RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 TBC1D7Q9P0N9 293 aa16.5■□□□□ 0.23
UBE3B-212ENST00000540230 RCOR1Q9UKL0 485 aa16.5■□□□□ 0.23
UBE3B-212ENST00000540230 HCFC2Q9Y5Z7 792 aa16.5■□□□□ 0.23
UBE3B-212ENST00000540230 IRAK3Q9Y616 596 aa16.5■□□□□ 0.23
UBE3B-212ENST00000540230 TISP43B9A030 160 aa16.49■□□□□ 0.23
UBE3B-212ENST00000540230 H0YCG3 227 aa16.49■□□□□ 0.23
UBE3B-212ENST00000540230 MBTPS2O43462 519 aa16.49■□□□□ 0.23
UBE3B-212ENST00000540230 LILRB3O75022 631 aa16.49■□□□□ 0.23
UBE3B-212ENST00000540230 CLASP2O75122 1294 aaKnown RBP16.49■□□□□ 0.23
UBE3B-212ENST00000540230 KIF4AO95239 1232 aa16.49■□□□□ 0.23
UBE3B-212ENST00000540230 PIGRP01833 764 aa16.49■□□□□ 0.23
UBE3B-212ENST00000540230 SOD2P04179 222 aa16.49■□□□□ 0.23
UBE3B-212ENST00000540230 SOX4Q06945 474 aaPredicted RBP16.49■□□□□ 0.23
UBE3B-212ENST00000540230 XKR4Q5GH76 650 aa16.49■□□□□ 0.23
UBE3B-212ENST00000540230 ZBTB41Q5SVQ8 909 aa16.49■□□□□ 0.23
UBE3B-212ENST00000540230 FUT10Q6P4F1 479 aa16.49■□□□□ 0.23
UBE3B-212ENST00000540230 APBB1IPQ7Z5R6 666 aaPredicted RBP16.49■□□□□ 0.23
UBE3B-212ENST00000540230 MAP4K3Q8IVH8 894 aa16.49■□□□□ 0.23
UBE3B-212ENST00000540230 TMEM130Q8N3G9 435 aa16.49■□□□□ 0.23
UBE3B-212ENST00000540230 HERC2P3Q9BVR0 1158 aa16.49■□□□□ 0.23
UBE3B-212ENST00000540230 CFAP45Q9UL16 551 aa16.49■□□□□ 0.23
UBE3B-212ENST00000540230 NCOR1O75376 2440 aa16.48■□□□□ 0.23
UBE3B-212ENST00000540230 SMIM28A0A1B0GU29 152 aa16.48■□□□□ 0.23
UBE3B-212ENST00000540230 FRMD3A2A2Y4 597 aa16.48■□□□□ 0.23
UBE3B-212ENST00000540230 C2CD2LO14523 706 aa16.48■□□□□ 0.23
UBE3B-212ENST00000540230 HNRNPDLO14979 420 aaKnown RBP16.48■□□□□ 0.23
UBE3B-212ENST00000540230 CLDN3O15551 220 aa16.48■□□□□ 0.23
UBE3B-212ENST00000540230 PPP1R37O75864 691 aa16.48■□□□□ 0.23
UBE3B-212ENST00000540230 IDEP14735 1019 aa16.48■□□□□ 0.23
UBE3B-212ENST00000540230 TNFSF9P41273 254 aa16.48■□□□□ 0.23
UBE3B-212ENST00000540230 LIG4P49917 911 aa16.48■□□□□ 0.23
UBE3B-212ENST00000540230 CASP5P51878 434 aa16.48■□□□□ 0.23
UBE3B-212ENST00000540230 KCNA1Q09470 495 aa16.48■□□□□ 0.23
UBE3B-212ENST00000540230 HSP90AA2PQ14568 343 aaPredicted RBP16.48■□□□□ 0.23
UBE3B-212ENST00000540230 RESP18Q5W5W9 173 aa16.48■□□□□ 0.23
UBE3B-212ENST00000540230 ZNF720Q7Z2F6 126 aa16.48■□□□□ 0.23
UBE3B-212ENST00000540230 SMRP1Q8NCR6 262 aa16.48■□□□□ 0.23
UBE3B-212ENST00000540230 ACAP3Q96P50 834 aa16.48■□□□□ 0.23
UBE3B-212ENST00000540230 COLEC11Q9BWP8 271 aa16.48■□□□□ 0.23
UBE3B-212ENST00000540230 CD320Q9NPF0 282 aa16.48■□□□□ 0.23
UBE3B-212ENST00000540230 KBTBD4Q9NVX7 518 aa16.48■□□□□ 0.23
UBE3B-212ENST00000540230 CD207Q9UJ71 328 aa16.48■□□□□ 0.23
UBE3B-212ENST00000540230 ADAM28Q9UKQ2 775 aa16.48■□□□□ 0.23
UBE3B-212ENST00000540230 VWA8A3KMH1 1905 aa16.47■□□□□ 0.23
UBE3B-212ENST00000540230 ANKRD63C9JTQ0 380 aa16.47■□□□□ 0.23
UBE3B-212ENST00000540230 POLR2DO15514 142 aaKnown RBP16.47■□□□□ 0.23
UBE3B-212ENST00000540230 FAM189A1O60320 539 aa16.47■□□□□ 0.23
UBE3B-212ENST00000540230 NR1I2O75469 434 aa16.47■□□□□ 0.23
UBE3B-212ENST00000540230 CNPP09543 421 aaKnown RBP16.47■□□□□ 0.23
UBE3B-212ENST00000540230 CXCL8P10145 99 aa16.47■□□□□ 0.23
UBE3B-212ENST00000540230 EPCAMP16422 314 aa16.47■□□□□ 0.23
UBE3B-212ENST00000540230 MATR3P43243 847 aaKnown RBP eCLIP16.47■□□□□ 0.23
UBE3B-212ENST00000540230 YARSP54577 528 aaKnown RBP16.47■□□□□ 0.23
UBE3B-212ENST00000540230 BECN1Q14457 450 aa16.47■□□□□ 0.23
UBE3B-212ENST00000540230 SLC10A6Q3KNW5 377 aa16.47■□□□□ 0.23
UBE3B-212ENST00000540230 TMEM184AQ6ZMB5 413 aa16.47■□□□□ 0.23
UBE3B-212ENST00000540230 FEZF2Q8TBJ5 459 aa16.47■□□□□ 0.23
UBE3B-212ENST00000540230 LEO1Q8WVC0 666 aaPredicted RBP16.47■□□□□ 0.23
UBE3B-212ENST00000540230 APOL5Q9BWW9 433 aa16.47■□□□□ 0.23
UBE3B-212ENST00000540230 STRA6Q9BX79 667 aa16.47■□□□□ 0.23
UBE3B-212ENST00000540230 ST6GALNAC4Q9H4F1 302 aa16.47■□□□□ 0.23
UBE3B-212ENST00000540230 TOPORSQ9NS56 1045 aaPredicted RBP16.47■□□□□ 0.23
UBE3B-212ENST00000540230 CNTN3Q9P232 1028 aa16.47■□□□□ 0.23
UBE3B-212ENST00000540230 CDH22Q9UJ99 828 aa16.47■□□□□ 0.23
UBE3B-212ENST00000540230 PLXNA3P51805 1871 aa16.47■□□□□ 0.23
UBE3B-212ENST00000540230 MYBP10242 640 aa16.46■□□□□ 0.23
UBE3B-212ENST00000540230 CASP1P29466 404 aa16.46■□□□□ 0.23
UBE3B-212ENST00000540230 CLCNKBP51801 687 aa16.46■□□□□ 0.23
UBE3B-212ENST00000540230 COASYQ13057 564 aa16.46■□□□□ 0.23
UBE3B-212ENST00000540230 SMAD4Q13485 552 aaKnown RBP16.46■□□□□ 0.23
UBE3B-212ENST00000540230 KIAA0319Q5VV43 1072 aa16.46■□□□□ 0.23
UBE3B-212ENST00000540230 ANKRD54Q6NXT1 300 aa16.46■□□□□ 0.23
UBE3B-212ENST00000540230 SYCE2Q6PIF2 218 aa16.46■□□□□ 0.23
UBE3B-212ENST00000540230 CD300LGQ6UXG3 332 aa16.46■□□□□ 0.23
UBE3B-212ENST00000540230 C3orf58Q8NDZ4 430 aa16.46■□□□□ 0.23
UBE3B-212ENST00000540230 GLIS3Q8NEA6 775 aa16.46■□□□□ 0.23
UBE3B-212ENST00000540230 HPS3Q969F9 1004 aa16.46■□□□□ 0.23
UBE3B-212ENST00000540230 KLHL5Q96PQ7 755 aa16.46■□□□□ 0.23
UBE3B-212ENST00000540230 TRIM9Q9C026 710 aa16.46■□□□□ 0.23
UBE3B-212ENST00000540230 TNMDQ9H2S6 317 aa16.46■□□□□ 0.23
UBE3B-212ENST00000540230 MRPL44Q9H9J2 332 aaKnown RBP16.46■□□□□ 0.23
UBE3B-212ENST00000540230 CHST7Q9NS84 486 aa16.46■□□□□ 0.23
UBE3B-212ENST00000540230 PANK4Q9NVE7 773 aa16.46■□□□□ 0.23
UBE3B-212ENST00000540230 SEL1LQ9UBV2 794 aa16.46■□□□□ 0.23
UBE3B-212ENST00000540230 TADA2AO75478 443 aa16.45■□□□□ 0.22
UBE3B-212ENST00000540230 URODP06132 367 aa16.45■□□□□ 0.22
UBE3B-212ENST00000540230 GAP43P17677 238 aa16.45■□□□□ 0.22
UBE3B-212ENST00000540230 GLUD2P49448 558 aa16.45■□□□□ 0.22
UBE3B-212ENST00000540230 KRT85P78386 507 aa16.45■□□□□ 0.22
UBE3B-212ENST00000540230 DSG1Q02413 1049 aa16.45■□□□□ 0.22
UBE3B-212ENST00000540230 SPAG1Q07617 926 aa16.45■□□□□ 0.22
UBE3B-212ENST00000540230 BMS1Q14692 1282 aaKnown RBP16.45■□□□□ 0.22
UBE3B-212ENST00000540230 SMAD2Q15796 467 aaKnown RBP16.45■□□□□ 0.22
UBE3B-212ENST00000540230 HERC4Q5GLZ8 1057 aaPredicted RBP16.45■□□□□ 0.22
UBE3B-212ENST00000540230 SLC22A17Q8WUG5 538 aa16.45■□□□□ 0.22
UBE3B-212ENST00000540230 C18orf25Q96B23 403 aaPredicted RBP16.45■□□□□ 0.22
UBE3B-212ENST00000540230 OLFML3Q9NRN5 406 aa16.45■□□□□ 0.22
UBE3B-212ENST00000540230 MRPL17Q9NRX2 175 aaKnown RBP16.45■□□□□ 0.22
UBE3B-212ENST00000540230 ANK1P16157 1881 aa16.45■□□□□ 0.22
UBE3B-212ENST00000540230 A0A0B4J269 797 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms