RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 PARVGQ9HBI0 331 aa12.67□□□□□ -0.38
RTN3-209ENST00000538995 SLC38A7Q9NVC3 462 aa12.67□□□□□ -0.38
RTN3-209ENST00000538995 FNIP2Q9P278 1114 aa12.67□□□□□ -0.38
RTN3-209ENST00000538995 CCDC39Q9UFE4 941 aa12.67□□□□□ -0.38
RTN3-209ENST00000538995 GTF3C3Q9Y5Q9 886 aa12.67□□□□□ -0.38
RTN3-209ENST00000538995 NPHP3-ACAD11A0A0J9YXS1 232 aa12.66□□□□□ -0.38
RTN3-209ENST00000538995 C2CD2LO14523 706 aa12.66□□□□□ -0.38
RTN3-209ENST00000538995 TEX28O15482 410 aa12.66□□□□□ -0.38
RTN3-209ENST00000538995 TBCAO75347 108 aaKnown RBP12.66□□□□□ -0.38
RTN3-209ENST00000538995 FAM13AO94988 1023 aa12.66□□□□□ -0.38
RTN3-209ENST00000538995 KIF4AO95239 1232 aa12.66□□□□□ -0.38
RTN3-209ENST00000538995 GLUD1P00367 558 aa12.66□□□□□ -0.38
RTN3-209ENST00000538995 KRT18P05783 430 aaKnown RBP12.66□□□□□ -0.38
RTN3-209ENST00000538995 MARCKSP29966 332 aaPredicted RBP12.66□□□□□ -0.38
RTN3-209ENST00000538995 DDIT3P35638 169 aa12.66□□□□□ -0.38
RTN3-209ENST00000538995 NASPP49321 788 aaPredicted RBP12.66□□□□□ -0.38
RTN3-209ENST00000538995 MCL1Q07820 350 aa12.66□□□□□ -0.38
RTN3-209ENST00000538995 MCM6Q14566 821 aa12.66□□□□□ -0.38
RTN3-209ENST00000538995 SLC39A14Q15043 492 aa12.66□□□□□ -0.38
RTN3-209ENST00000538995 PDXDC1Q6P996 788 aa12.66□□□□□ -0.38
RTN3-209ENST00000538995 ALKAL1Q6UXT8 129 aa12.66□□□□□ -0.38
RTN3-209ENST00000538995 CYP26C1Q6V0L0 522 aa12.66□□□□□ -0.38
RTN3-209ENST00000538995 C15orf39Q6ZRI6 1047 aa12.66□□□□□ -0.38
RTN3-209ENST00000538995 HAUS6Q7Z4H7 955 aa12.66□□□□□ -0.38
RTN3-209ENST00000538995 RNF135Q8IUD6 432 aa12.66□□□□□ -0.38
RTN3-209ENST00000538995 CEP120Q8N960 986 aa12.66□□□□□ -0.38
RTN3-209ENST00000538995 KRI1Q8N9T8 703 aaKnown RBP12.66□□□□□ -0.38
RTN3-209ENST00000538995 CMASQ8NFW8 434 aaPredicted RBP12.66□□□□□ -0.38
RTN3-209ENST00000538995 HDAC7Q8WUI4 952 aa12.66□□□□□ -0.38
RTN3-209ENST00000538995 EPSTI1Q96J88 318 aa12.66□□□□□ -0.38
RTN3-209ENST00000538995 SNX27Q96L92 541 aa12.66□□□□□ -0.38
RTN3-209ENST00000538995 USP28Q96RU2 1077 aa12.66□□□□□ -0.38
RTN3-209ENST00000538995 PAAF1Q9BRP4 392 aa12.66□□□□□ -0.38
RTN3-209ENST00000538995 TCHPQ9BT92 498 aa12.66□□□□□ -0.38
RTN3-209ENST00000538995 RHOBTB2Q9BYZ6 727 aa12.66□□□□□ -0.38
RTN3-209ENST00000538995 FOXD4L1Q9NU39 408 aa12.66□□□□□ -0.38
RTN3-209ENST00000538995 CNTN3Q9P232 1028 aa12.66□□□□□ -0.38
RTN3-209ENST00000538995 NR2E1Q9Y466 385 aa12.66□□□□□ -0.38
RTN3-209ENST00000538995 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.66□□□□□ -0.38
RTN3-209ENST00000538995 TDRD15B5MCY1 1934 aaKnown RBP12.66□□□□□ -0.38
RTN3-209ENST00000538995 SMIM28A0A1B0GU29 152 aa12.65□□□□□ -0.38
RTN3-209ENST00000538995 K7ENM7 598 aa12.65□□□□□ -0.38
RTN3-209ENST00000538995 CLDN3O15551 220 aa12.65□□□□□ -0.38
RTN3-209ENST00000538995 PAPLNO95428 1278 aa12.65□□□□□ -0.38
RTN3-209ENST00000538995 PIGRP01833 764 aa12.65□□□□□ -0.38
RTN3-209ENST00000538995 HSP90AA1P07900 732 aaKnown RBP12.65□□□□□ -0.38
RTN3-209ENST00000538995 KCNE1P15382 129 aa12.65□□□□□ -0.38
RTN3-209ENST00000538995 KYAT1Q16773 422 aa12.65□□□□□ -0.38
RTN3-209ENST00000538995 GLRA4Q5JXX5 417 aa12.65□□□□□ -0.38
RTN3-209ENST00000538995 ATAT1Q5SQI0 421 aa12.65□□□□□ -0.38
RTN3-209ENST00000538995 RARS2Q5T160 578 aaKnown RBP12.65□□□□□ -0.38
RTN3-209ENST00000538995 FAM173BQ6P4H8 233 aa12.65□□□□□ -0.38
RTN3-209ENST00000538995 ZBTB33Q86T24 672 aa12.65□□□□□ -0.38
RTN3-209ENST00000538995 MYCT1Q8N699 235 aa12.65□□□□□ -0.38
RTN3-209ENST00000538995 RIN2Q8WYP3 895 aaPredicted RBP12.65□□□□□ -0.38
RTN3-209ENST00000538995 PIK3R5Q8WYR1 880 aa12.65□□□□□ -0.38
RTN3-209ENST00000538995 DDX27Q96GQ7 796 aaKnown RBP12.65□□□□□ -0.38
RTN3-209ENST00000538995 RPGRIP1Q96KN7 1286 aa12.65□□□□□ -0.38
RTN3-209ENST00000538995 ZNF396Q96N95 335 aaPredicted RBP12.65□□□□□ -0.38
RTN3-209ENST00000538995 ACAP3Q96P50 834 aa12.65□□□□□ -0.38
RTN3-209ENST00000538995 TTPALQ9BTX7 342 aa12.65□□□□□ -0.38
RTN3-209ENST00000538995 APOL5Q9BWW9 433 aa12.65□□□□□ -0.38
RTN3-209ENST00000538995 C11orf16Q9NQ32 467 aa12.65□□□□□ -0.38
RTN3-209ENST00000538995 ANKFY1Q9P2R3 1169 aa12.65□□□□□ -0.38
RTN3-209ENST00000538995 SPDYE4A6NLX3 237 aa12.64□□□□□ -0.39
RTN3-209ENST00000538995 PRR33A8MZF0 331 aa12.64□□□□□ -0.39
RTN3-209ENST00000538995 HNRNPDLO14979 420 aaKnown RBP12.64□□□□□ -0.39
RTN3-209ENST00000538995 TRAK2O60296 914 aa12.64□□□□□ -0.39
RTN3-209ENST00000538995 CEBPZQ03701 1054 aaKnown RBP12.64□□□□□ -0.39
RTN3-209ENST00000538995 DHX8Q14562 1220 aaKnown RBP12.64□□□□□ -0.39
RTN3-209ENST00000538995 UPP1Q16831 310 aa12.64□□□□□ -0.39
RTN3-209ENST00000538995 SPECC1Q5M775 1068 aa12.64□□□□□ -0.39
RTN3-209ENST00000538995 RTP2Q5QGT7 225 aa12.64□□□□□ -0.39
RTN3-209ENST00000538995 RRAGBQ5VZM2 374 aa12.64□□□□□ -0.39
RTN3-209ENST00000538995 DCLRE1AQ6PJP8 1040 aa12.64□□□□□ -0.39
RTN3-209ENST00000538995 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.64□□□□□ -0.39
RTN3-209ENST00000538995 CCDC73Q6ZRK6 1079 aa12.64□□□□□ -0.39
RTN3-209ENST00000538995 USP49Q70CQ1 688 aa12.64□□□□□ -0.39
RTN3-209ENST00000538995 GPR149Q86SP6 731 aa12.64□□□□□ -0.39
RTN3-209ENST00000538995 MAP4K3Q8IVH8 894 aa12.64□□□□□ -0.39
RTN3-209ENST00000538995 LINC00301Q8NCQ3 95 aa12.64□□□□□ -0.39
RTN3-209ENST00000538995 BICD1Q96G01 975 aa12.64□□□□□ -0.39
RTN3-209ENST00000538995 CLIC6Q96NY7 704 aa12.64□□□□□ -0.39
RTN3-209ENST00000538995 LRFN3Q9BTN0 628 aa12.64□□□□□ -0.39
RTN3-209ENST00000538995 CXCL16Q9H2A7 254 aa12.64□□□□□ -0.39
RTN3-209ENST00000538995 ST6GALNAC4Q9H4F1 302 aa12.64□□□□□ -0.39
RTN3-209ENST00000538995 PLEKHA4Q9H4M7 779 aa12.64□□□□□ -0.39
RTN3-209ENST00000538995 POMKQ9H5K3 350 aa12.64□□□□□ -0.39
RTN3-209ENST00000538995 PLEKHA5Q9HAU0 1116 aa12.64□□□□□ -0.39
RTN3-209ENST00000538995 MAN1C1Q9NR34 630 aa12.64□□□□□ -0.39
RTN3-209ENST00000538995 CACNG4Q9UBN1 327 aa12.64□□□□□ -0.39
RTN3-209ENST00000538995 SEL1LQ9UBV2 794 aa12.64□□□□□ -0.39
RTN3-209ENST00000538995 MUTYHQ9UIF7 546 aa12.64□□□□□ -0.39
RTN3-209ENST00000538995 TBX20Q9UMR3 447 aa12.64□□□□□ -0.39
RTN3-209ENST00000538995 USTQ9Y2C2 406 aa12.64□□□□□ -0.39
RTN3-209ENST00000538995 TRAPPC3O43617 180 aa12.63□□□□□ -0.39
RTN3-209ENST00000538995 PPP6R2O75170 966 aa12.63□□□□□ -0.39
RTN3-209ENST00000538995 B3GAT3O94766 335 aa12.63□□□□□ -0.39
RTN3-209ENST00000538995 YEATS4O95619 227 aa12.63□□□□□ -0.39
RTN3-209ENST00000538995 CLTAP09496 248 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms