RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 XXYLT1Q8NBI6 393 aa12.01□□□□□ -0.49
SYNE1-237ENST00000539504 ARMC2Q8NEN0 867 aa12.01□□□□□ -0.49
SYNE1-237ENST00000539504 LMO3Q8TAP4 145 aa12.01□□□□□ -0.49
SYNE1-237ENST00000539504 HAO1Q9UJM8 370 aa12.01□□□□□ -0.49
SYNE1-237ENST00000539504 UPP2O95045 317 aa12□□□□□ -0.49
SYNE1-237ENST00000539504 CHRNB2P17787 502 aa12□□□□□ -0.49
SYNE1-237ENST00000539504 TNFAIP8L3Q5GJ75 292 aa12□□□□□ -0.49
SYNE1-237ENST00000539504 ZSWIM2Q8NEG5 633 aa12□□□□□ -0.49
SYNE1-237ENST00000539504 TRAIPQ9BWF2 469 aa12□□□□□ -0.49
SYNE1-237ENST00000539504 GTF3C4Q9UKN8 822 aa12□□□□□ -0.49
SYNE1-237ENST00000539504 USTQ9Y2C2 406 aa12□□□□□ -0.49
SYNE1-237ENST00000539504 CCDC189A1A4V9 331 aa12□□□□□ -0.49
SYNE1-237ENST00000539504 SERPINB2P05120 415 aa12□□□□□ -0.49
SYNE1-237ENST00000539504 GZMAP12544 262 aa12□□□□□ -0.49
SYNE1-237ENST00000539504 ALDH3A1P30838 453 aa12□□□□□ -0.49
SYNE1-237ENST00000539504 RAD23BP54727 409 aa12□□□□□ -0.49
SYNE1-237ENST00000539504 RNASELQ05823 741 aaKnown RBP12□□□□□ -0.49
SYNE1-237ENST00000539504 SIX1Q15475 284 aaPredicted RBP12□□□□□ -0.49
SYNE1-237ENST00000539504 NFIL3Q16649 462 aa12□□□□□ -0.49
SYNE1-237ENST00000539504 ABCB5Q2M3G0 1257 aa12□□□□□ -0.49
SYNE1-237ENST00000539504 SLC5A5Q92911 643 aa12□□□□□ -0.49
SYNE1-237ENST00000539504 VTI1AQ96AJ9 217 aa12□□□□□ -0.49
SYNE1-237ENST00000539504 SAAL1Q96ER3 474 aa12□□□□□ -0.49
SYNE1-237ENST00000539504 LRRC37BQ96QE4 947 aa12□□□□□ -0.49
SYNE1-237ENST00000539504 FIZ1Q96SL8 496 aa12□□□□□ -0.49
SYNE1-237ENST00000539504 MYLK2Q9H1R3 596 aa12□□□□□ -0.49
SYNE1-237ENST00000539504 ARHGEF10LQ9HCE6 1279 aa12□□□□□ -0.49
SYNE1-237ENST00000539504 HSPBP1Q9NZL4 362 aa12□□□□□ -0.49
SYNE1-237ENST00000539504 WRAP73Q9P2S5 460 aaPredicted RBP12□□□□□ -0.49
SYNE1-237ENST00000539504 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12□□□□□ -0.49
SYNE1-237ENST00000539504 DYNC1LI1Q9Y6G9 523 aaKnown RBP12□□□□□ -0.49
SYNE1-237ENST00000539504 EXOC1LA0A1B0GW35 172 aa12□□□□□ -0.49
SYNE1-237ENST00000539504 DDTLA6NHG4 134 aaPredicted RBP12□□□□□ -0.49
SYNE1-237ENST00000539504 PPP1R12AO14974 1030 aaPredicted RBP12□□□□□ -0.49
SYNE1-237ENST00000539504 UNC5CO95185 931 aa12□□□□□ -0.49
SYNE1-237ENST00000539504 ALADP13716 330 aa12□□□□□ -0.49
SYNE1-237ENST00000539504 MTFR1Q15390 333 aa12□□□□□ -0.49
SYNE1-237ENST00000539504 KIFAP3Q92845 792 aa12□□□□□ -0.49
SYNE1-237ENST00000539504 CD101Q93033 1021 aa12□□□□□ -0.49
SYNE1-237ENST00000539504 ACCSQ96QU6 501 aa12□□□□□ -0.49
SYNE1-237ENST00000539504 CRAMP1Q96RY5 1269 aa12□□□□□ -0.49
SYNE1-237ENST00000539504 SLC5A4Q9NY91 659 aa12□□□□□ -0.49
SYNE1-237ENST00000539504 UVRAGQ9P2Y5 699 aa12□□□□□ -0.49
SYNE1-237ENST00000539504 UBE4BO95155 1302 aa12□□□□□ -0.49
SYNE1-237ENST00000539504 LUC7L3O95232 432 aaKnown RBP11.99□□□□□ -0.49
SYNE1-237ENST00000539504 CETPP11597 493 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 FMO1Q01740 532 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 DAB2IPQ5VWQ8 1189 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 IZUMO3Q5VZ72 239 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 SPOCK2Q92563 424 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 DHX38Q92620 1227 aaKnown RBP11.99□□□□□ -0.49
SYNE1-237ENST00000539504 OSBPL1AQ9BXW6 950 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 TMEM117Q9H0C3 514 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 UNC45AQ9H3U1 944 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 TMEM206Q9H813 350 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 COL14A1Q05707 1796 aaKnown RBP11.99□□□□□ -0.49
SYNE1-237ENST00000539504 FAM47DPA6NHR8 397 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 PSMD10O75832 226 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 PDHA1P08559 390 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 POLR2MP0CAP2 368 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 CYP11B1P15538 503 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 TAC1P20366 129 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 FOXN2P32314 431 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 SESN3P58005 492 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 SATB1Q01826 763 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 MGAT5Q09328 741 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 SEPT7Q16181 437 aaKnown RBP11.99□□□□□ -0.49
SYNE1-237ENST00000539504 ATL2Q8NHH9 583 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 MAIP1Q8WWC4 291 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 NAF1Q96HR8 494 aaKnown RBP11.99□□□□□ -0.49
SYNE1-237ENST00000539504 KREMEN1Q96MU8 473 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 TEKT3Q9BXF9 490 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 COA1Q9GZY4 146 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 PI4KBQ9UBF8 816 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 PCDHAC2Q9Y5I4 1007 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 IGLV3-22A0A075B6J6 115 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 FSCN2O14926 492 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 MAPK13O15264 365 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 GH2P01242 217 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 ARP10275 920 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 C4orf33Q8N1A6 199 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 ZNF622Q969S3 477 aaKnown RBP eCLIP11.99□□□□□ -0.49
SYNE1-237ENST00000539504 GRAMD1AQ96CP6 724 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 NUDCD1Q96RS6 583 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 VPS37BQ9H9H4 285 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 SAYSD1Q9NPB0 183 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 SLCO1B3Q9NPD5 702 aa11.99□□□□□ -0.49
SYNE1-237ENST00000539504 R3HDM2Q9Y2K5 976 aaKnown RBP11.99□□□□□ -0.49
SYNE1-237ENST00000539504 CYP1A2P05177 515 aa11.98□□□□□ -0.49
SYNE1-237ENST00000539504 MAN1A1P33908 653 aa11.98□□□□□ -0.49
SYNE1-237ENST00000539504 APOBEC3HQ6NTF7 200 aaKnown RBP11.98□□□□□ -0.49
SYNE1-237ENST00000539504 MIER3Q7Z3K6 550 aa11.98□□□□□ -0.49
SYNE1-237ENST00000539504 LRRC8CQ8TDW0 803 aa11.98□□□□□ -0.49
SYNE1-237ENST00000539504 NT5C1BQ96P26 610 aa11.98□□□□□ -0.49
SYNE1-237ENST00000539504 RBM15Q96T37 977 aaKnown RBP eCLIP11.98□□□□□ -0.49
SYNE1-237ENST00000539504 WDR11Q9BZH6 1224 aa11.98□□□□□ -0.49
SYNE1-237ENST00000539504 NOCTQ9UK39 431 aaKnown RBP11.98□□□□□ -0.49
SYNE1-237ENST00000539504 PRR12Q9ULL5 1215 aa11.98□□□□□ -0.49
SYNE1-237ENST00000539504 PHTF1Q9UMS5 762 aa11.98□□□□□ -0.49
SYNE1-237ENST00000539504 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms