RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 CLTAP09496 248 aa16.42■□□□□ 0.22
CPSF1-208ENST00000532560 MYBP10242 640 aa16.42■□□□□ 0.22
CPSF1-208ENST00000532560 KCNE1P15382 129 aa16.42■□□□□ 0.22
CPSF1-208ENST00000532560 AFMP43652 599 aa16.42■□□□□ 0.22
CPSF1-208ENST00000532560 NDUFA8P51970 172 aa16.42■□□□□ 0.22
CPSF1-208ENST00000532560 SMC1AQ14683 1233 aaKnown RBP16.42■□□□□ 0.22
CPSF1-208ENST00000532560 NFKBIBQ15653 356 aa16.42■□□□□ 0.22
CPSF1-208ENST00000532560 PLPP4Q5VZY2 271 aa16.42■□□□□ 0.22
CPSF1-208ENST00000532560 SLFN12LQ6IEE8 588 aa16.42■□□□□ 0.22
CPSF1-208ENST00000532560 STXBP4Q6ZWJ1 553 aa16.42■□□□□ 0.22
CPSF1-208ENST00000532560 TMC7Q7Z402 723 aa16.42■□□□□ 0.22
CPSF1-208ENST00000532560 ADGRD2Q7Z7M1 963 aa16.42■□□□□ 0.22
CPSF1-208ENST00000532560 VPS52Q8N1B4 723 aa16.42■□□□□ 0.22
CPSF1-208ENST00000532560 MICAL1Q8TDZ2 1067 aa16.42■□□□□ 0.22
CPSF1-208ENST00000532560 PABPC5Q96DU9 382 aaKnown RBP16.42■□□□□ 0.22
CPSF1-208ENST00000532560 PAGE5Q96GU1 130 aa16.42■□□□□ 0.22
CPSF1-208ENST00000532560 ACCSQ96QU6 501 aa16.42■□□□□ 0.22
CPSF1-208ENST00000532560 CDCA3Q99618 268 aaPredicted RBP16.42■□□□□ 0.22
CPSF1-208ENST00000532560 MSTO1Q9BUK6 570 aa16.42■□□□□ 0.22
CPSF1-208ENST00000532560 GOLPH3LQ9H4A5 285 aa16.42■□□□□ 0.22
CPSF1-208ENST00000532560 TRIP11Q15643 1979 aa16.41■□□□□ 0.22
CPSF1-208ENST00000532560 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.41■□□□□ 0.22
CPSF1-208ENST00000532560 SMIM28A0A1B0GU29 152 aa16.41■□□□□ 0.22
CPSF1-208ENST00000532560 PVALEFA0A1B0GWK0 134 aa16.41■□□□□ 0.22
CPSF1-208ENST00000532560 DLL1O00548 723 aa16.41■□□□□ 0.22
CPSF1-208ENST00000532560 MEFVO15553 781 aaPredicted RBP16.41■□□□□ 0.22
CPSF1-208ENST00000532560 EFEMP2O95967 443 aa16.41■□□□□ 0.22
CPSF1-208ENST00000532560 MYL1P05976 194 aa16.41■□□□□ 0.22
CPSF1-208ENST00000532560 CTSAP10619 480 aa16.41■□□□□ 0.22
CPSF1-208ENST00000532560 CASP1P29466 404 aa16.41■□□□□ 0.22
CPSF1-208ENST00000532560 KCNA1Q09470 495 aa16.41■□□□□ 0.22
CPSF1-208ENST00000532560 CUL4BQ13620 913 aa16.41■□□□□ 0.22
CPSF1-208ENST00000532560 HSP90AA2PQ14568 343 aaPredicted RBP16.41■□□□□ 0.22
CPSF1-208ENST00000532560 BMS1Q14692 1282 aaKnown RBP16.41■□□□□ 0.22
CPSF1-208ENST00000532560 GLRA4Q5JXX5 417 aa16.41■□□□□ 0.22
CPSF1-208ENST00000532560 FAM26FQ5R3K3 315 aa16.41■□□□□ 0.22
CPSF1-208ENST00000532560 GRAMD1CQ8IYS0 662 aa16.41■□□□□ 0.22
CPSF1-208ENST00000532560 RNF168Q8IYW5 571 aaPredicted RBP16.41■□□□□ 0.22
CPSF1-208ENST00000532560 ATXN2LQ8WWM7 1075 aaKnown RBP16.41■□□□□ 0.22
CPSF1-208ENST00000532560 COLEC11Q9BWP8 271 aa16.41■□□□□ 0.22
CPSF1-208ENST00000532560 BLZF1Q9H2G9 400 aa16.41■□□□□ 0.22
CPSF1-208ENST00000532560 UBE2ZQ9H832 354 aaPredicted RBP16.41■□□□□ 0.22
CPSF1-208ENST00000532560 PLEKHA5Q9HAU0 1116 aa16.41■□□□□ 0.22
CPSF1-208ENST00000532560 SLC38A7Q9NVC3 462 aa16.41■□□□□ 0.22
CPSF1-208ENST00000532560 IRAK3Q9Y616 596 aa16.41■□□□□ 0.22
CPSF1-208ENST00000532560 PDCD11Q14690 1871 aaKnown RBP16.41■□□□□ 0.22
CPSF1-208ENST00000532560 CASTOR2A6NHX0 329 aa16.4■□□□□ 0.22
CPSF1-208ENST00000532560 TISP43B9A030 160 aa16.4■□□□□ 0.22
CPSF1-208ENST00000532560 ANKRD63C9JTQ0 380 aa16.4■□□□□ 0.22
CPSF1-208ENST00000532560 F8W810 466 aa16.4■□□□□ 0.22
CPSF1-208ENST00000532560 EIF3DO15371 548 aaKnown RBP eCLIP16.4■□□□□ 0.22
CPSF1-208ENST00000532560 SOD2P04179 222 aa16.4■□□□□ 0.22
CPSF1-208ENST00000532560 CXCL8P10145 99 aa16.4■□□□□ 0.22
CPSF1-208ENST00000532560 NRIP1P48552 1158 aa16.4■□□□□ 0.22
CPSF1-208ENST00000532560 DUSP6Q16828 381 aa16.4■□□□□ 0.22
CPSF1-208ENST00000532560 AAK1Q2M2I8 961 aa16.4■□□□□ 0.22
CPSF1-208ENST00000532560 CTC1Q2NKJ3 1217 aa16.4■□□□□ 0.22
CPSF1-208ENST00000532560 SLC10A6Q3KNW5 377 aa16.4■□□□□ 0.22
CPSF1-208ENST00000532560 SEZ6Q53EL9 994 aa16.4■□□□□ 0.22
CPSF1-208ENST00000532560 UROC1Q96N76 676 aa16.4■□□□□ 0.22
CPSF1-208ENST00000532560 ZMAT2Q96NC0 199 aaKnown RBP16.4■□□□□ 0.22
CPSF1-208ENST00000532560 HERC2P3Q9BVR0 1158 aa16.4■□□□□ 0.22
CPSF1-208ENST00000532560 TLE6Q9H808 572 aa16.4■□□□□ 0.22
CPSF1-208ENST00000532560 TMEM206Q9H813 350 aa16.4■□□□□ 0.22
CPSF1-208ENST00000532560 CHMP5Q9NZZ3 219 aa16.4■□□□□ 0.22
CPSF1-208ENST00000532560 ADAM28Q9UKQ2 775 aa16.4■□□□□ 0.22
CPSF1-208ENST00000532560 UBE4BO95155 1302 aa16.4■□□□□ 0.22
CPSF1-208ENST00000532560 BRWD1Q9NSI6 2320 aa16.4■□□□□ 0.22
CPSF1-208ENST00000532560 TTC26A0AVF1 554 aa16.39■□□□□ 0.21
CPSF1-208ENST00000532560 C2orf71A6NGG8 1288 aa16.39■□□□□ 0.21
CPSF1-208ENST00000532560 HIDE1A8MVS5 230 aa16.39■□□□□ 0.21
CPSF1-208ENST00000532560 TMEM189-UBE2V1I3L0A0 370 aa16.39■□□□□ 0.21
CPSF1-208ENST00000532560 KIF4AO95239 1232 aa16.39■□□□□ 0.21
CPSF1-208ENST00000532560 ADRB2P07550 413 aa16.39■□□□□ 0.21
CPSF1-208ENST00000532560 ADSSP30520 456 aa16.39■□□□□ 0.21
CPSF1-208ENST00000532560 GTF2F1P35269 517 aaKnown RBP eCLIP16.39■□□□□ 0.21
CPSF1-208ENST00000532560 TNFSF9P41273 254 aa16.39■□□□□ 0.21
CPSF1-208ENST00000532560 MRPS5P82675 430 aaKnown RBP16.39■□□□□ 0.21
CPSF1-208ENST00000532560 PPP2R3AQ06190 1150 aa16.39■□□□□ 0.21
CPSF1-208ENST00000532560 POSTNQ15063 836 aa16.39■□□□□ 0.21
CPSF1-208ENST00000532560 PTPN14Q15678 1187 aa16.39■□□□□ 0.21
CPSF1-208ENST00000532560 ZBTB41Q5SVQ8 909 aa16.39■□□□□ 0.21
CPSF1-208ENST00000532560 FUT10Q6P4F1 479 aa16.39■□□□□ 0.21
CPSF1-208ENST00000532560 KRBA2Q6ZNG9 492 aa16.39■□□□□ 0.21
CPSF1-208ENST00000532560 EPM2AIP1Q7L775 607 aaPredicted RBP16.39■□□□□ 0.21
CPSF1-208ENST00000532560 SYCP3Q8IZU3 236 aa16.39■□□□□ 0.21
CPSF1-208ENST00000532560 EFHBQ8N7U6 833 aa16.39■□□□□ 0.21
CPSF1-208ENST00000532560 MRPL43Q8N983 215 aaKnown RBP16.39■□□□□ 0.21
CPSF1-208ENST00000532560 GLIS3Q8NEA6 775 aa16.39■□□□□ 0.21
CPSF1-208ENST00000532560 HPS3Q969F9 1004 aa16.39■□□□□ 0.21
CPSF1-208ENST00000532560 PAAF1Q9BRP4 392 aa16.39■□□□□ 0.21
CPSF1-208ENST00000532560 IKZF4Q9H2S9 585 aa16.39■□□□□ 0.21
CPSF1-208ENST00000532560 CLDND1Q9NY35 253 aa16.39■□□□□ 0.21
CPSF1-208ENST00000532560 CACNG4Q9UBN1 327 aa16.39■□□□□ 0.21
CPSF1-208ENST00000532560 CPSF3Q9UKF6 684 aaKnown RBP16.39■□□□□ 0.21
CPSF1-208ENST00000532560 AGO2Q9UKV8 859 aaKnown RBP16.39■□□□□ 0.21
CPSF1-208ENST00000532560 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.39■□□□□ 0.21
CPSF1-208ENST00000532560 SF3B1O75533 1304 aaKnown RBP eCLIP16.39■□□□□ 0.21
CPSF1-208ENST00000532560 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.38■□□□□ 0.21
CPSF1-208ENST00000532560 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms