RNA–Protein interactions for RNA: ENST00000534106.2

CHMP4A-208, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 5

Gene CHMP4A, Length 370 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-208ENST00000534106 NFKB2Q00653 900 aa3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 TNFAIP2Q03169 654 aa3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 PUM1Q14671 1186 aaKnown RBP eCLIP3.59□□□□□ -1.839e-8■□□□□ 9.5
CHMP4A-208ENST00000534106 FSCN1Q16658 493 aaKnown RBP3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 HERC4Q5GLZ8 1057 aaPredicted RBP3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 FAM83BQ5T0W9 1011 aa3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 UBXN11Q5T124 520 aa3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 SNRNP48Q6IEG0 339 aaKnown RBP3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 ZC3H14Q6PJT7 736 aaKnown RBP3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 MAMDC4Q6UXC1 1216 aa3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 ARMCX2Q7L311 632 aa3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 CCDC144CPQ8IYA2 1237 aa3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 ADSSL1Q8N142 457 aa3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 MB21D1Q8N884 522 aa3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 FBXO27Q8NI29 283 aa3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 PHOSPHO2Q8TCD6 241 aa3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 PPIL4Q8WUA2 492 aaKnown RBP eCLIP3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 RMDN1Q96DB5 314 aa3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 RHOVQ96L33 236 aa3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 TGS1Q96RS0 853 aaKnown RBP3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 RAD9AQ99638 391 aa3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 NOL10Q9BSC4 688 aaKnown RBP3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 FSD1Q9BTV5 496 aa3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 RSRP1Q9BUV0 290 aa3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 DSCC1Q9BVC3 393 aa3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 PRDM14Q9GZV8 571 aa3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 BCL11AQ9H165 835 aa3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 SPC25Q9HBM1 224 aa3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 RAVER2Q9HCJ3 691 aaKnown RBP3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 GINM1Q9NU53 330 aa3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 CLDND1Q9NY35 253 aa3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 VTI1BQ9UEU0 232 aa3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 SERPINB13Q9UIV8 391 aa3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 ZNF214Q9UL59 606 aaPredicted RBP3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 DIS3Q9Y2L1 958 aaKnown RBP3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 PCDHA5Q9Y5H7 936 aa3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 PTPRFP10586 1907 aa3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 TNKSO95271 1327 aa3.59□□□□□ -1.83
CHMP4A-208ENST00000534106 FAM186AA6NE01 2351 aa3.59□□□□□ -1.84
CHMP4A-208ENST00000534106 PKD1L2Q7Z442 2459 aa3.59□□□□□ -1.84
CHMP4A-208ENST00000534106 COL4A6Q14031 1691 aa3.59□□□□□ -1.84
CHMP4A-208ENST00000534106 SETXQ7Z333 2677 aaKnown RBP3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 DOCK1Q14185 1865 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 MYH3P11055 1940 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 MYO7AQ13402 2215 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 PRR23AA6NEV1 266 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 STXBP3O00186 592 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 MBTPS2O43462 519 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 SORBS3O60504 671 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 NBNO60934 754 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 CTSHP09668 335 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 ACTN1P12814 892 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 EEF2P13639 858 aaKnown RBP3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 MCM4P33991 863 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 KCNJ6P48051 423 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 NKX3-2P78367 333 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 ZNF200P98182 395 aaPredicted RBP3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 GABPAQ06546 454 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 GPM6BQ13491 265 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 COL9A2Q14055 689 aaPredicted RBP3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 MVPQ14764 893 aaKnown RBP3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 NR1I3Q14994 352 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 RTP5Q14D33 572 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 EPC2Q52LR7 807 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 FAM47CQ5HY64 1035 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 TAPT1Q6NXT6 567 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 ERMP1Q7Z2K6 904 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 BMP8AQ7Z5Y6 402 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 TLK2Q86UE8 772 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 LSRQ86X29 649 aaPredicted RBP3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 JAMLQ86YT9 394 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 SUGP1Q8IWZ8 645 aaKnown RBP3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 ANKRD35Q8N283 1001 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 MAGEB6Q8N7X4 407 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 SSH1Q8WYL5 1049 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 COPS5Q92905 334 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 CTAGE1Q96RT6 745 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 SLC9A7Q96T83 725 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 UPF3BQ9BZI7 483 aaKnown RBP3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 ANTXR1Q9H6X2 564 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 BRMS1Q9HCU9 246 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 COPRSQ9NQ92 184 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 HOMER2Q9NSB8 354 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 GFOD1Q9NXC2 390 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 MCM9Q9NXL9 1143 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 GMIPQ9P107 970 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 IMPACTQ9P2X3 320 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 SUSD2Q9UGT4 822 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 DBR1Q9UK59 544 aaKnown RBP3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 FAN1Q9Y2M0 1017 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 TMX2Q9Y320 296 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 PCDHB12Q9Y5F1 795 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 PDS5AQ29RF7 1337 aaKnown RBP3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 LRRC37A2A6NM11 1700 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 A0A1B0GUL6 1792 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 LOC285556D6RIA3 1793 aa3.58□□□□□ -1.84
CHMP4A-208ENST00000534106 PROB1E7EW31 1015 aa3.57□□□□□ -1.84
CHMP4A-208ENST00000534106 K7ESM1 405 aa3.57□□□□□ -1.84
CHMP4A-208ENST00000534106 GRM6O15303 877 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms