTSAP10619 480 aa28.3■■■□□ 2.12
CPSF6-205ENST00000550075 KCNE1P15382 129 aa28.3■■■□□ 2.12
CPSF6-205ENST00000550075 COL19A1Q14993 1142 aa28.3■■■□□ 2.12
CPSF6-205ENST00000550075 SLC39A4Q6P5W5 647 aa28.3■■■□□ 2.12
CPSF6-205ENST00000550075 EP400NLQ6ZTU2 488 aa28.3■■■□□ 2.12
CPSF6-205ENST00000550075 ADGRD2Q7Z7M1 963 aa28.3■■■□□ 2.12
CPSF6-205ENST00000550075 TMEM87AQ8NBN3 555 aa28.3■■■□□ 2.12
CPSF6-205ENST00000550075 HERC2P3Q9BVR0 1158 aa28.3■■■□□ 2.12
CPSF6-205ENST00000550075 HAPLN2Q9GZV7 340 aa28.3■■■□□ 2.12
CPSF6-205ENST00000550075 BLZF1Q9H2G9 400 aa28.3■■■□□ 2.12
CPSF6-205ENST00000550075 IGFLR1Q9H665 355 aa28.3■■■□□ 2.12
CPSF6-205ENST00000550075 PLEKHA5Q9HAU0 1116 aa28.3■■■□□ 2.12
CPSF6-205ENST00000550075 CLDND1Q9NY35 253 aa28.3■■■□□ 2.12
CPSF6-205ENST00000550075 CHMP5Q9NZZ3 219 aa28.3■■■□□ 2.12
CPSF6-205ENST00000550075 ADAM28Q9UKQ2 775 aa28.3■■■□□ 2.12
CPSF6-205ENST00000550075 REV3LO60673 3130 aa28.29■■■□□ 2.12
CPSF6-205ENST00000550075 SMIM28A0A1B0GU29 152 aa28.29■■■□□ 2.12
CPSF6-205ENST00000550075 EIF3DO15371 548 aaKnown RBP eCLIP28.29■■■□□ 2.12
CPSF6-205ENST00000550075 SOD2P04179 222 aa28.29■■■□□ 2.12
CPSF6-205ENST00000550075 CASP5P51878 434 aa28.29■■■□□ 2.12
CPSF6-205ENST00000550075 PPP2R3AQ06190 1150 aa28.29■■■□□ 2.12
CPSF6-205ENST00000550075 CUL4BQ13620 913 aa28.29■■■□□ 2.12
CPSF6-205ENST00000550075 NAB2Q15742 525 aa28.29■■■□□ 2.12
CPSF6-205ENST00000550075 SEZ6Q53EL9 994 aa28.29■■■□□ 2.12
CPSF6-205ENST00000550075 ALKAL1Q6UXT8 129 aa28.29■■■□□ 2.12
CPSF6-205ENST00000550075 RBM23Q86U06 439 aaKnown RBP28.29■■■□□ 2.12
CPSF6-205ENST00000550075 POMGNT1Q8WZA1 660 aa28.29■■■□□ 2.12
CPSF6-205ENST00000550075 PAGE5Q96GU1 130 aa28.29■■■□□ 2.12
CPSF6-205ENST00000550075 RPF1Q9H9Y2 349 aaKnown RBP28.29■■■□□ 2.12
CPSF6-205ENST00000550075 SSX2IPQ9Y2D8 614 aa28.29■■■□□ 2.12
CPSF6-205ENST00000550075 STYXL1Q9Y6J8 313 aa28.29■■■□□ 2.12
CPSF6-205ENST00000550075 PDCD11Q14690 1871 aaKnown RBP28.29■■■□□ 2.12
CPSF6-205ENST00000550075 SF3B1O75533 1304 aaKnown RBP eCLIP28.28■■■□□ 2.124e-8■■■■■ 34.5
CPSF6-205ENST00000550075 UBE4BO95155 1302 aa28.28■■■□□ 2.12
CPSF6-205ENST00000550075 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP28.28■■■□□ 2.12
CPSF6-205ENST00000550075 ANKRD63C9JTQ0 380 aa28.28■■■□□ 2.12
CPSF6-205ENST00000550075 URODP06132 367 aa28.28■■■□□ 2.12
CPSF6-205ENST00000550075 SRGAP2BP0DMP2 458 aa28.28■■■□□ 2.12
CPSF6-205ENST00000550075 CXCL8P10145 99 aa28.28■■■□□ 2.12
CPSF6-205ENST00000550075 DUSP6Q16828 381 aa28.28■■■□□ 2.12
CPSF6-205ENST00000550075 GRAMD1CQ8IYS0 662 aa28.28■■■□□ 2.12
CPSF6-205ENST00000550075 EFHBQ8N7U6 833 aa28.28■■■□□ 2.12
CPSF6-205ENST00000550075 MRPL43Q8N983 215 aaKnown RBP28.28■■■□□ 2.12
CPSF6-205ENST00000550075 CXCL16Q9H2A7 254 aa28.28■■■□□ 2.12
CPSF6-205ENST00000550075 AGO2Q9UKV8 859 aaKnown RBP28.28■■■□□ 2.12
CPSF6-205ENST00000550075 IRAK3Q9Y616 596 aa28.28■■■□□ 2.12
CPSF6-205ENST00000550075 TADA2AO75478 443 aa28.27■■■□□ 2.12
CPSF6-205ENST00000550075 CXCL14O95715 111 aa28.27■■■□□ 2.12
CPSF6-205ENST00000550075 KCNA5P22460 613 aa28.27■■■□□ 2.12
CPSF6-205ENST00000550075 SLC10A6Q3KNW5 377 aa28.27■■■□□ 2.12
CPSF6-205ENST00000550075 FUT10Q6P4F1 479 aa28.27■■■□□ 2.12
CPSF6-205ENST00000550075 CCDC47Q96A33 483 aaKnown RBP28.27■■■□□ 2.12
CPSF6-205ENST00000550075 TSPAN18Q96SJ8 248 aa28.27■■■□□ 2.12
CPSF6-205ENST00000550075 VN1R3Q9BXE9 311 aa28.27■■■□□ 2.12
CPSF6-205ENST00000550075 FGFBP2Q9BYJ0 223 aa28.27■■■□□ 2.12
CPSF6-205ENST00000550075 GOLPH3LQ9H4A5 285 aa28.27■■■□□ 2.12
CPSF6-205ENST00000550075 EXOC1Q9NV70 894 aa28.27■■■□□ 2.12
CPSF6-205ENST00000550075 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP28.26■■■□□ 2.11
CPSF6-205ENST00000550075 C2orf71A6NGG8 1288 aa28.26■■■□□ 2.11
CPSF6-205ENST00000550075 HIDE1A8MVS5 230 aa28.26■■■□□ 2.11
CPSF6-205ENST00000550075 XPOTO43592 962 aaKnown RBP28.26■■■□□ 2.11
CPSF6-205ENST00000550075 FAM189A1O60320 539 aa28.26■■■□□ 2.11
CPSF6-205ENST00000550075 PRPF6O94906 941 aaKnown RBP28.26■■■□□ 2.11
CPSF6-205ENST00000550075 CASP1P29466 404 aa28.26■■■□□ 2.11
CPSF6-205ENST00000550075 KCNA1Q09470 495 aa28.26■■■□□ 2.11
CPSF6-205ENST00000550075 ELAVL2Q12926 359 aaKnown RBP28.26■■■□□ 2.11
CPSF6-205ENST00000550075 KRBA2Q6ZNG9 492 aa28.26■■■□□ 2.11
CPSF6-205ENST00000550075 CD302Q8IX05 232 aa28.26■■■□□ 2.11
CPSF6-205ENST00000550075 DDX27Q96GQ7 796 aaKnown RBP28.26■■■□□ 2.11
CPSF6-205ENST00000550075 MRPL17Q9NRX2 175 aaKnown RBP28.26■■■□□ 2.11
CPSF6-205ENST00000550075 TISP43B9A030 160 aa28.25■■■□□ 2.11
CPSF6-205ENST00000550075 TMEM189-UBE2V1I3L0A0 370 aa28.25■■■□□ 2.11
CPSF6-205ENST00000550075 GARTP22102 1010 aa28.25■■■□□ 2.11
CPSF6-205ENST00000550075 TNFSF9P41273 254 aa28.25■■■□□ 2.11
CPSF6-205ENST00000550075 GLUD2P49448 558 aa28.25■■■□□ 2.11
CPSF6-205ENST00000550075 NDUFV1P49821 464 aa28.25■■■□□ 2.11
CPSF6-205ENST00000550075 TFF2Q03403 129 aa28.25■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms