RNA–Protein interactions for RNA: ENST00000521713.1

USP42-207, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 5

Gene USP42, Length 5,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-207ENST00000521713 SGSM1Q2NKQ1 1148 aa17.15■□□□□ 0.34
USP42-207ENST00000521713 GRAMD1AQ96CP6 724 aa17.15■□□□□ 0.34
USP42-207ENST00000521713 SH2D3AQ9BRG2 576 aa17.15■□□□□ 0.34
USP42-207ENST00000521713 TADA2AO75478 443 aa17.15■□□□□ 0.34
USP42-207ENST00000521713 ITGA4P13612 1032 aa17.15■□□□□ 0.34
USP42-207ENST00000521713 PMLP29590 882 aa17.15■□□□□ 0.34
USP42-207ENST00000521713 TRIML2Q8N7C3 387 aa17.15■□□□□ 0.34
USP42-207ENST00000521713 FAM163AQ96GL9 167 aaPredicted RBP17.15■□□□□ 0.34
USP42-207ENST00000521713 VPS39Q96JC1 886 aa17.15■□□□□ 0.34
USP42-207ENST00000521713 OSBPL9Q96SU4 736 aa17.15■□□□□ 0.34
USP42-207ENST00000521713 MYMKA6NI61 221 aa17.14■□□□□ 0.34
USP42-207ENST00000521713 RPLP2P05387 115 aaKnown RBP17.14■□□□□ 0.34
USP42-207ENST00000521713 ATP6V1E2Q96A05 226 aa17.14■□□□□ 0.34
USP42-207ENST00000521713 CYP26B1Q9NR63 512 aa17.14■□□□□ 0.34
USP42-207ENST00000521713 HPS5Q9UPZ3 1129 aa17.14■□□□□ 0.34
USP42-207ENST00000521713 TTI1O43156 1089 aa17.14■□□□□ 0.33
USP42-207ENST00000521713 PALMO75781 387 aa17.14■□□□□ 0.33
USP42-207ENST00000521713 MUTP22033 750 aa17.14■□□□□ 0.33
USP42-207ENST00000521713 APPL2Q8NEU8 664 aa17.14■□□□□ 0.33
USP42-207ENST00000521713 ATP6V1G3Q96LB4 118 aa17.14■□□□□ 0.33
USP42-207ENST00000521713 NPHP3-ACAD11A0A0J9YXS1 232 aa17.14■□□□□ 0.33
USP42-207ENST00000521713 EXOC1LA0A1B0GW35 172 aa17.14■□□□□ 0.33
USP42-207ENST00000521713 TTC26A0AVF1 554 aa17.14■□□□□ 0.33
USP42-207ENST00000521713 CTIFO43310 598 aaKnown RBP17.14■□□□□ 0.33
USP42-207ENST00000521713 STX1BP61266 288 aa17.14■□□□□ 0.33
USP42-207ENST00000521713 DPYDQ12882 1025 aa17.14■□□□□ 0.33
USP42-207ENST00000521713 FAM102AQ5T9C2 384 aaPredicted RBP17.14■□□□□ 0.33
USP42-207ENST00000521713 ATF7IP2Q5U623 682 aa17.14■□□□□ 0.33
USP42-207ENST00000521713 PLA2G4FQ68DD2 849 aa17.14■□□□□ 0.33
USP42-207ENST00000521713 SMYD2Q9NRG4 433 aa17.14■□□□□ 0.33
USP42-207ENST00000521713 EHD2Q9NZN4 543 aa17.14■□□□□ 0.33
USP42-207ENST00000521713 HNRNPCL1O60812 293 aaKnown RBP17.14■□□□□ 0.33
USP42-207ENST00000521713 ACTR2P61160 394 aa17.14■□□□□ 0.33
USP42-207ENST00000521713 CDK17Q00537 523 aa17.14■□□□□ 0.33
USP42-207ENST00000521713 IQCB1Q15051 598 aa17.14■□□□□ 0.33
USP42-207ENST00000521713 SNRNP35Q16560 246 aaKnown RBP17.14■□□□□ 0.33
USP42-207ENST00000521713 JADE1Q6IE81 842 aa17.14■□□□□ 0.33
USP42-207ENST00000521713 MKNK1Q9BUB5 465 aa17.14■□□□□ 0.33
USP42-207ENST00000521713 NUP85Q9BW27 656 aa17.14■□□□□ 0.33
USP42-207ENST00000521713 PAMP19021 973 aa17.13■□□□□ 0.33
USP42-207ENST00000521713 CYP11B2P19099 503 aa17.13■□□□□ 0.33
USP42-207ENST00000521713 VCAM1P19320 739 aa17.13■□□□□ 0.33
USP42-207ENST00000521713 ACOT2P49753 483 aa17.13■□□□□ 0.33
USP42-207ENST00000521713 CAV1Q03135 178 aa17.13■□□□□ 0.33
USP42-207ENST00000521713 C3orf67Q6ZVT6 689 aa17.13■□□□□ 0.33
USP42-207ENST00000521713 PCGF5Q86SE9 256 aa17.13■□□□□ 0.33
USP42-207ENST00000521713 SNX9Q9Y5X1 595 aa17.13■□□□□ 0.33
USP42-207ENST00000521713 TCF7P36402 384 aaPredicted RBP17.13■□□□□ 0.33
USP42-207ENST00000521713 SPATA2LQ8IUW3 424 aaPredicted RBP17.13■□□□□ 0.33
USP42-207ENST00000521713 PARD3BQ8TEW8 1205 aa17.13■□□□□ 0.33
USP42-207ENST00000521713 PPWD1Q96BP3 646 aaKnown RBP17.13■□□□□ 0.33
USP42-207ENST00000521713 CCDC124Q96CT7 223 aaKnown RBP17.13■□□□□ 0.33
USP42-207ENST00000521713 IDI2Q9BXS1 227 aa17.13■□□□□ 0.33
USP42-207ENST00000521713 TRIM55Q9BYV6 548 aa17.13■□□□□ 0.33
USP42-207ENST00000521713 KIAA1683Q9H0B3 1180 aa17.13■□□□□ 0.33
USP42-207ENST00000521713 DDX56Q9NY93 547 aaKnown RBP17.13■□□□□ 0.33
USP42-207ENST00000521713 WDR35Q9P2L0 1181 aa17.13■□□□□ 0.33
USP42-207ENST00000521713 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.13■□□□□ 0.33
USP42-207ENST00000521713 PYROXD1Q8WU10 500 aa17.13■□□□□ 0.33
USP42-207ENST00000521713 DDX50Q9BQ39 737 aaKnown RBP17.13■□□□□ 0.33
USP42-207ENST00000521713 LIMA1Q9UHB6 759 aaKnown RBP17.13■□□□□ 0.33
USP42-207ENST00000521713 SUFUQ9UMX1 484 aa17.13■□□□□ 0.33
USP42-207ENST00000521713 COL3A1P02461 1466 aaPredicted RBP17.13■□□□□ 0.33
USP42-207ENST00000521713 NCOA4Q13772 614 aa17.13■□□□□ 0.33
USP42-207ENST00000521713 ARID5BQ14865 1188 aa17.13■□□□□ 0.33
USP42-207ENST00000521713 RHOT1Q8IXI2 618 aa17.13■□□□□ 0.33
USP42-207ENST00000521713 CCDC138Q96M89 665 aa17.13■□□□□ 0.33
USP42-207ENST00000521713 PARVAQ9NVD7 372 aa17.13■□□□□ 0.33
USP42-207ENST00000521713 FARP1Q9Y4F1 1045 aaPredicted RBP17.13■□□□□ 0.33
USP42-207ENST00000521713 MANSC4A6NHS7 340 aaPredicted RBP17.12■□□□□ 0.33
USP42-207ENST00000521713 GYG2O15488 501 aa17.12■□□□□ 0.33
USP42-207ENST00000521713 SLC7A5Q01650 507 aa17.12■□□□□ 0.33
USP42-207ENST00000521713 KIAA1755Q5JYT7 1200 aa17.12■□□□□ 0.33
USP42-207ENST00000521713 DACT2Q5SW24 774 aa17.12■□□□□ 0.33
USP42-207ENST00000521713 GRAMD4Q6IC98 578 aa17.12■□□□□ 0.33
USP42-207ENST00000521713 NOTUMQ6P988 496 aa17.12■□□□□ 0.33
USP42-207ENST00000521713 PDXDC1Q6P996 788 aa17.12■□□□□ 0.33
USP42-207ENST00000521713 APLFQ8IW19 511 aaPredicted RBP17.12■□□□□ 0.33
USP42-207ENST00000521713 KCNB2Q92953 911 aa17.12■□□□□ 0.33
USP42-207ENST00000521713 FAF2Q96CS3 445 aa17.12■□□□□ 0.33
USP42-207ENST00000521713 CHMP6Q96FZ7 201 aa17.12■□□□□ 0.33
USP42-207ENST00000521713 FNDC3AQ9Y2H6 1198 aaKnown RBP17.12■□□□□ 0.33
USP42-207ENST00000521713 ORC6Q9Y5N6 252 aa17.12■□□□□ 0.33
USP42-207ENST00000521713 CA4P22748 312 aa17.12■□□□□ 0.33
USP42-207ENST00000521713 EEF1DP29692 281 aaKnown RBP17.12■□□□□ 0.33
USP42-207ENST00000521713 GFPT1Q06210 699 aaPredicted RBP17.12■□□□□ 0.33
USP42-207ENST00000521713 CCDC92Q53HC0 331 aaPredicted RBP17.12■□□□□ 0.33
USP42-207ENST00000521713 ZNF484Q5JVG2 852 aa17.12■□□□□ 0.33
USP42-207ENST00000521713 TTC25Q96NG3 672 aa17.12■□□□□ 0.33
USP42-207ENST00000521713 TAF6LQ9Y6J9 622 aa17.12■□□□□ 0.33
USP42-207ENST00000521713 IQANK1A0A1B0GTG1 560 aa17.12■□□□□ 0.33
USP42-207ENST00000521713 ANKRD65E5RJM6 399 aa17.12■□□□□ 0.33
USP42-207ENST00000521713 MSH4O15457 936 aa17.12■□□□□ 0.33
USP42-207ENST00000521713 ZFXP17010 805 aaPredicted RBP17.12■□□□□ 0.33
USP42-207ENST00000521713 NUDT18Q6ZVK8 323 aa17.12■□□□□ 0.33
USP42-207ENST00000521713 AP1M1Q9BXS5 423 aa17.12■□□□□ 0.33
USP42-207ENST00000521713 C17orf102A2RUQ5 167 aa17.12■□□□□ 0.33
USP42-207ENST00000521713 SREBF1P36956 1147 aa17.12■□□□□ 0.33
USP42-207ENST00000521713 INPP1P49441 399 aa17.12■□□□□ 0.33
USP42-207ENST00000521713 TRIP13Q15645 432 aaPredicted RBP17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms