RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 AGAP1Q9UPQ3 857 aa17.3■□□□□ 0.36
CUX1-213ENST00000549414 AFDNP55196 1824 aaKnown RBP17.3■□□□□ 0.36
CUX1-213ENST00000549414 CCDC160A6NGH7 325 aa17.3■□□□□ 0.36
CUX1-213ENST00000549414 TNPO2O14787 897 aaKnown RBP17.3■□□□□ 0.36
CUX1-213ENST00000549414 ADAMTS3O15072 1205 aa17.3■□□□□ 0.36
CUX1-213ENST00000549414 FGRP09769 529 aa17.3■□□□□ 0.36
CUX1-213ENST00000549414 RGS7P49802 495 aa17.3■□□□□ 0.36
CUX1-213ENST00000549414 PSMD6Q15008 389 aa17.3■□□□□ 0.36
CUX1-213ENST00000549414 LRFN2Q9ULH4 789 aa17.3■□□□□ 0.36
CUX1-213ENST00000549414 IGSF9BQ9UPX0 1349 aa17.3■□□□□ 0.36
CUX1-213ENST00000549414 MEIS2O14770 477 aa17.29■□□□□ 0.36
CUX1-213ENST00000549414 ADORA2BP29275 332 aa17.29■□□□□ 0.36
CUX1-213ENST00000549414 CYP2C19P33261 490 aa17.29■□□□□ 0.36
CUX1-213ENST00000549414 DSTYKQ6XUX3 929 aa17.29■□□□□ 0.36
CUX1-213ENST00000549414 JAMLQ86YT9 394 aa17.29■□□□□ 0.36
CUX1-213ENST00000549414 CCHCR1Q8TD31 782 aa17.29■□□□□ 0.36
CUX1-213ENST00000549414 HDAC7Q8WUI4 952 aa17.29■□□□□ 0.36
CUX1-213ENST00000549414 CDKL2Q92772 493 aa17.29■□□□□ 0.36
CUX1-213ENST00000549414 ACSF2Q96CM8 615 aaPredicted RBP17.29■□□□□ 0.36
CUX1-213ENST00000549414 ARHGAP42A6NI28 874 aa17.29■□□□□ 0.36
CUX1-213ENST00000549414 CRCPO75575 148 aa17.29■□□□□ 0.36
CUX1-213ENST00000549414 GRAP2O75791 330 aa17.29■□□□□ 0.36
CUX1-213ENST00000549414 PGK2P07205 417 aa17.29■□□□□ 0.36
CUX1-213ENST00000549414 ZNF157P51786 506 aaPredicted RBP17.29■□□□□ 0.36
CUX1-213ENST00000549414 HUNKP57058 714 aa17.29■□□□□ 0.36
CUX1-213ENST00000549414 ZNF449Q6P9G9 518 aa17.29■□□□□ 0.36
CUX1-213ENST00000549414 ZBED8Q8IZ13 594 aa17.29■□□□□ 0.36
CUX1-213ENST00000549414 MCEEQ96PE7 176 aa17.29■□□□□ 0.36
CUX1-213ENST00000549414 ZKSCAN7Q9P0L1 754 aaPredicted RBP17.29■□□□□ 0.36
CUX1-213ENST00000549414 DHX34Q14147 1143 aaKnown RBP17.29■□□□□ 0.36
CUX1-213ENST00000549414 SMC1BQ8NDV3 1235 aa17.29■□□□□ 0.36
CUX1-213ENST00000549414 CYP26B1Q9NR63 512 aa17.29■□□□□ 0.36
CUX1-213ENST00000549414 PARVAQ9NVD7 372 aa17.29■□□□□ 0.36
CUX1-213ENST00000549414 STRIP2Q9ULQ0 834 aa17.29■□□□□ 0.36
CUX1-213ENST00000549414 RASSF2P50749 326 aa17.29■□□□□ 0.36
CUX1-213ENST00000549414 CLNS1AP54105 237 aaKnown RBP17.29■□□□□ 0.36
CUX1-213ENST00000549414 SPDYE2Q495Y8 402 aa17.29■□□□□ 0.36
CUX1-213ENST00000549414 C15orf52Q6ZUT6 534 aaKnown RBP17.29■□□□□ 0.36
CUX1-213ENST00000549414 PPP4R1Q8TF05 950 aa17.29■□□□□ 0.36
CUX1-213ENST00000549414 SLC35C1Q96A29 364 aa17.29■□□□□ 0.36
CUX1-213ENST00000549414 UVRAGQ9P2Y5 699 aa17.29■□□□□ 0.36
CUX1-213ENST00000549414 PRKAG2Q9UGJ0 569 aa17.29■□□□□ 0.36
CUX1-213ENST00000549414 PCDHB2Q9Y5E7 798 aa17.29■□□□□ 0.36
CUX1-213ENST00000549414 SDC4P31431 198 aa17.28■□□□□ 0.36
CUX1-213ENST00000549414 ARSEP51690 589 aa17.28■□□□□ 0.36
CUX1-213ENST00000549414 PDIA2Q13087 525 aaKnown RBP17.28■□□□□ 0.36
CUX1-213ENST00000549414 NXNQ6DKJ4 435 aa17.28■□□□□ 0.36
CUX1-213ENST00000549414 XRN1Q8IZH2 1706 aaKnown RBP17.28■□□□□ 0.36
CUX1-213ENST00000549414 GMNCA6NCL1 334 aa17.28■□□□□ 0.36
CUX1-213ENST00000549414 F8VZ95 297 aa17.28■□□□□ 0.36
CUX1-213ENST00000549414 H3BQF6 201 aa17.28■□□□□ 0.36
CUX1-213ENST00000549414 KRT3P12035 628 aa17.28■□□□□ 0.36
CUX1-213ENST00000549414 ANXA13P27216 316 aa17.28■□□□□ 0.36
CUX1-213ENST00000549414 RARRES1P49788 294 aa17.28■□□□□ 0.36
CUX1-213ENST00000549414 CDH6P55285 790 aa17.28■□□□□ 0.36
CUX1-213ENST00000549414 TRIM72Q6ZMU5 477 aa17.28■□□□□ 0.36
CUX1-213ENST00000549414 TBC1D1Q86TI0 1168 aaPredicted RBP17.28■□□□□ 0.36
CUX1-213ENST00000549414 C4orf32Q8N8J7 132 aa17.28■□□□□ 0.36
CUX1-213ENST00000549414 VIPAS39Q9H9C1 493 aa17.28■□□□□ 0.36
CUX1-213ENST00000549414 TNFAIP2Q03169 654 aa17.28■□□□□ 0.36
CUX1-213ENST00000549414 CRY2Q49AN0 593 aa17.28■□□□□ 0.36
CUX1-213ENST00000549414 C1orf228Q6PIY5 440 aa17.28■□□□□ 0.36
CUX1-213ENST00000549414 HNRNPLLQ8WVV9 542 aaKnown RBP17.28■□□□□ 0.36
CUX1-213ENST00000549414 CASKIN2Q8WXE0 1202 aa17.28■□□□□ 0.36
CUX1-213ENST00000549414 TTC17Q96AE7 1141 aa17.28■□□□□ 0.36
CUX1-213ENST00000549414 A8MXQ7 604 aa17.27■□□□□ 0.36
CUX1-213ENST00000549414 TCF7P36402 384 aaPredicted RBP17.27■□□□□ 0.36
CUX1-213ENST00000549414 ORC1Q13415 861 aa17.27■□□□□ 0.36
CUX1-213ENST00000549414 KCTD19Q17RG1 926 aaPredicted RBP17.27■□□□□ 0.36
CUX1-213ENST00000549414 NLRP14Q86W24 1093 aa17.27■□□□□ 0.36
CUX1-213ENST00000549414 PURBQ96QR8 312 aaKnown RBP17.27■□□□□ 0.36
CUX1-213ENST00000549414 ASNSD1Q9NWL6 643 aa17.27■□□□□ 0.36
CUX1-213ENST00000549414 SNX9Q9Y5X1 595 aa17.27■□□□□ 0.36
CUX1-213ENST00000549414 SEC24CP53992 1094 aa17.27■□□□□ 0.36
CUX1-213ENST00000549414 ARL4CP56559 192 aa17.27■□□□□ 0.36
CUX1-213ENST00000549414 CDK17Q00537 523 aa17.27■□□□□ 0.36
CUX1-213ENST00000549414 ECM1Q16610 540 aa17.27■□□□□ 0.36
CUX1-213ENST00000549414 ANKMY2Q8IV38 441 aa17.27■□□□□ 0.36
CUX1-213ENST00000549414 DISP2A7MBM2 1401 aa17.27■□□□□ 0.36
CUX1-213ENST00000549414 PHF2O75151 1096 aa17.27■□□□□ 0.36
CUX1-213ENST00000549414 SPAG7O75391 227 aa17.27■□□□□ 0.36
CUX1-213ENST00000549414 CSDE1O75534 798 aaKnown RBP17.27■□□□□ 0.36
CUX1-213ENST00000549414 SMTNL2Q2TAL5 461 aa17.27■□□□□ 0.36
CUX1-213ENST00000549414 WDR59Q6PJI9 974 aa17.27■□□□□ 0.36
CUX1-213ENST00000549414 DNAJC19Q96DA6 116 aa17.27■□□□□ 0.36
CUX1-213ENST00000549414 SNF8Q96H20 258 aa17.27■□□□□ 0.36
CUX1-213ENST00000549414 PITPNM3Q9BZ71 974 aa17.27■□□□□ 0.36
CUX1-213ENST00000549414 OLFML3Q9NRN5 406 aa17.27■□□□□ 0.36
CUX1-213ENST00000549414 DBR1Q9UK59 544 aaKnown RBP17.27■□□□□ 0.36
CUX1-213ENST00000549414 RCCD1A6NED2 376 aa17.27■□□□□ 0.35
CUX1-213ENST00000549414 OATP04181 439 aa17.27■□□□□ 0.35
CUX1-213ENST00000549414 SLC12A3P55017 1021 aa17.27■□□□□ 0.35
CUX1-213ENST00000549414 DGKZQ13574 1117 aa17.27■□□□□ 0.35
CUX1-213ENST00000549414 TFDP2Q14188 446 aa17.27■□□□□ 0.35
CUX1-213ENST00000549414 MUM1L1Q5H9M0 696 aa17.27■□□□□ 0.35
CUX1-213ENST00000549414 SPOPLQ6IQ16 392 aa17.27■□□□□ 0.35
CUX1-213ENST00000549414 RAPH1Q70E73 1250 aa17.27■□□□□ 0.35
CUX1-213ENST00000549414 DCLK2Q8N568 766 aa17.27■□□□□ 0.35
CUX1-213ENST00000549414 IFT122Q9HBG6 1241 aa17.27■□□□□ 0.35
CUX1-213ENST00000549414 AGO4Q9HCK5 861 aaKnown RBP17.27■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms