RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 PLS3P13797 630 aa17.92■□□□□ 0.46
VPS29-207ENST00000549970 GRM5P41594 1212 aa17.92■□□□□ 0.46
VPS29-207ENST00000549970 YARSP54577 528 aaKnown RBP17.92■□□□□ 0.46
VPS29-207ENST00000549970 CACNB1Q02641 598 aaPredicted RBP17.92■□□□□ 0.46
VPS29-207ENST00000549970 CREMQ03060 361 aa17.92■□□□□ 0.46
VPS29-207ENST00000549970 CUL4AQ13619 759 aa17.92■□□□□ 0.46
VPS29-207ENST00000549970 BMP8AQ7Z5Y6 402 aa17.92■□□□□ 0.46
VPS29-207ENST00000549970 GPR65Q8IYL9 337 aa17.92■□□□□ 0.46
VPS29-207ENST00000549970 ZDHHC14Q8IZN3 488 aa17.92■□□□□ 0.46
VPS29-207ENST00000549970 KCTD17Q8N5Z5 321 aa17.92■□□□□ 0.46
VPS29-207ENST00000549970 CMASQ8NFW8 434 aaPredicted RBP17.92■□□□□ 0.46
VPS29-207ENST00000549970 AK8Q96MA6 479 aa17.92■□□□□ 0.46
VPS29-207ENST00000549970 PPP1R10Q96QC0 940 aaKnown RBP17.92■□□□□ 0.46
VPS29-207ENST00000549970 TCHPQ9BT92 498 aa17.92■□□□□ 0.46
VPS29-207ENST00000549970 TTPALQ9BTX7 342 aa17.92■□□□□ 0.46
VPS29-207ENST00000549970 CCDC94Q9BW85 323 aaPredicted RBP17.92■□□□□ 0.46
VPS29-207ENST00000549970 PTPRHQ9HD43 1115 aa17.92■□□□□ 0.46
VPS29-207ENST00000549970 FNIP2Q9P278 1114 aa17.92■□□□□ 0.46
VPS29-207ENST00000549970 LIMD1Q9UGP4 676 aa17.92■□□□□ 0.46
VPS29-207ENST00000549970 SORCS3Q9UPU3 1222 aa17.92■□□□□ 0.46
VPS29-207ENST00000549970 MUC6Q6W4X9 2439 aa17.92■□□□□ 0.46
VPS29-207ENST00000549970 NPHP3-ACAD11A0A0J9YXS1 232 aa17.91■□□□□ 0.46
VPS29-207ENST00000549970 UBA7P41226 1012 aa17.91■□□□□ 0.46
VPS29-207ENST00000549970 CLCNKBP51801 687 aa17.91■□□□□ 0.46
VPS29-207ENST00000549970 STRN3Q13033 797 aa17.91■□□□□ 0.46
VPS29-207ENST00000549970 MTMR3Q13615 1198 aa17.91■□□□□ 0.46
VPS29-207ENST00000549970 SF3A1Q15459 793 aaKnown RBP17.91■□□□□ 0.46
VPS29-207ENST00000549970 SUGP1Q8IWZ8 645 aaKnown RBP17.91■□□□□ 0.46
VPS29-207ENST00000549970 PLCD3Q8N3E9 789 aa17.91■□□□□ 0.46
VPS29-207ENST00000549970 SPIRE2Q8WWL2 714 aa17.91■□□□□ 0.46
VPS29-207ENST00000549970 ACSF2Q96CM8 615 aaPredicted RBP17.91■□□□□ 0.46
VPS29-207ENST00000549970 ASIC4Q96FT7 647 aa17.91■□□□□ 0.46
VPS29-207ENST00000549970 CALML4Q96GE6 196 aa17.91■□□□□ 0.46
VPS29-207ENST00000549970 GOLGA2P5Q9HBQ8 144 aa17.91■□□□□ 0.46
VPS29-207ENST00000549970 TOPORSQ9NS56 1045 aaPredicted RBP17.91■□□□□ 0.46
VPS29-207ENST00000549970 DAXXQ9UER7 740 aaPredicted RBP17.91■□□□□ 0.46
VPS29-207ENST00000549970 MTCL1Q9Y4B5 1905 aaKnown RBP17.91■□□□□ 0.46
VPS29-207ENST00000549970 VWA8A3KMH1 1905 aa17.9■□□□□ 0.46
VPS29-207ENST00000549970 SMIM28A0A1B0GU29 152 aa17.9■□□□□ 0.46
VPS29-207ENST00000549970 B3GAT3O94766 335 aa17.9■□□□□ 0.46
VPS29-207ENST00000549970 BRD1O95696 1058 aa17.9■□□□□ 0.46
VPS29-207ENST00000549970 BMP15O95972 392 aa17.9■□□□□ 0.46
VPS29-207ENST00000549970 MCF2P10911 925 aa17.9■□□□□ 0.46
VPS29-207ENST00000549970 PROZP22891 400 aa17.9■□□□□ 0.46
VPS29-207ENST00000549970 IGFBP6P24592 240 aaPredicted RBP17.9■□□□□ 0.46
VPS29-207ENST00000549970 SMTNP53814 917 aa17.9■□□□□ 0.46
VPS29-207ENST00000549970 GRIN1Q05586 938 aa17.9■□□□□ 0.46
VPS29-207ENST00000549970 ELAVL2Q12926 359 aaKnown RBP17.9■□□□□ 0.46
VPS29-207ENST00000549970 DHX8Q14562 1220 aaKnown RBP17.9■□□□□ 0.46
VPS29-207ENST00000549970 PSMD5Q16401 504 aa17.9■□□□□ 0.46
VPS29-207ENST00000549970 MPZL3Q6UWV2 235 aa17.9■□□□□ 0.46
VPS29-207ENST00000549970 OTOP3Q7RTS5 596 aa17.9■□□□□ 0.46
VPS29-207ENST00000549970 TMEM161BQ8NDZ6 487 aa17.9■□□□□ 0.46
VPS29-207ENST00000549970 RASSF8Q8NHQ8 419 aa17.9■□□□□ 0.46
VPS29-207ENST00000549970 HDAC7Q8WUI4 952 aa17.9■□□□□ 0.46
VPS29-207ENST00000549970 PIK3R5Q8WYR1 880 aa17.9■□□□□ 0.46
VPS29-207ENST00000549970 SMG7Q92540 1137 aaKnown RBP17.9■□□□□ 0.46
VPS29-207ENST00000549970 ZBTB45Q96K62 511 aaPredicted RBP17.9■□□□□ 0.46
VPS29-207ENST00000549970 NTPCRQ9BSD7 190 aaKnown RBP17.9■□□□□ 0.46
VPS29-207ENST00000549970 SMOC2Q9H3U7 446 aa17.9■□□□□ 0.46
VPS29-207ENST00000549970 PLEKHA4Q9H4M7 779 aa17.9■□□□□ 0.46
VPS29-207ENST00000549970 KCND2Q9NZV8 630 aa17.9■□□□□ 0.46
VPS29-207ENST00000549970 ANKFY1Q9P2R3 1169 aa17.9■□□□□ 0.46
VPS29-207ENST00000549970 ABLIM1O14639 778 aa17.89■□□□□ 0.45
VPS29-207ENST00000549970 MAPTP10636 758 aaKnown RBP17.89■□□□□ 0.45
VPS29-207ENST00000549970 ARSHQ5FYA8 562 aa17.89■□□□□ 0.45
VPS29-207ENST00000549970 LILRA6Q6PI73 481 aa17.89■□□□□ 0.45
VPS29-207ENST00000549970 GPBP1Q86WP2 473 aa17.89■□□□□ 0.45
VPS29-207ENST00000549970 UBALD2Q8IYN6 164 aa17.89■□□□□ 0.45
VPS29-207ENST00000549970 FBXL6Q8N531 539 aa17.89■□□□□ 0.45
VPS29-207ENST00000549970 LNX1Q8TBB1 728 aaPredicted RBP17.89■□□□□ 0.45
VPS29-207ENST00000549970 LRRC15Q8TF66 581 aa17.89■□□□□ 0.45
VPS29-207ENST00000549970 ZNF707Q96C28 371 aaPredicted RBP17.89■□□□□ 0.45
VPS29-207ENST00000549970 SNX27Q96L92 541 aa17.89■□□□□ 0.45
VPS29-207ENST00000549970 ACAP3Q96P50 834 aa17.89■□□□□ 0.45
VPS29-207ENST00000549970 CLSTN3Q9BQT9 956 aa17.89■□□□□ 0.45
VPS29-207ENST00000549970 PIDD1Q9HB75 910 aa17.89■□□□□ 0.45
VPS29-207ENST00000549970 KCNG1Q9UIX4 513 aa17.89■□□□□ 0.45
VPS29-207ENST00000549970 CITO14578 2027 aa17.89■□□□□ 0.45
VPS29-207ENST00000549970 ZDBF2Q9HCK1 2354 aa17.89■□□□□ 0.45
VPS29-207ENST00000549970 TMEM189-UBE2V1I3L0A0 370 aa17.88■□□□□ 0.45
VPS29-207ENST00000549970 SLC26A4O43511 780 aa17.88■□□□□ 0.45
VPS29-207ENST00000549970 C1RP00736 705 aa17.88■□□□□ 0.45
VPS29-207ENST00000549970 PLCG1P19174 1290 aa17.88■□□□□ 0.45
VPS29-207ENST00000549970 PDCP20941 246 aa17.88■□□□□ 0.45
VPS29-207ENST00000549970 LONP1P36776 959 aaKnown RBP17.88■□□□□ 0.45
VPS29-207ENST00000549970 SOX4Q06945 474 aaPredicted RBP17.88■□□□□ 0.45
VPS29-207ENST00000549970 NOLC1Q14978 699 aaKnown RBP eCLIP17.88■□□□□ 0.45
VPS29-207ENST00000549970 KARSQ15046 597 aaKnown RBP17.88■□□□□ 0.45
VPS29-207ENST00000549970 UPP1Q16831 310 aa17.88■□□□□ 0.45
VPS29-207ENST00000549970 SEZ6Q53EL9 994 aa17.88■□□□□ 0.45
VPS29-207ENST00000549970 XKR4Q5GH76 650 aa17.88■□□□□ 0.45
VPS29-207ENST00000549970 DCLRE1AQ6PJP8 1040 aa17.88■□□□□ 0.45
VPS29-207ENST00000549970 ALKAL1Q6UXT8 129 aa17.88■□□□□ 0.45
VPS29-207ENST00000549970 CYP26C1Q6V0L0 522 aa17.88■□□□□ 0.45
VPS29-207ENST00000549970 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.88■□□□□ 0.45
VPS29-207ENST00000549970 C3orf58Q8NDZ4 430 aa17.88■□□□□ 0.45
VPS29-207ENST00000549970 UROC1Q96N76 676 aa17.88■□□□□ 0.45
VPS29-207ENST00000549970 ZMAT2Q96NC0 199 aaKnown RBP17.88■□□□□ 0.45
VPS29-207ENST00000549970 REEP2Q9BRK0 252 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms