RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 CSGALNACT2Q8N6G5 542 aa18.62■□□□□ 0.57
LIG1-204ENST00000542460 URGCPQ8TCY9 931 aa18.62■□□□□ 0.57
LIG1-204ENST00000542460 SNX27Q96L92 541 aa18.62■□□□□ 0.57
LIG1-204ENST00000542460 ZFP42Q96MM3 310 aa18.62■□□□□ 0.57
LIG1-204ENST00000542460 CASD1Q96PB1 797 aa18.62■□□□□ 0.57
LIG1-204ENST00000542460 MED15Q96RN5 788 aa18.62■□□□□ 0.57
LIG1-204ENST00000542460 RPS6KC1Q96S38 1066 aa18.62■□□□□ 0.57
LIG1-204ENST00000542460 NAT10Q9H0A0 1025 aaKnown RBP18.62■□□□□ 0.57
LIG1-204ENST00000542460 GZF1Q9H116 711 aaPredicted RBP18.62■□□□□ 0.57
LIG1-204ENST00000542460 DNAJC25Q9H1X3 360 aa18.62■□□□□ 0.57
LIG1-204ENST00000542460 RC3H2Q9HBD1 1191 aaKnown RBP18.62■□□□□ 0.57
LIG1-204ENST00000542460 RBAKQ9NYW8 714 aaPredicted RBP18.62■□□□□ 0.57
LIG1-204ENST00000542460 KANSL3Q9P2N6 904 aa18.62■□□□□ 0.57
LIG1-204ENST00000542460 INPP5FQ9Y2H2 1132 aa18.62■□□□□ 0.57
LIG1-204ENST00000542460 TBKBP1A7MCY6 615 aa18.61■□□□□ 0.57
LIG1-204ENST00000542460 MAPK13O15264 365 aa18.61■□□□□ 0.57
LIG1-204ENST00000542460 PSMC2P35998 433 aaKnown RBP18.61■□□□□ 0.57
LIG1-204ENST00000542460 GATMP50440 423 aa18.61■□□□□ 0.57
LIG1-204ENST00000542460 ANO6Q4KMQ2 910 aa18.61■□□□□ 0.57
LIG1-204ENST00000542460 XKR4Q5GH76 650 aa18.61■□□□□ 0.57
LIG1-204ENST00000542460 FAM109BQ6ICB4 259 aaPredicted RBP18.61■□□□□ 0.57
LIG1-204ENST00000542460 C11orf57Q6ZUT1 292 aaPredicted RBP18.61■□□□□ 0.57
LIG1-204ENST00000542460 GSTCDQ8NEC7 633 aa18.61■□□□□ 0.57
LIG1-204ENST00000542460 MKNK1Q9BUB5 465 aa18.61■□□□□ 0.57
LIG1-204ENST00000542460 MRPL9Q9BYD2 267 aaKnown RBP18.61■□□□□ 0.57
LIG1-204ENST00000542460 ASB7Q9H672 318 aa18.61■□□□□ 0.57
LIG1-204ENST00000542460 CNTN3Q9P232 1028 aa18.61■□□□□ 0.57
LIG1-204ENST00000542460 LACTBL1A8MY62 500 aa18.6■□□□□ 0.57
LIG1-204ENST00000542460 MEFVO15553 781 aaPredicted RBP18.6■□□□□ 0.57
LIG1-204ENST00000542460 AKAP3O75969 853 aa18.6■□□□□ 0.57
LIG1-204ENST00000542460 IL18RAPO95256 599 aa18.6■□□□□ 0.57
LIG1-204ENST00000542460 CASP4P49662 377 aa18.6■□□□□ 0.57
LIG1-204ENST00000542460 AFF1P51825 1210 aaKnown RBP18.6■□□□□ 0.57
LIG1-204ENST00000542460 LRRC55Q6ZSA7 311 aa18.6■□□□□ 0.57
LIG1-204ENST00000542460 CMTR2Q8IYT2 770 aaKnown RBP18.6■□□□□ 0.57
LIG1-204ENST00000542460 FAM212AQ96EL1 285 aa18.6■□□□□ 0.57
LIG1-204ENST00000542460 EEF2KMTQ96G04 330 aa18.6■□□□□ 0.57
LIG1-204ENST00000542460 MFSD14AQ96MC6 490 aa18.6■□□□□ 0.57
LIG1-204ENST00000542460 CEP63Q96MT8 703 aa18.6■□□□□ 0.57
LIG1-204ENST00000542460 TSPAN18Q96SJ8 248 aa18.6■□□□□ 0.57
LIG1-204ENST00000542460 SMIM28A0A1B0GU29 152 aa18.59■□□□□ 0.57
LIG1-204ENST00000542460 GRXCR1A8MXD5 290 aa18.59■□□□□ 0.57
LIG1-204ENST00000542460 SOX1O00570 391 aaPredicted RBP18.59■□□□□ 0.57
LIG1-204ENST00000542460 PTGESO14684 152 aa18.59■□□□□ 0.57
LIG1-204ENST00000542460 SLC16A3O15427 465 aaKnown RBP18.59■□□□□ 0.57
LIG1-204ENST00000542460 FGFR1OPO95684 399 aaKnown RBP18.59■□□□□ 0.57
LIG1-204ENST00000542460 POMCP01189 267 aa18.59■□□□□ 0.57
LIG1-204ENST00000542460 KCNE1P15382 129 aa18.59■□□□□ 0.57
LIG1-204ENST00000542460 SCNN1GP51170 649 aa18.59■□□□□ 0.57
LIG1-204ENST00000542460 RABGGTBP53611 331 aa18.59■□□□□ 0.57
LIG1-204ENST00000542460 BTG3Q14201 252 aaPredicted RBP18.59■□□□□ 0.57
LIG1-204ENST00000542460 SURF1Q15526 300 aa18.59■□□□□ 0.57
LIG1-204ENST00000542460 TPD52L1Q16890 204 aaPredicted RBP18.59■□□□□ 0.57
LIG1-204ENST00000542460 PAN2Q504Q3 1202 aaKnown RBP18.59■□□□□ 0.57
LIG1-204ENST00000542460 FILIP1Q7Z7B0 1213 aa18.59■□□□□ 0.57
LIG1-204ENST00000542460 ENOX1Q8TC92 643 aaKnown RBP18.59■□□□□ 0.57
LIG1-204ENST00000542460 SRRTQ9BXP5 876 aaKnown RBP18.59■□□□□ 0.57
LIG1-204ENST00000542460 CXCL16Q9H2A7 254 aa18.59■□□□□ 0.57
LIG1-204ENST00000542460 MIOSQ9NXC5 875 aa18.59■□□□□ 0.57
LIG1-204ENST00000542460 PCDHA11Q9Y5I1 949 aa18.59■□□□□ 0.57
LIG1-204ENST00000542460 THP07101 528 aa18.59■□□□□ 0.57
LIG1-204ENST00000542460 EPB41P11171 864 aaKnown RBP18.59■□□□□ 0.57
LIG1-204ENST00000542460 RNASELQ05823 741 aaKnown RBP18.59■□□□□ 0.57
LIG1-204ENST00000542460 CYP24A1Q07973 514 aa18.59■□□□□ 0.57
LIG1-204ENST00000542460 GRIK3Q13003 919 aa18.59■□□□□ 0.57
LIG1-204ENST00000542460 FAM186BQ8IYM0 893 aa18.59■□□□□ 0.57
LIG1-204ENST00000542460 LRRC43Q8N309 656 aa18.59■□□□□ 0.57
LIG1-204ENST00000542460 LRCH3Q96II8 777 aa18.59■□□□□ 0.57
LIG1-204ENST00000542460 ZMAT2Q96NC0 199 aaKnown RBP18.59■□□□□ 0.57
LIG1-204ENST00000542460 TBC1D13Q9NVG8 400 aa18.59■□□□□ 0.57
LIG1-204ENST00000542460 CAVIN2O95810 425 aa18.58■□□□□ 0.56
LIG1-204ENST00000542460 PSMD6Q15008 389 aa18.58■□□□□ 0.56
LIG1-204ENST00000542460 GLRA4Q5JXX5 417 aa18.58■□□□□ 0.56
LIG1-204ENST00000542460 SPATA1Q5VX52 437 aa18.58■□□□□ 0.56
LIG1-204ENST00000542460 INTS8Q75QN2 995 aaKnown RBP18.58■□□□□ 0.56
LIG1-204ENST00000542460 NT5DC4Q86YG4 428 aa18.58■□□□□ 0.56
LIG1-204ENST00000542460 FIBCD1Q8N539 461 aa18.58■□□□□ 0.56
LIG1-204ENST00000542460 SP7Q8TDD2 431 aaPredicted RBP18.58■□□□□ 0.56
LIG1-204ENST00000542460 PPP1R10Q96QC0 940 aaKnown RBP18.58■□□□□ 0.56
LIG1-204ENST00000542460 FNBP1Q96RU3 617 aa18.58■□□□□ 0.56
LIG1-204ENST00000542460 BPIFA3Q9BQP9 254 aa18.58■□□□□ 0.56
LIG1-204ENST00000542460 PDE11AQ9HCR9 933 aa18.58■□□□□ 0.56
LIG1-204ENST00000542460 SLC38A7Q9NVC3 462 aa18.58■□□□□ 0.56
LIG1-204ENST00000542460 DERAQ9Y315 318 aa18.58■□□□□ 0.56
LIG1-204ENST00000542460 C2CD2Q9Y426 696 aa18.58■□□□□ 0.56
LIG1-204ENST00000542460 TULP1O00294 542 aaPredicted RBP18.57■□□□□ 0.56
LIG1-204ENST00000542460 GNA14O95837 355 aa18.57■□□□□ 0.56
LIG1-204ENST00000542460 KRT13P13646 458 aa18.57■□□□□ 0.56
LIG1-204ENST00000542460 ZNF165P49910 485 aa18.57■□□□□ 0.56
LIG1-204ENST00000542460 RAB30Q15771 203 aa18.57■□□□□ 0.56
LIG1-204ENST00000542460 LRIT3Q3SXY7 679 aa18.57■□□□□ 0.56
LIG1-204ENST00000542460 LRSAM1Q6UWE0 723 aa18.57■□□□□ 0.56
LIG1-204ENST00000542460 USP37Q86T82 979 aa18.57■□□□□ 0.56
LIG1-204ENST00000542460 CCDC127Q96BQ5 260 aa18.57■□□□□ 0.56
LIG1-204ENST00000542460 KIF12Q96FN5 646 aa18.57■□□□□ 0.56
LIG1-204ENST00000542460 FAM193BQ96PV7 902 aaPredicted RBP18.57■□□□□ 0.56
LIG1-204ENST00000542460 MSRAQ9UJ68 235 aa18.57■□□□□ 0.56
LIG1-204ENST00000542460 PLAGL2Q9UPG8 496 aa18.57■□□□□ 0.56
LIG1-204ENST00000542460 GTF3C5Q9Y5Q8 519 aaPredicted RBP18.57■□□□□ 0.56
LIG1-204ENST00000542460 XPOTO43592 962 aaKnown RBP18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms