RNA–Protein interactions for RNA: ENST00000542310.1

VPS33A-206, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 756 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-206ENST00000542310 TTPALQ9BTX7 342 aa17.18■□□□□ 0.34
VPS33A-206ENST00000542310 WDR6Q9NNW5 1121 aaKnown RBP17.18■□□□□ 0.34
VPS33A-206ENST00000542310 KMT5AQ9NQR1 393 aa17.18■□□□□ 0.34
VPS33A-206ENST00000542310 TOPORSQ9NS56 1045 aaPredicted RBP17.18■□□□□ 0.34
VPS33A-206ENST00000542310 CCDC195A0A1B0GUA6 201 aa17.17■□□□□ 0.34
VPS33A-206ENST00000542310 CCDC169A6NNP5 214 aa17.17■□□□□ 0.34
VPS33A-206ENST00000542310 TGM5O43548 720 aa17.17■□□□□ 0.34
VPS33A-206ENST00000542310 PTPN5P54829 565 aa17.17■□□□□ 0.34
VPS33A-206ENST00000542310 ZNF568Q3ZCX4 644 aa17.17■□□□□ 0.34
VPS33A-206ENST00000542310 LILRA6Q6PI73 481 aa17.17■□□□□ 0.34
VPS33A-206ENST00000542310 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.17■□□□□ 0.34
VPS33A-206ENST00000542310 KCNK18Q7Z418 384 aa17.17■□□□□ 0.34
VPS33A-206ENST00000542310 FEZF2Q8TBJ5 459 aa17.17■□□□□ 0.34
VPS33A-206ENST00000542310 B3GALT6Q96L58 329 aa17.17■□□□□ 0.34
VPS33A-206ENST00000542310 AK8Q96MA6 479 aa17.17■□□□□ 0.34
VPS33A-206ENST00000542310 ACO2Q99798 780 aaKnown RBP17.17■□□□□ 0.34
VPS33A-206ENST00000542310 CCDC94Q9BW85 323 aaPredicted RBP17.17■□□□□ 0.34
VPS33A-206ENST00000542310 CDT1Q9H211 546 aa17.17■□□□□ 0.34
VPS33A-206ENST00000542310 PTPRHQ9HD43 1115 aa17.17■□□□□ 0.34
VPS33A-206ENST00000542310 CACNG4Q9UBN1 327 aa17.17■□□□□ 0.34
VPS33A-206ENST00000542310 FBXW11Q9UKB1 542 aa17.17■□□□□ 0.34
VPS33A-206ENST00000542310 SMC3Q9UQE7 1217 aa17.17■□□□□ 0.34
VPS33A-206ENST00000542310 USP20Q9Y2K6 914 aa17.17■□□□□ 0.34
VPS33A-206ENST00000542310 GDAQ9Y2T3 454 aa17.17■□□□□ 0.34
VPS33A-206ENST00000542310 BMP15O95972 392 aa17.16■□□□□ 0.34
VPS33A-206ENST00000542310 PROZP22891 400 aa17.16■□□□□ 0.34
VPS33A-206ENST00000542310 CDC25AP30304 524 aa17.16■□□□□ 0.34
VPS33A-206ENST00000542310 YARSP54577 528 aaKnown RBP17.16■□□□□ 0.34
VPS33A-206ENST00000542310 PSMD5Q16401 504 aa17.16■□□□□ 0.34
VPS33A-206ENST00000542310 TMEM119Q4V9L6 283 aa17.16■□□□□ 0.34
VPS33A-206ENST00000542310 XKR4Q5GH76 650 aa17.16■□□□□ 0.34
VPS33A-206ENST00000542310 TAS1R3Q7RTX0 852 aa17.16■□□□□ 0.34
VPS33A-206ENST00000542310 SYT2Q8N9I0 419 aaPredicted RBP17.16■□□□□ 0.34
VPS33A-206ENST00000542310 HASPINQ8TF76 798 aa17.16■□□□□ 0.34
VPS33A-206ENST00000542310 SPIRE2Q8WWL2 714 aa17.16■□□□□ 0.34
VPS33A-206ENST00000542310 SMG7Q92540 1137 aaKnown RBP17.16■□□□□ 0.34
VPS33A-206ENST00000542310 RABGGTAQ92696 567 aa17.16■□□□□ 0.34
VPS33A-206ENST00000542310 KCNN1Q92952 543 aa17.16■□□□□ 0.34
VPS33A-206ENST00000542310 ZNF707Q96C28 371 aaPredicted RBP17.16■□□□□ 0.34
VPS33A-206ENST00000542310 NTPCRQ9BSD7 190 aaKnown RBP17.16■□□□□ 0.34
VPS33A-206ENST00000542310 IGSF9Q9P2J2 1179 aa17.16■□□□□ 0.34
VPS33A-206ENST00000542310 LIMD1Q9UGP4 676 aa17.16■□□□□ 0.34
VPS33A-206ENST00000542310 VWA3AA6NCI4 1184 aa17.15■□□□□ 0.34
VPS33A-206ENST00000542310 RFPL2O75678 378 aa17.15■□□□□ 0.34
VPS33A-206ENST00000542310 ASGR2P07307 311 aa17.15■□□□□ 0.34
VPS33A-206ENST00000542310 MCF2P10911 925 aa17.15■□□□□ 0.34
VPS33A-206ENST00000542310 HOXA9P31269 272 aa17.15■□□□□ 0.34
VPS33A-206ENST00000542310 SLC12A3P55017 1021 aa17.15■□□□□ 0.34
VPS33A-206ENST00000542310 FAM171A1Q5VUB5 890 aa17.15■□□□□ 0.34
VPS33A-206ENST00000542310 MPZL3Q6UWV2 235 aa17.15■□□□□ 0.34
VPS33A-206ENST00000542310 BRAPQ7Z569 592 aa17.15■□□□□ 0.34
VPS33A-206ENST00000542310 PRSS33Q8NF86 280 aa17.15■□□□□ 0.34
VPS33A-206ENST00000542310 LNX1Q8TBB1 728 aaPredicted RBP17.15■□□□□ 0.34
VPS33A-206ENST00000542310 CDK5RAP3Q96JB5 506 aa17.15■□□□□ 0.34
VPS33A-206ENST00000542310 PNMA5Q96PV4 448 aa17.15■□□□□ 0.34
VPS33A-206ENST00000542310 CXCL16Q9H2A7 254 aa17.15■□□□□ 0.34
VPS33A-206ENST00000542310 POLD4Q9HCU8 107 aa17.15■□□□□ 0.34
VPS33A-206ENST00000542310 SLC38A7Q9NVC3 462 aa17.15■□□□□ 0.34
VPS33A-206ENST00000542310 EPS15L1Q9UBC2 864 aa17.15■□□□□ 0.34
VPS33A-206ENST00000542310 DUSP12Q9UNI6 340 aa17.15■□□□□ 0.34
VPS33A-206ENST00000542310 H0YCG3 227 aa17.14■□□□□ 0.33
VPS33A-206ENST00000542310 ABLIM1O14639 778 aa17.14■□□□□ 0.33
VPS33A-206ENST00000542310 ZMYND10O75800 440 aa17.14■□□□□ 0.33
VPS33A-206ENST00000542310 POU2F2P09086 479 aa17.14■□□□□ 0.33
VPS33A-206ENST00000542310 PLS3P13797 630 aa17.14■□□□□ 0.33
VPS33A-206ENST00000542310 SCP2P22307 547 aa17.14■□□□□ 0.33
VPS33A-206ENST00000542310 FGFR3P22607 806 aa17.14■□□□□ 0.33
VPS33A-206ENST00000542310 SMTNP53814 917 aa17.14■□□□□ 0.33
VPS33A-206ENST00000542310 VCPP55072 806 aaKnown RBP17.14■□□□□ 0.33
VPS33A-206ENST00000542310 TDGQ13569 410 aa17.14■□□□□ 0.33
VPS33A-206ENST00000542310 UPP1Q16831 310 aa17.14■□□□□ 0.33
VPS33A-206ENST00000542310 GLRA4Q5JXX5 417 aa17.14■□□□□ 0.33
VPS33A-206ENST00000542310 DCLRE1AQ6PJP8 1040 aa17.14■□□□□ 0.33
VPS33A-206ENST00000542310 PRSS55Q6UWB4 352 aaPredicted RBP17.14■□□□□ 0.33
VPS33A-206ENST00000542310 ALKAL1Q6UXT8 129 aa17.14■□□□□ 0.33
VPS33A-206ENST00000542310 PALB2Q86YC2 1186 aa17.14■□□□□ 0.33
VPS33A-206ENST00000542310 NXPE3Q969Y0 559 aa17.14■□□□□ 0.33
VPS33A-206ENST00000542310 SNX27Q96L92 541 aa17.14■□□□□ 0.33
VPS33A-206ENST00000542310 PRKD2Q9BZL6 878 aa17.14■□□□□ 0.33
VPS33A-206ENST00000542310 TRAPPC3O43617 180 aa17.13■□□□□ 0.33
VPS33A-206ENST00000542310 TOM1L1O75674 476 aa17.13■□□□□ 0.33
VPS33A-206ENST00000542310 B3GAT3O94766 335 aa17.13■□□□□ 0.33
VPS33A-206ENST00000542310 HNRNPA1P09651 372 aaKnown RBP eCLIP17.13■□□□□ 0.33
VPS33A-206ENST00000542310 KCNE1P15382 129 aa17.13■□□□□ 0.33
VPS33A-206ENST00000542310 RPL17P18621 184 aaKnown RBP17.13■□□□□ 0.33
VPS33A-206ENST00000542310 AVPR2P30518 371 aa17.13■□□□□ 0.33
VPS33A-206ENST00000542310 STRN3Q13033 797 aa17.13■□□□□ 0.33
VPS33A-206ENST00000542310 NOLC1Q14978 699 aaKnown RBP eCLIP17.13■□□□□ 0.33
VPS33A-206ENST00000542310 LIN9Q5TKA1 542 aa17.13■□□□□ 0.33
VPS33A-206ENST00000542310 ZPBP2Q6X784 338 aa17.13■□□□□ 0.33
VPS33A-206ENST00000542310 RTL10Q7L3V2 364 aa17.13■□□□□ 0.33
VPS33A-206ENST00000542310 GLYCTKQ8IVS8 523 aa17.13■□□□□ 0.33
VPS33A-206ENST00000542310 CEP120Q8N960 986 aa17.13■□□□□ 0.33
VPS33A-206ENST00000542310 TMEM161BQ8NDZ6 487 aa17.13■□□□□ 0.33
VPS33A-206ENST00000542310 DDX27Q96GQ7 796 aaKnown RBP17.13■□□□□ 0.33
VPS33A-206ENST00000542310 CLSTN3Q9BQT9 956 aa17.13■□□□□ 0.33
VPS33A-206ENST00000542310 TARS2Q9BW92 718 aaKnown RBP17.13■□□□□ 0.33
VPS33A-206ENST00000542310 IRF2BPLQ9H1B7 796 aa17.13■□□□□ 0.33
VPS33A-206ENST00000542310 CNTN3Q9P232 1028 aa17.13■□□□□ 0.33
VPS33A-206ENST00000542310 MTRRQ9UBK8 725 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms