RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 MRPL4Q9BYD3 311 aaKnown RBP11.7□□□□□ -0.54
CD44-227ENST00000528086 PANK2Q9BZ23 570 aa11.7□□□□□ -0.54
CD44-227ENST00000528086 KCND2Q9NZV8 630 aa11.7□□□□□ -0.54
CD44-227ENST00000528086 PRKAG3Q9UGI9 489 aa11.7□□□□□ -0.54
CD44-227ENST00000528086 RAPGEFL1Q9UHV5 662 aa11.7□□□□□ -0.54
CD44-227ENST00000528086 ADAM28Q9UKQ2 775 aa11.7□□□□□ -0.54
CD44-227ENST00000528086 RBM19Q9Y4C8 960 aaKnown RBP11.7□□□□□ -0.54
CD44-227ENST00000528086 ANKRD63C9JTQ0 380 aa11.69□□□□□ -0.54
CD44-227ENST00000528086 C2CD2LO14523 706 aa11.69□□□□□ -0.54
CD44-227ENST00000528086 PPP1R37O75864 691 aa11.69□□□□□ -0.54
CD44-227ENST00000528086 PAPLNO95428 1278 aa11.69□□□□□ -0.54
CD44-227ENST00000528086 THP07101 528 aa11.69□□□□□ -0.54
CD44-227ENST00000528086 RPL17P18621 184 aaKnown RBP11.69□□□□□ -0.54
CD44-227ENST00000528086 TNFSF9P41273 254 aa11.69□□□□□ -0.54
CD44-227ENST00000528086 MCL1Q07820 350 aa11.69□□□□□ -0.54
CD44-227ENST00000528086 KCNA1Q09470 495 aa11.69□□□□□ -0.54
CD44-227ENST00000528086 HSP90AA2PQ14568 343 aaPredicted RBP11.69□□□□□ -0.54
CD44-227ENST00000528086 E2F4Q16254 413 aa11.69□□□□□ -0.54
CD44-227ENST00000528086 ZNF568Q3ZCX4 644 aa11.69□□□□□ -0.54
CD44-227ENST00000528086 ZC2HC1CQ53FD0 456 aaPredicted RBP11.69□□□□□ -0.54
CD44-227ENST00000528086 LILRA6Q6PI73 481 aa11.69□□□□□ -0.54
CD44-227ENST00000528086 SHC4Q6S5L8 630 aa11.69□□□□□ -0.54
CD44-227ENST00000528086 PRSS55Q6UWB4 352 aaPredicted RBP11.69□□□□□ -0.54
CD44-227ENST00000528086 MPZL3Q6UWV2 235 aa11.69□□□□□ -0.54
CD44-227ENST00000528086 C18orf25Q96B23 403 aaPredicted RBP11.69□□□□□ -0.54
CD44-227ENST00000528086 CALML4Q96GE6 196 aa11.69□□□□□ -0.54
CD44-227ENST00000528086 CDK5RAP3Q96JB5 506 aa11.69□□□□□ -0.54
CD44-227ENST00000528086 ZSCAN16Q9H4T2 348 aaPredicted RBP11.69□□□□□ -0.54
CD44-227ENST00000528086 POMKQ9H5K3 350 aa11.69□□□□□ -0.54
CD44-227ENST00000528086 ODF2LQ9ULJ1 636 aa11.69□□□□□ -0.54
CD44-227ENST00000528086 SCN1AP35498 2009 aa11.69□□□□□ -0.54
CD44-227ENST00000528086 F13A1P00488 732 aa11.68□□□□□ -0.54
CD44-227ENST00000528086 PIGRP01833 764 aa11.68□□□□□ -0.54
CD44-227ENST00000528086 ZSCAN22P10073 491 aaPredicted RBP11.68□□□□□ -0.54
CD44-227ENST00000528086 MYBP10242 640 aa11.68□□□□□ -0.54
CD44-227ENST00000528086 MCF2P10911 925 aa11.68□□□□□ -0.54
CD44-227ENST00000528086 KCNE1P15382 129 aa11.68□□□□□ -0.54
CD44-227ENST00000528086 CLCNKBP51801 687 aa11.68□□□□□ -0.54
CD44-227ENST00000528086 CASP5P51878 434 aa11.68□□□□□ -0.54
CD44-227ENST00000528086 GTF2BQ00403 316 aa11.68□□□□□ -0.54
CD44-227ENST00000528086 ZBTB6Q15916 424 aa11.68□□□□□ -0.54
CD44-227ENST00000528086 UPP1Q16831 310 aa11.68□□□□□ -0.54
CD44-227ENST00000528086 FOXD4L6Q3SYB3 417 aaPredicted RBP11.68□□□□□ -0.54
CD44-227ENST00000528086 SCARA3Q6AZY7 606 aa11.68□□□□□ -0.54
CD44-227ENST00000528086 FOXD4L3Q6VB84 417 aaPredicted RBP11.68□□□□□ -0.54
CD44-227ENST00000528086 ZPBP2Q6X784 338 aa11.68□□□□□ -0.54
CD44-227ENST00000528086 RNF135Q8IUD6 432 aa11.68□□□□□ -0.54
CD44-227ENST00000528086 KRI1Q8N9T8 703 aaKnown RBP11.68□□□□□ -0.54
CD44-227ENST00000528086 GLIS3Q8NEA6 775 aa11.68□□□□□ -0.54
CD44-227ENST00000528086 ZSWIM2Q8NEG5 633 aa11.68□□□□□ -0.54
CD44-227ENST00000528086 LNX1Q8TBB1 728 aaPredicted RBP11.68□□□□□ -0.54
CD44-227ENST00000528086 CASP10Q92851 521 aa11.68□□□□□ -0.54
CD44-227ENST00000528086 CLSTN3Q9BQT9 956 aa11.68□□□□□ -0.54
CD44-227ENST00000528086 ADPGKQ9BRR6 497 aa11.68□□□□□ -0.54
CD44-227ENST00000528086 COLEC11Q9BWP8 271 aa11.68□□□□□ -0.54
CD44-227ENST00000528086 ADAM7Q9H2U9 754 aa11.68□□□□□ -0.54
CD44-227ENST00000528086 CNTN3Q9P232 1028 aa11.68□□□□□ -0.54
CD44-227ENST00000528086 TBX20Q9UMR3 447 aa11.68□□□□□ -0.54
CD44-227ENST00000528086 WDFY4Q6ZS81 3184 aa11.68□□□□□ -0.54
CD44-227ENST00000528086 TTC26A0AVF1 554 aa11.67□□□□□ -0.54
CD44-227ENST00000528086 FRMD3A2A2Y4 597 aa11.67□□□□□ -0.54
CD44-227ENST00000528086 CARNS1A5YM72 827 aa11.67□□□□□ -0.54
CD44-227ENST00000528086 FAM86C2PA6NEL3 165 aa11.67□□□□□ -0.54
CD44-227ENST00000528086 TMEM189-UBE2V1I3L0A0 370 aa11.67□□□□□ -0.54
CD44-227ENST00000528086 I3L4J1 428 aa11.67□□□□□ -0.54
CD44-227ENST00000528086 TRAK2O60296 914 aa11.67□□□□□ -0.54
CD44-227ENST00000528086 TOM1L1O75674 476 aa11.67□□□□□ -0.54
CD44-227ENST00000528086 ADRB2P07550 413 aa11.67□□□□□ -0.54
CD44-227ENST00000528086 SPATA31D3P0C874 917 aa11.67□□□□□ -0.54
CD44-227ENST00000528086 HARSP12081 509 aaKnown RBP11.67□□□□□ -0.54
CD44-227ENST00000528086 HOXB8P17481 243 aaPredicted RBP11.67□□□□□ -0.54
CD44-227ENST00000528086 ADSSP30520 456 aa11.67□□□□□ -0.54
CD44-227ENST00000528086 BRCC3P46736 316 aa11.67□□□□□ -0.54
CD44-227ENST00000528086 GLUD2P49448 558 aa11.67□□□□□ -0.54
CD44-227ENST00000528086 WNT7BP56706 349 aa11.67□□□□□ -0.54
CD44-227ENST00000528086 SPAG1Q07617 926 aa11.67□□□□□ -0.54
CD44-227ENST00000528086 NOLC1Q14978 699 aaKnown RBP eCLIP11.67□□□□□ -0.54
CD44-227ENST00000528086 RARS2Q5T160 578 aaKnown RBP11.67□□□□□ -0.54
CD44-227ENST00000528086 SPATA31D4Q6ZUB0 917 aa11.67□□□□□ -0.54
CD44-227ENST00000528086 DYMQ7RTS9 669 aa11.67□□□□□ -0.54
CD44-227ENST00000528086 SFR1Q86XK3 245 aa11.67□□□□□ -0.54
CD44-227ENST00000528086 HSCBQ8IWL3 235 aa11.67□□□□□ -0.54
CD44-227ENST00000528086 HACE1Q8IYU2 909 aa11.67□□□□□ -0.54
CD44-227ENST00000528086 MYCT1Q8N699 235 aa11.67□□□□□ -0.54
CD44-227ENST00000528086 DDX12PQ92771 950 aa11.67□□□□□ -0.54
CD44-227ENST00000528086 STAMQ92783 540 aa11.67□□□□□ -0.54
CD44-227ENST00000528086 FBXL18Q96ME1 805 aa11.67□□□□□ -0.54
CD44-227ENST00000528086 PHF7Q9BWX1 381 aaPredicted RBP11.67□□□□□ -0.54
CD44-227ENST00000528086 ST6GALNAC4Q9H4F1 302 aa11.67□□□□□ -0.54
CD44-227ENST00000528086 PARVGQ9HBI0 331 aa11.67□□□□□ -0.54
CD44-227ENST00000528086 MRPL17Q9NRX2 175 aaKnown RBP11.67□□□□□ -0.54
CD44-227ENST00000528086 STK17AQ9UEE5 414 aa11.67□□□□□ -0.54
CD44-227ENST00000528086 MUTYHQ9UIF7 546 aa11.67□□□□□ -0.54
CD44-227ENST00000528086 ZNF318Q5VUA4 2279 aa11.67□□□□□ -0.54
CD44-227ENST00000528086 A0A0B4J269 797 aa11.66□□□□□ -0.54
CD44-227ENST00000528086 SPTLC2O15270 562 aa11.66□□□□□ -0.54
CD44-227ENST00000528086 N4BP1O75113 896 aaKnown RBP11.66□□□□□ -0.54
CD44-227ENST00000528086 PPP6R2O75170 966 aa11.66□□□□□ -0.54
CD44-227ENST00000528086 TADA2AO75478 443 aa11.66□□□□□ -0.54
CD44-227ENST00000528086 RFPL2O75678 378 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms