RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 NXPE3Q969Y0 559 aa16.2■□□□□ 0.18
VPS28-215ENST00000531924 PHOX2BQ99453 314 aa16.2■□□□□ 0.18
VPS28-215ENST00000531924 CCDC94Q9BW85 323 aaPredicted RBP16.2■□□□□ 0.18
VPS28-215ENST00000531924 TOPORSQ9NS56 1045 aaPredicted RBP16.2■□□□□ 0.18
VPS28-215ENST00000531924 DUSP12Q9UNI6 340 aa16.2■□□□□ 0.18
VPS28-215ENST00000531924 E9PMD0 336 aa16.19■□□□□ 0.18
VPS28-215ENST00000531924 H3BQV1 296 aa16.19■□□□□ 0.18
VPS28-215ENST00000531924 TRAPPC3O43617 180 aa16.19■□□□□ 0.18
VPS28-215ENST00000531924 ZMYND10O75800 440 aa16.19■□□□□ 0.18
VPS28-215ENST00000531924 B3GAT3O94766 335 aa16.19■□□□□ 0.18
VPS28-215ENST00000531924 TOB1P50616 345 aaPredicted RBP16.19■□□□□ 0.18
VPS28-215ENST00000531924 GLRA4Q5JXX5 417 aa16.19■□□□□ 0.18
VPS28-215ENST00000531924 NT5DC1Q5TFE4 455 aa16.19■□□□□ 0.18
VPS28-215ENST00000531924 LILRA6Q6PI73 481 aa16.19■□□□□ 0.18
VPS28-215ENST00000531924 DCLRE1AQ6PJP8 1040 aa16.19■□□□□ 0.18
VPS28-215ENST00000531924 SIX5Q8N196 739 aa16.19■□□□□ 0.18
VPS28-215ENST00000531924 IGSF22Q8N9C0 903 aa16.19■□□□□ 0.18
VPS28-215ENST00000531924 PIK3R5Q8WYR1 880 aa16.19■□□□□ 0.18
VPS28-215ENST00000531924 ZNF707Q96C28 371 aaPredicted RBP16.19■□□□□ 0.18
VPS28-215ENST00000531924 UROC1Q96N76 676 aa16.19■□□□□ 0.18
VPS28-215ENST00000531924 MRPL4Q9BYD3 311 aaKnown RBP16.19■□□□□ 0.18
VPS28-215ENST00000531924 UPF2Q9HAU5 1272 aaKnown RBP16.19■□□□□ 0.18
VPS28-215ENST00000531924 KMT5AQ9NQR1 393 aa16.19■□□□□ 0.18
VPS28-215ENST00000531924 EPS15L1Q9UBC2 864 aa16.19■□□□□ 0.18
VPS28-215ENST00000531924 POLIQ9UNA4 740 aa16.19■□□□□ 0.18
VPS28-215ENST00000531924 TNFSF13BQ9Y275 285 aa16.19■□□□□ 0.18
VPS28-215ENST00000531924 RBM19Q9Y4C8 960 aaKnown RBP16.19■□□□□ 0.18
VPS28-215ENST00000531924 PP2D1A8MPX8 630 aa16.18■□□□□ 0.18
VPS28-215ENST00000531924 HIP1RO75146 1068 aa16.18■□□□□ 0.18
VPS28-215ENST00000531924 XYLBO75191 536 aa16.18■□□□□ 0.18
VPS28-215ENST00000531924 HNRNPA1P09651 372 aaKnown RBP eCLIP16.18■□□□□ 0.18
VPS28-215ENST00000531924 FSHRP23945 695 aa16.18■□□□□ 0.18
VPS28-215ENST00000531924 PRPHP41219 470 aa16.18■□□□□ 0.18
VPS28-215ENST00000531924 NPTX2P47972 431 aa16.18■□□□□ 0.18
VPS28-215ENST00000531924 OSTNP61366 133 aa16.18■□□□□ 0.18
VPS28-215ENST00000531924 ZNF568Q3ZCX4 644 aa16.18■□□□□ 0.18
VPS28-215ENST00000531924 RILPL1Q5EBL4 403 aa16.18■□□□□ 0.18
VPS28-215ENST00000531924 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.18■□□□□ 0.18
VPS28-215ENST00000531924 LNX1Q8TBB1 728 aaPredicted RBP16.18■□□□□ 0.18
VPS28-215ENST00000531924 CDK5RAP3Q96JB5 506 aa16.18■□□□□ 0.18
VPS28-215ENST00000531924 MYADMQ96S97 322 aa16.18■□□□□ 0.18
VPS28-215ENST00000531924 KIF2CQ99661 725 aa16.18■□□□□ 0.18
VPS28-215ENST00000531924 CLSTN3Q9BQT9 956 aa16.18■□□□□ 0.18
VPS28-215ENST00000531924 KCNG1Q9UIX4 513 aa16.18■□□□□ 0.18
VPS28-215ENST00000531924 TDRD15B5MCY1 1934 aaKnown RBP16.17■□□□□ 0.18
VPS28-215ENST00000531924 GFRA3O60609 400 aa16.17■□□□□ 0.18
VPS28-215ENST00000531924 N4BP1O75113 896 aaKnown RBP16.17■□□□□ 0.18
VPS28-215ENST00000531924 EDN1P05305 212 aa16.17■□□□□ 0.18
VPS28-215ENST00000531924 C8AP07357 584 aa16.17■□□□□ 0.18
VPS28-215ENST00000531924 CFHP08603 1231 aa16.17■□□□□ 0.18
VPS28-215ENST00000531924 LAMP2P13473 410 aa16.17■□□□□ 0.18
VPS28-215ENST00000531924 CDC25AP30304 524 aa16.17■□□□□ 0.18
VPS28-215ENST00000531924 CLCNKBP51801 687 aa16.17■□□□□ 0.18
VPS28-215ENST00000531924 STRN3Q13033 797 aa16.17■□□□□ 0.18
VPS28-215ENST00000531924 RSAD2Q8WXG1 361 aa16.17■□□□□ 0.18
VPS28-215ENST00000531924 RTP3Q9BQQ7 232 aa16.17■□□□□ 0.18
VPS28-215ENST00000531924 TIPINQ9BVW5 301 aa16.17■□□□□ 0.18
VPS28-215ENST00000531924 CXCL16Q9H2A7 254 aa16.17■□□□□ 0.18
VPS28-215ENST00000531924 TMEM134Q9H6X4 195 aa16.17■□□□□ 0.18
VPS28-215ENST00000531924 SLC38A7Q9NVC3 462 aa16.17■□□□□ 0.18
VPS28-215ENST00000531924 FBXW11Q9UKB1 542 aa16.17■□□□□ 0.18
VPS28-215ENST00000531924 ZFP37Q9Y6Q3 630 aaPredicted RBP16.17■□□□□ 0.18
VPS28-215ENST00000531924 NARSO43776 548 aaKnown RBP16.16■□□□□ 0.18
VPS28-215ENST00000531924 HARSP12081 509 aaKnown RBP16.16■□□□□ 0.18
VPS28-215ENST00000531924 OR1D2P34982 312 aa16.16■□□□□ 0.18
VPS28-215ENST00000531924 GRM5P41594 1212 aa16.16■□□□□ 0.18
VPS28-215ENST00000531924 SMTNP53814 917 aa16.16■□□□□ 0.18
VPS28-215ENST00000531924 C8orf34Q49A92 452 aa16.16■□□□□ 0.18
VPS28-215ENST00000531924 GRASPQ7Z6J2 395 aaPredicted RBP16.16■□□□□ 0.18
VPS28-215ENST00000531924 SLC44A3Q8N4M1 653 aa16.16■□□□□ 0.18
VPS28-215ENST00000531924 DDX27Q96GQ7 796 aaKnown RBP16.16■□□□□ 0.18
VPS28-215ENST00000531924 ACAP3Q96P50 834 aa16.16■□□□□ 0.18
VPS28-215ENST00000531924 PPP1R10Q96QC0 940 aaKnown RBP16.16■□□□□ 0.18
VPS28-215ENST00000531924 ACO2Q99798 780 aaKnown RBP16.16■□□□□ 0.18
VPS28-215ENST00000531924 RUSC1Q9BVN2 902 aa16.16■□□□□ 0.18
VPS28-215ENST00000531924 TARS2Q9BW92 718 aaKnown RBP16.16■□□□□ 0.18
VPS28-215ENST00000531924 C17orf75Q9HAS0 396 aa16.16■□□□□ 0.18
VPS28-215ENST00000531924 WNT16Q9UBV4 365 aa16.16■□□□□ 0.18
VPS28-215ENST00000531924 SMIM28A0A1B0GU29 152 aa16.15■□□□□ 0.18
VPS28-215ENST00000531924 TMEM189-UBE2V1I3L0A0 370 aa16.15■□□□□ 0.18
VPS28-215ENST00000531924 SLC16A4O15374 487 aa16.15■□□□□ 0.18
VPS28-215ENST00000531924 CCL16O15467 120 aa16.15■□□□□ 0.18
VPS28-215ENST00000531924 MCF2P10911 925 aa16.15■□□□□ 0.18
VPS28-215ENST00000531924 SRFP11831 508 aa16.15■□□□□ 0.18
VPS28-215ENST00000531924 AOC1P19801 751 aa16.15■□□□□ 0.18
VPS28-215ENST00000531924 MATR3P43243 847 aaKnown RBP eCLIP16.15■□□□□ 0.18
VPS28-215ENST00000531924 RAB33AQ14088 237 aa16.15■□□□□ 0.18
VPS28-215ENST00000531924 NAB2Q15742 525 aa16.15■□□□□ 0.18
VPS28-215ENST00000531924 IL17AQ16552 155 aa16.15■□□□□ 0.18
VPS28-215ENST00000531924 UPP1Q16831 310 aa16.15■□□□□ 0.18
VPS28-215ENST00000531924 AXDND1Q5T1B0 1012 aaPredicted RBP16.15■□□□□ 0.18
VPS28-215ENST00000531924 RINT1Q6NUQ1 792 aa16.15■□□□□ 0.18
VPS28-215ENST00000531924 ANKS3Q6ZW76 656 aa16.15■□□□□ 0.18
VPS28-215ENST00000531924 SLC7A14Q8TBB6 771 aa16.15■□□□□ 0.18
VPS28-215ENST00000531924 CDT1Q9H211 546 aa16.15■□□□□ 0.18
VPS28-215ENST00000531924 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.15■□□□□ 0.18
VPS28-215ENST00000531924 CA14Q9ULX7 337 aa16.15■□□□□ 0.18
VPS28-215ENST00000531924 NUB1Q9Y5A7 615 aa16.15■□□□□ 0.18
VPS28-215ENST00000531924 MYO10Q9HD67 2058 aa16.15■□□□□ 0.18
VPS28-215ENST00000531924 KMT2EQ8IZD2 1858 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms