RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 DNAJC3Q13217 504 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 ATP1A4Q13733 1029 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 UBE4AQ14139 1066 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 KRT32Q14532 448 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 C16orf72Q14CZ0 275 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 CRY1Q16526 586 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 LPCAT4Q643R3 524 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 OGFOD2Q6N063 350 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 PDXDC1Q6P996 788 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 RAPH1Q70E73 1250 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 INTS8Q75QN2 995 aaKnown RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 RRAGAQ7L523 313 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 ARHGAP24Q8N264 748 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 METTL25Q8N6Q8 603 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 GBP7Q8N8V2 638 aaPredicted RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 FBXO27Q8NI29 283 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 DQX1Q8TE96 717 aaKnown RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 SREK1Q8WXA9 508 aaKnown RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 SYMPKQ92797 1274 aaKnown RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 NACC2Q96BF6 587 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 INPP4AQ96PE3 977 aaPredicted RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 TGS1Q96RS0 853 aaKnown RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 CTAGE1Q96RT6 745 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 DBNDD2Q9BQY9 259 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 CENPKQ9BS16 269 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 SLC26A6Q9BXS9 759 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 GBA3Q9H227 469 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 CABP5Q9NP86 173 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 DSEQ9UL01 958 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 CAPN11Q9UMQ6 739 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 TLL2Q9Y6L7 1015 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 RFX7Q2KHR2 1363 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 PAPPA2Q9BXP8 1791 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 H3BSA7 217 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 ABLIM1O14639 778 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 KCNQ3O43525 872 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 GPR37L1O60883 481 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 SPAG7O75391 227 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 SORBS2O94875 1100 aaKnown RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 HAUS5O94927 633 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 HSPA1AP0DMV8 641 aaKnown RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 HSPA1BP0DMV9 641 aaKnown RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 CCNB1P14635 433 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 TKTP29401 623 aaKnown RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 FOXN2P32314 431 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 SSTR3P32745 418 aaPredicted RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 RFC4P35249 363 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 TRPC1P48995 793 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 ARPC4P59998 168 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 ITIH3Q06033 890 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 SULT2A1Q06520 285 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 AIMP1Q12904 312 aaKnown RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 STK4Q13043 487 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 NCOA4Q13772 614 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 PRKG1Q13976 671 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 MAP7Q14244 749 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 CARTPTQ16568 116 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 CLPPQ16740 277 aaPredicted RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 TAF1BQ53T94 588 aaPredicted RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 TDRD12Q587J7 1177 aaKnown RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 NT5DC1Q5TFE4 455 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 LRIG3Q6UXM1 1119 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 C4orf50Q6ZRC1 276 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 SCYL3Q8IZE3 742 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 USP38Q8NB14 1042 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 HIPK4Q8NE63 616 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 CDK5RAP3Q96JB5 506 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 PWWP2AQ96N64 755 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 ZNF184Q99676 751 aaPredicted RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 SLC39A3Q9BRY0 314 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 CADM1Q9BY67 442 aaKnown RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 NACAP1Q9BZK3 213 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 NAPBQ9H115 298 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 C12orf65Q9H3J6 166 aaKnown RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 MMRN2Q9H8L6 949 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 C9orf78Q9NZ63 289 aaPredicted RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP3.97□□□□□ -1.77
MCF2-210ENST00000536274 CHPF2Q9P2E5 772 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 PDP2Q9P2J9 529 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 SEPT9Q9UHD8 586 aaPredicted RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 DBNLQ9UJU6 430 aaKnown RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 FRMD4BQ9Y2L6 1034 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 ARL2BPQ9Y2Y0 163 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 FAM32AQ9Y421 112 aaKnown RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 ZNF646O15015 1829 aaPredicted RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 MYPNQ86TC9 1320 aa3.96□□□□□ -1.77
MCF2-210ENST00000536274 LRRC53A6NM62 1247 aa3.96□□□□□ -1.78
MCF2-210ENST00000536274 SRRM3A6NNA2 597 aaPredicted RBP3.96□□□□□ -1.78
MCF2-210ENST00000536274 RNF113AO15541 343 aaKnown RBP3.96□□□□□ -1.78
MCF2-210ENST00000536274 EXOC3O60645 756 aa3.96□□□□□ -1.78
MCF2-210ENST00000536274 FBXO21O94952 628 aa3.96□□□□□ -1.78
MCF2-210ENST00000536274 PSMG1O95456 288 aa3.96□□□□□ -1.78
MCF2-210ENST00000536274 FUCA1P04066 466 aa3.96□□□□□ -1.78
MCF2-210ENST00000536274 GLULP15104 373 aa3.96□□□□□ -1.78
MCF2-210ENST00000536274 RFX1P22670 979 aa3.96□□□□□ -1.78
MCF2-210ENST00000536274 IL6STP40189 918 aaPredicted RBP3.96□□□□□ -1.78
MCF2-210ENST00000536274 NKX2-5P52952 324 aaPredicted RBP3.96□□□□□ -1.78
MCF2-210ENST00000536274 CTDSPL2Q05D32 466 aa3.96□□□□□ -1.78
MCF2-210ENST00000536274 OVGP1Q12889 678 aa3.96□□□□□ -1.78
MCF2-210ENST00000536274 DLG1Q12959 904 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 115.9 ms