RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-216	ENST00000525293	EGFLAM	Q63HQ2	1017 aa		3.23	□□□□□ -1.89
CD44-216	ENST00000525293	METRNL	Q641Q3	311 aa		3.23	□□□□□ -1.89
CD44-216	ENST00000525293	MED25	Q71SY5	747 aa		3.23	□□□□□ -1.89
CD44-216	ENST00000525293	ZNF572	Q7Z3I7	529 aa	Predicted RBP	3.23	□□□□□ -1.89
CD44-216	ENST00000525293	PLXDC1	Q8IUK5	500 aa		3.23	□□□□□ -1.89
CD44-216	ENST00000525293	GPR150	Q8NGU9	434 aa		3.23	□□□□□ -1.89
CD44-216	ENST00000525293	ZG16B	Q96DA0	208 aa		3.23	□□□□□ -1.89
CD44-216	ENST00000525293	SLC2A13	Q96QE2	648 aa		3.23	□□□□□ -1.89
CD44-216	ENST00000525293	NEU1	Q99519	415 aa		3.23	□□□□□ -1.89
CD44-216	ENST00000525293	ADI1	Q9BV57	179 aa		3.23	□□□□□ -1.89
CD44-216	ENST00000525293	WDR11	Q9BZH6	1224 aa		3.23	□□□□□ -1.89
CD44-216	ENST00000525293	CCM2L	Q9NUG4	571 aa	Predicted RBP	3.23	□□□□□ -1.89
CD44-216	ENST00000525293	MAP3K2	Q9Y2U5	619 aa		3.23	□□□□□ -1.89
CD44-216	ENST00000525293	PRKAB1	Q9Y478	270 aa		3.23	□□□□□ -1.89
CD44-216	ENST00000525293	ATRNL1	Q5VV63	1379 aa		3.23	□□□□□ -1.89
CD44-216	ENST00000525293	WASHC2A	Q641Q2	1341 aa		3.22	□□□□□ -1.89
CD44-216	ENST00000525293	PNPLA7	Q6ZV29	1317 aa		3.22	□□□□□ -1.89
CD44-216	ENST00000525293	TMEM200C	A6NKL6	621 aa		3.22	□□□□□ -1.89
CD44-216	ENST00000525293	B3GALT2	O43825	422 aa		3.22	□□□□□ -1.89
CD44-216	ENST00000525293	SPATA31D3	P0C874	917 aa		3.22	□□□□□ -1.89
CD44-216	ENST00000525293	RAP2A	P10114	183 aa		3.22	□□□□□ -1.89
CD44-216	ENST00000525293	PROZ	P22891	400 aa		3.22	□□□□□ -1.89
CD44-216	ENST00000525293	ZEB1	P37275	1124 aa	Predicted RBP	3.22	□□□□□ -1.89
CD44-216	ENST00000525293	MCAM	P43121	646 aa		3.22	□□□□□ -1.89
CD44-216	ENST00000525293	MTNR1B	P49286	362 aa		3.22	□□□□□ -1.89
CD44-216	ENST00000525293	SLC5A3	P53794	718 aa		3.22	□□□□□ -1.89
CD44-216	ENST00000525293	ERVK-21	P61565	698 aa		3.22	□□□□□ -1.89
CD44-216	ENST00000525293	SP140	Q13342	867 aa		3.22	□□□□□ -1.89
CD44-216	ENST00000525293	BEAN1	Q3B7T3	259 aa		3.22	□□□□□ -1.89
CD44-216	ENST00000525293	RRP12	Q5JTH9	1297 aa	Known RBP	3.22	□□□□□ -1.89
CD44-216	ENST00000525293	TSHZ3	Q63HK5	1081 aa		3.22	□□□□□ -1.89
CD44-216	ENST00000525293	SPATA31D4	Q6ZUB0	917 aa		3.22	□□□□□ -1.89
CD44-216	ENST00000525293	ARHGEF19	Q8IW93	802 aa		3.22	□□□□□ -1.89
CD44-216	ENST00000525293	CPEB3	Q8NE35	698 aa	Known RBP	3.22	□□□□□ -1.89
CD44-216	ENST00000525293	HOXB13	Q92826	284 aa	Predicted RBP	3.22	□□□□□ -1.89
CD44-216	ENST00000525293	MRI1	Q9BV20	369 aa		3.22	□□□□□ -1.89
CD44-216	ENST00000525293	SENP6	Q9GZR1	1112 aa	Predicted RBP	3.22	□□□□□ -1.89
CD44-216	ENST00000525293	SERHL2	Q9H4I8	314 aa		3.22	□□□□□ -1.89
CD44-216	ENST00000525293	CYP4F11	Q9HBI6	524 aa		3.22	□□□□□ -1.89
CD44-216	ENST00000525293	LANCL2	Q9NS86	450 aa		3.22	□□□□□ -1.89
CD44-216	ENST00000525293	DKK2	Q9UBU2	259 aa		3.22	□□□□□ -1.89
CD44-216	ENST00000525293	DNM3	Q9UQ16	869 aa		3.22	□□□□□ -1.89
CD44-216	ENST00000525293	ATP11B	Q9Y2G3	1177 aa		3.22	□□□□□ -1.89
CD44-216	ENST00000525293	PHLDB1	Q86UU1	1377 aa		3.22	□□□□□ -1.89
CD44-216	ENST00000525293		A0A0U1RQG5	324 aa	Predicted RBP	3.21	□□□□□ -1.9
CD44-216	ENST00000525293	GRID2IP	A4D2P6	1211 aa		3.21	□□□□□ -1.9
CD44-216	ENST00000525293	UNC119B	A6NIH7	251 aa		3.21	□□□□□ -1.9
CD44-216	ENST00000525293	RHOBTB3	O94955	611 aa		3.21	□□□□□ -1.9
CD44-216	ENST00000525293	POMC	P01189	267 aa		3.21	□□□□□ -1.9
CD44-216	ENST00000525293	HLA-DOA	P06340	250 aa		3.21	□□□□□ -1.9
CD44-216	ENST00000525293	IL2RB	P14784	551 aa		3.21	□□□□□ -1.9
CD44-216	ENST00000525293	ATP5J	P18859	108 aa		3.21	□□□□□ -1.9
CD44-216	ENST00000525293	FPR1	P21462	350 aa		3.21	□□□□□ -1.9
CD44-216	ENST00000525293	BMPR1A	P36894	532 aa		3.21	□□□□□ -1.9
CD44-216	ENST00000525293	ALDH1A3	P47895	512 aa		3.21	□□□□□ -1.9
CD44-216	ENST00000525293	GUCY1B3	Q02153	619 aa		3.21	□□□□□ -1.9
CD44-216	ENST00000525293	COL10A1	Q03692	680 aa		3.21	□□□□□ -1.9
CD44-216	ENST00000525293	REST	Q13127	1097 aa		3.21	□□□□□ -1.9
CD44-216	ENST00000525293	SEPT2	Q15019	361 aa		3.21	□□□□□ -1.9
CD44-216	ENST00000525293	CLUL1	Q15846	466 aa		3.21	□□□□□ -1.9
CD44-216	ENST00000525293	GJC2	Q5T442	439 aa	Predicted RBP	3.21	□□□□□ -1.9
CD44-216	ENST00000525293	HECTD2	Q5U5R9	776 aa		3.21	□□□□□ -1.9
CD44-216	ENST00000525293	AGAP9	Q5VTM2	703 aa		3.21	□□□□□ -1.9
CD44-216	ENST00000525293	TMED8	Q6PL24	325 aa	Predicted RBP	3.21	□□□□□ -1.9
CD44-216	ENST00000525293		Q6YL49	198 aa		3.21	□□□□□ -1.9
CD44-216	ENST00000525293	DDX42	Q86XP3	938 aa	Known RBP eCLIP	3.21	□□□□□ -1.9
CD44-216	ENST00000525293	DNAJC10	Q8IXB1	793 aa		3.21	□□□□□ -1.9
CD44-216	ENST00000525293	CMTR2	Q8IYT2	770 aa	Known RBP	3.21	□□□□□ -1.9
CD44-216	ENST00000525293	LCORL	Q8N3X6	602 aa		3.21	□□□□□ -1.9
CD44-216	ENST00000525293	PPM1N	Q8N819	430 aa		3.21	□□□□□ -1.9
CD44-216	ENST00000525293	BEND2	Q8NDZ0	799 aa		3.21	□□□□□ -1.9
CD44-216	ENST00000525293	OR2I1P	Q8NGU4	316 aa		3.21	□□□□□ -1.9
CD44-216	ENST00000525293	CCHCR1	Q8TD31	782 aa		3.21	□□□□□ -1.9
CD44-216	ENST00000525293	MYOC	Q99972	504 aa		3.21	□□□□□ -1.9
CD44-216	ENST00000525293	SLC5A4	Q9NY91	659 aa		3.21	□□□□□ -1.9
CD44-216	ENST00000525293	MOCS1	Q9NZB8	636 aa		3.21	□□□□□ -1.9
CD44-216	ENST00000525293	BCCIP	Q9P287	314 aa	Known RBP eCLIP	3.21	□□□□□ -1.9
CD44-216	ENST00000525293	MCM8	Q9UJA3	840 aa		3.21	□□□□□ -1.9
CD44-216	ENST00000525293	AJAP1	Q9UKB5	411 aa	Predicted RBP	3.21	□□□□□ -1.9
CD44-216	ENST00000525293	PACSIN3	Q9UKS6	424 aa		3.21	□□□□□ -1.9
CD44-216	ENST00000525293	SIK3	Q9Y2K2	1263 aa		3.21	□□□□□ -1.9
CD44-216	ENST00000525293	GPR45	Q9Y5Y3	372 aa		3.21	□□□□□ -1.9
CD44-216	ENST00000525293	ACTL7A	Q9Y615	435 aa		3.21	□□□□□ -1.9
CD44-216	ENST00000525293	FPGT-TNNI3K	V9GXZ4	949 aa		3.21	□□□□□ -1.9
CD44-216	ENST00000525293	ENDOD1	O94919	500 aa		3.2	□□□□□ -1.9
CD44-216	ENST00000525293	AGXT	P21549	392 aa		3.2	□□□□□ -1.9
CD44-216	ENST00000525293	BMP5	P22003	454 aa		3.2	□□□□□ -1.9
CD44-216	ENST00000525293	DDX6	P26196	483 aa	Known RBP eCLIP	3.2	□□□□□ -1.9
CD44-216	ENST00000525293	GUCY1A2	P33402	732 aa		3.2	□□□□□ -1.9
CD44-216	ENST00000525293	SLC6A9	P48067	706 aa		3.2	□□□□□ -1.9
CD44-216	ENST00000525293	USP14	P54578	494 aa		3.2	□□□□□ -1.9
CD44-216	ENST00000525293	NANOS3	P60323	173 aa	Known RBP	3.2	□□□□□ -1.9
CD44-216	ENST00000525293	MGAT2	Q10469	447 aa		3.2	□□□□□ -1.9
CD44-216	ENST00000525293	KLF1	Q13351	362 aa	Predicted RBP	3.2	□□□□□ -1.9
CD44-216	ENST00000525293	TP53BP2	Q13625	1128 aa		3.2	□□□□□ -1.9
CD44-216	ENST00000525293	UBXN2B	Q14CS0	331 aa		3.2	□□□□□ -1.9
CD44-216	ENST00000525293	ZNF529	Q6P280	563 aa		3.2	□□□□□ -1.9
CD44-216	ENST00000525293	PGM2L1	Q6PCE3	622 aa		3.2	□□□□□ -1.9
CD44-216	ENST00000525293	UBE3B	Q7Z3V4	1068 aa		3.2	□□□□□ -1.9
CD44-216	ENST00000525293	MAPKAPK5	Q8IW41	473 aa		3.2	□□□□□ -1.9

Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms