RNA–Protein interactions for RNA: ENST00000541005.1

LTBR-208, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 583 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-208ENST00000541005 HAPLN2Q9GZV7 340 aa14.34□□□□□ -0.11
LTBR-208ENST00000541005 SCAND2PQ9GZW5 306 aaPredicted RBP14.34□□□□□ -0.11
LTBR-208ENST00000541005 CNTN3Q9P232 1028 aa14.34□□□□□ -0.11
LTBR-208ENST00000541005 PRG3Q9Y2Y8 225 aaPredicted RBP14.34□□□□□ -0.11
LTBR-208ENST00000541005 SCN1AP35498 2009 aa14.34□□□□□ -0.11
LTBR-208ENST00000541005 TMEM189-UBE2V1I3L0A0 370 aa14.33□□□□□ -0.12
LTBR-208ENST00000541005 LINC01565O15544 149 aa14.33□□□□□ -0.12
LTBR-208ENST00000541005 MEFVO15553 781 aaPredicted RBP14.33□□□□□ -0.12
LTBR-208ENST00000541005 SOD2P04179 222 aa14.33□□□□□ -0.12
LTBR-208ENST00000541005 KCNE1P15382 129 aa14.33□□□□□ -0.12
LTBR-208ENST00000541005 YARSP54577 528 aaKnown RBP14.33□□□□□ -0.12
LTBR-208ENST00000541005 NUCB2P80303 420 aa14.33□□□□□ -0.12
LTBR-208ENST00000541005 AMPD3Q01432 767 aa14.33□□□□□ -0.12
LTBR-208ENST00000541005 DLX2Q07687 328 aaPredicted RBP14.33□□□□□ -0.12
LTBR-208ENST00000541005 ALCAMQ13740 583 aa14.33□□□□□ -0.12
LTBR-208ENST00000541005 HSP90AA2PQ14568 343 aaPredicted RBP14.33□□□□□ -0.12
LTBR-208ENST00000541005 PTPN14Q15678 1187 aa14.33□□□□□ -0.12
LTBR-208ENST00000541005 KYAT1Q16773 422 aa14.33□□□□□ -0.12
LTBR-208ENST00000541005 ADALQ6DHV7 355 aa14.33□□□□□ -0.12
LTBR-208ENST00000541005 SLC39A4Q6P5W5 647 aa14.33□□□□□ -0.12
LTBR-208ENST00000541005 GPR65Q8IYL9 337 aa14.33□□□□□ -0.12
LTBR-208ENST00000541005 VN1R2Q8NFZ6 395 aa14.33□□□□□ -0.12
LTBR-208ENST00000541005 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.33□□□□□ -0.12
LTBR-208ENST00000541005 CHAMP1Q96JM3 812 aa14.33□□□□□ -0.12
LTBR-208ENST00000541005 MSLNLQ96KJ4 702 aa14.33□□□□□ -0.12
LTBR-208ENST00000541005 COL25A1Q9BXS0 654 aaPredicted RBP14.33□□□□□ -0.12
LTBR-208ENST00000541005 ADAM28Q9UKQ2 775 aa14.33□□□□□ -0.12
LTBR-208ENST00000541005 STYXL1Q9Y6J8 313 aa14.33□□□□□ -0.12
LTBR-208ENST00000541005 A0A0B4J269 797 aa14.32□□□□□ -0.12
LTBR-208ENST00000541005 FAM237AA0A1B0GTK4 181 aa14.32□□□□□ -0.12
LTBR-208ENST00000541005 SMIM28A0A1B0GU29 152 aa14.32□□□□□ -0.12
LTBR-208ENST00000541005 F8W810 466 aa14.32□□□□□ -0.12
LTBR-208ENST00000541005 H3BQ06 376 aaPredicted RBP14.32□□□□□ -0.12
LTBR-208ENST00000541005 POLR2DO15514 142 aaKnown RBP14.32□□□□□ -0.12
LTBR-208ENST00000541005 LILRB3O75022 631 aa14.32□□□□□ -0.12
LTBR-208ENST00000541005 CLTAP09496 248 aa14.32□□□□□ -0.12
LTBR-208ENST00000541005 CMA1P23946 247 aa14.32□□□□□ -0.12
LTBR-208ENST00000541005 COASYQ13057 564 aa14.32□□□□□ -0.12
LTBR-208ENST00000541005 ZC2HC1CQ53FD0 456 aaPredicted RBP14.32□□□□□ -0.12
LTBR-208ENST00000541005 RBM23Q86U06 439 aaKnown RBP14.32□□□□□ -0.12
LTBR-208ENST00000541005 CCDC65Q8IXS2 484 aa14.32□□□□□ -0.12
LTBR-208ENST00000541005 UROC1Q96N76 676 aa14.32□□□□□ -0.12
LTBR-208ENST00000541005 C7orf25Q9BPX7 421 aa14.32□□□□□ -0.12
LTBR-208ENST00000541005 IGFLR1Q9H665 355 aa14.32□□□□□ -0.12
LTBR-208ENST00000541005 MRPL44Q9H9J2 332 aaKnown RBP14.32□□□□□ -0.12
LTBR-208ENST00000541005 PLEKHA5Q9HAU0 1116 aa14.32□□□□□ -0.12
LTBR-208ENST00000541005 SLC38A7Q9NVC3 462 aa14.32□□□□□ -0.12
LTBR-208ENST00000541005 PANK4Q9NVE7 773 aa14.32□□□□□ -0.12
LTBR-208ENST00000541005 CLEC1BQ9P126 229 aa14.32□□□□□ -0.12
LTBR-208ENST00000541005 KCNH3Q9ULD8 1083 aa14.32□□□□□ -0.12
LTBR-208ENST00000541005 HPSEQ9Y251 543 aa14.32□□□□□ -0.12
LTBR-208ENST00000541005 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.32□□□□□ -0.12
LTBR-208ENST00000541005 TSC2P49815 1807 aa14.31□□□□□ -0.12
LTBR-208ENST00000541005 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.31□□□□□ -0.12
LTBR-208ENST00000541005 GRXCR2A6NFK2 248 aa14.31□□□□□ -0.12
LTBR-208ENST00000541005 CASTOR2A6NHX0 329 aa14.31□□□□□ -0.12
LTBR-208ENST00000541005 PER2O15055 1255 aa14.31□□□□□ -0.12
LTBR-208ENST00000541005 OGTO15294 1046 aa14.31□□□□□ -0.12
LTBR-208ENST00000541005 CLASP2O75122 1294 aaKnown RBP14.31□□□□□ -0.12
LTBR-208ENST00000541005 KIF4AO95239 1232 aa14.31□□□□□ -0.12
LTBR-208ENST00000541005 CXCL14O95715 111 aa14.31□□□□□ -0.12
LTBR-208ENST00000541005 URODP06132 367 aa14.31□□□□□ -0.12
LTBR-208ENST00000541005 ADRB2P07550 413 aa14.31□□□□□ -0.12
LTBR-208ENST00000541005 SRGAP2BP0DMP2 458 aa14.31□□□□□ -0.12
LTBR-208ENST00000541005 HARSP12081 509 aaKnown RBP14.31□□□□□ -0.12
LTBR-208ENST00000541005 IDEP14735 1019 aa14.31□□□□□ -0.12
LTBR-208ENST00000541005 NDUFV1P49821 464 aa14.31□□□□□ -0.12
LTBR-208ENST00000541005 CASP5P51878 434 aa14.31□□□□□ -0.12
LTBR-208ENST00000541005 OSTNP61366 133 aa14.31□□□□□ -0.12
LTBR-208ENST00000541005 DSG1Q02413 1049 aa14.31□□□□□ -0.12
LTBR-208ENST00000541005 SMAD4Q13485 552 aaKnown RBP14.31□□□□□ -0.12
LTBR-208ENST00000541005 SLC10A6Q3KNW5 377 aa14.31□□□□□ -0.12
LTBR-208ENST00000541005 HERC4Q5GLZ8 1057 aaPredicted RBP14.31□□□□□ -0.12
LTBR-208ENST00000541005 GLRA4Q5JXX5 417 aa14.31□□□□□ -0.12
LTBR-208ENST00000541005 L1TD1Q5T7N2 865 aaKnown RBP14.31□□□□□ -0.12
LTBR-208ENST00000541005 SLFN12LQ6IEE8 588 aa14.31□□□□□ -0.12
LTBR-208ENST00000541005 FUT10Q6P4F1 479 aa14.31□□□□□ -0.12
LTBR-208ENST00000541005 SMRP1Q8NCR6 262 aa14.31□□□□□ -0.12
LTBR-208ENST00000541005 ADAMTS19Q8TE59 1207 aa14.31□□□□□ -0.12
LTBR-208ENST00000541005 ZMAT2Q96NC0 199 aaKnown RBP14.31□□□□□ -0.12
LTBR-208ENST00000541005 PAAF1Q9BRP4 392 aa14.31□□□□□ -0.12
LTBR-208ENST00000541005 CHST7Q9NS84 486 aa14.31□□□□□ -0.12
LTBR-208ENST00000541005 CACNG4Q9UBN1 327 aa14.31□□□□□ -0.12
LTBR-208ENST00000541005 USP25Q9UHP3 1055 aa14.31□□□□□ -0.12
LTBR-208ENST00000541005 CD207Q9UJ71 328 aa14.31□□□□□ -0.12
LTBR-208ENST00000541005 SSX2IPQ9Y2D8 614 aa14.31□□□□□ -0.12
LTBR-208ENST00000541005 SF3B1O75533 1304 aaKnown RBP eCLIP14.31□□□□□ -0.12
LTBR-208ENST00000541005 DOCK6Q96HP0 2047 aa14.31□□□□□ -0.12
LTBR-208ENST00000541005 A0A1W2PQ27 194 aa14.3□□□□□ -0.12
LTBR-208ENST00000541005 A0A1W2PQ64 194 aa14.3□□□□□ -0.12
LTBR-208ENST00000541005 A0A1W2PQD8 194 aa14.3□□□□□ -0.12
LTBR-208ENST00000541005 TTC26A0AVF1 554 aa14.3□□□□□ -0.12
LTBR-208ENST00000541005 ACTN4O43707 911 aaKnown RBP14.3□□□□□ -0.12
LTBR-208ENST00000541005 GCNT3O95395 438 aa14.3□□□□□ -0.12
LTBR-208ENST00000541005 SLFN14P0C7P3 912 aa14.3□□□□□ -0.12
LTBR-208ENST00000541005 CXCL8P10145 99 aa14.3□□□□□ -0.12
LTBR-208ENST00000541005 PFKFB1P16118 471 aa14.3□□□□□ -0.12
LTBR-208ENST00000541005 GLUD2P49448 558 aa14.3□□□□□ -0.12
LTBR-208ENST00000541005 POU5F1Q01860 360 aaKnown RBP14.3□□□□□ -0.12
LTBR-208ENST00000541005 SOX4Q06945 474 aaPredicted RBP14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms