RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 CACNG4Q9UBN1 327 aa15□□□□□ -0.01
TCOF1-215ENST00000515516 LIMD1Q9UGP4 676 aa15□□□□□ -0.01
TCOF1-215ENST00000515516 SORCS3Q9UPU3 1222 aa15□□□□□ -0.01
TCOF1-215ENST00000515516 VPS37CA5D8V6 355 aaPredicted RBP14.99□□□□□ -0.01
TCOF1-215ENST00000515516 H0YCG3 227 aa14.99□□□□□ -0.01
TCOF1-215ENST00000515516 KIF4AO95239 1232 aa14.99□□□□□ -0.01
TCOF1-215ENST00000515516 SPATA31D3P0C874 917 aa14.99□□□□□ -0.01
TCOF1-215ENST00000515516 MYBP10242 640 aa14.99□□□□□ -0.01
TCOF1-215ENST00000515516 MCF2P10911 925 aa14.99□□□□□ -0.01
TCOF1-215ENST00000515516 PLS3P13797 630 aa14.99□□□□□ -0.01
TCOF1-215ENST00000515516 GRM5P41594 1212 aa14.99□□□□□ -0.01
TCOF1-215ENST00000515516 DCLRE1AQ6PJP8 1040 aa14.99□□□□□ -0.01
TCOF1-215ENST00000515516 SPATA31D4Q6ZUB0 917 aa14.99□□□□□ -0.01
TCOF1-215ENST00000515516 GLYCTKQ8IVS8 523 aa14.99□□□□□ -0.01
TCOF1-215ENST00000515516 SPIRE2Q8WWL2 714 aa14.99□□□□□ -0.01
TCOF1-215ENST00000515516 STAMQ92783 540 aa14.99□□□□□ -0.01
TCOF1-215ENST00000515516 ACAP3Q96P50 834 aa14.99□□□□□ -0.01
TCOF1-215ENST00000515516 PAAF1Q9BRP4 392 aa14.99□□□□□ -0.01
TCOF1-215ENST00000515516 TARS2Q9BW92 718 aaKnown RBP14.99□□□□□ -0.01
TCOF1-215ENST00000515516 SLC38A7Q9NVC3 462 aa14.99□□□□□ -0.01
TCOF1-215ENST00000515516 LARSQ9P2J5 1176 aaKnown RBP14.99□□□□□ -0.01
TCOF1-215ENST00000515516 TGM5O43548 720 aa14.98□□□□□ -0.01
TCOF1-215ENST00000515516 TRAPPC3O43617 180 aa14.98□□□□□ -0.01
TCOF1-215ENST00000515516 B3GAT3O94766 335 aa14.98□□□□□ -0.01
TCOF1-215ENST00000515516 HARSP12081 509 aaKnown RBP14.98□□□□□ -0.01
TCOF1-215ENST00000515516 LONP1P36776 959 aaKnown RBP14.98□□□□□ -0.01
TCOF1-215ENST00000515516 MATR3P43243 847 aaKnown RBP eCLIP14.98□□□□□ -0.01
TCOF1-215ENST00000515516 SLC12A3P55017 1021 aa14.98□□□□□ -0.01
TCOF1-215ENST00000515516 OSTNP61366 133 aa14.98□□□□□ -0.01
TCOF1-215ENST00000515516 MAPK7Q13164 816 aa14.98□□□□□ -0.01
TCOF1-215ENST00000515516 GLRA4Q5JXX5 417 aa14.98□□□□□ -0.01
TCOF1-215ENST00000515516 MPZL3Q6UWV2 235 aa14.98□□□□□ -0.01
TCOF1-215ENST00000515516 SMG7Q92540 1137 aaKnown RBP14.98□□□□□ -0.01
TCOF1-215ENST00000515516 NTPCRQ9BSD7 190 aaKnown RBP14.98□□□□□ -0.01
TCOF1-215ENST00000515516 CDT1Q9H211 546 aa14.98□□□□□ -0.01
TCOF1-215ENST00000515516 KRT18P05783 430 aaKnown RBP14.97□□□□□ -0.01
TCOF1-215ENST00000515516 RPL17P18621 184 aaKnown RBP14.97□□□□□ -0.01
TCOF1-215ENST00000515516 CUL4AQ13619 759 aa14.97□□□□□ -0.01
TCOF1-215ENST00000515516 DHX8Q14562 1220 aaKnown RBP14.97□□□□□ -0.01
TCOF1-215ENST00000515516 SF3A1Q15459 793 aaKnown RBP14.97□□□□□ -0.01
TCOF1-215ENST00000515516 PSMD5Q16401 504 aa14.97□□□□□ -0.01
TCOF1-215ENST00000515516 TMEM119Q4V9L6 283 aa14.97□□□□□ -0.01
TCOF1-215ENST00000515516 RTP2Q5QGT7 225 aa14.97□□□□□ -0.01
TCOF1-215ENST00000515516 PRSS55Q6UWB4 352 aaPredicted RBP14.97□□□□□ -0.01
TCOF1-215ENST00000515516 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.97□□□□□ -0.01
TCOF1-215ENST00000515516 FBXL6Q8N531 539 aa14.97□□□□□ -0.01
TCOF1-215ENST00000515516 PIK3R5Q8WYR1 880 aa14.97□□□□□ -0.01
TCOF1-215ENST00000515516 BICD1Q96G01 975 aa14.97□□□□□ -0.01
TCOF1-215ENST00000515516 DDX27Q96GQ7 796 aaKnown RBP14.97□□□□□ -0.01
TCOF1-215ENST00000515516 PPP1R10Q96QC0 940 aaKnown RBP14.97□□□□□ -0.01
TCOF1-215ENST00000515516 RHOBTB2Q9BYZ6 727 aa14.97□□□□□ -0.01
TCOF1-215ENST00000515516 CXCL16Q9H2A7 254 aa14.97□□□□□ -0.01
TCOF1-215ENST00000515516 PTPRHQ9HD43 1115 aa14.97□□□□□ -0.01
TCOF1-215ENST00000515516 ZDHHC7Q9NXF8 308 aa14.97□□□□□ -0.01
TCOF1-215ENST00000515516 ANKFY1Q9P2R3 1169 aa14.97□□□□□ -0.01
TCOF1-215ENST00000515516 SMIM28A0A1B0GU29 152 aa14.96□□□□□ -0.01
TCOF1-215ENST00000515516 TMEM189-UBE2V1I3L0A0 370 aa14.96□□□□□ -0.01
TCOF1-215ENST00000515516 TOM1L1O75674 476 aa14.96□□□□□ -0.01
TCOF1-215ENST00000515516 RFPL2O75678 378 aa14.96□□□□□ -0.01
TCOF1-215ENST00000515516 FAM13AO94988 1023 aa14.96□□□□□ -0.01
TCOF1-215ENST00000515516 ASGR2P07307 311 aa14.96□□□□□ -0.01
TCOF1-215ENST00000515516 GBP2P32456 591 aaPredicted RBP14.96□□□□□ -0.01
TCOF1-215ENST00000515516 CLCNKBP51801 687 aa14.96□□□□□ -0.01
TCOF1-215ENST00000515516 NAB2Q15742 525 aa14.96□□□□□ -0.01
TCOF1-215ENST00000515516 LIN9Q5TKA1 542 aa14.96□□□□□ -0.01
TCOF1-215ENST00000515516 TAS1R3Q7RTX0 852 aa14.96□□□□□ -0.01
TCOF1-215ENST00000515516 GPBP1Q86WP2 473 aa14.96□□□□□ -0.01
TCOF1-215ENST00000515516 TMEM161BQ8NDZ6 487 aa14.96□□□□□ -0.01
TCOF1-215ENST00000515516 LNX1Q8TBB1 728 aaPredicted RBP14.96□□□□□ -0.01
TCOF1-215ENST00000515516 PRRX2Q99811 253 aa14.96□□□□□ -0.01
TCOF1-215ENST00000515516 WDR6Q9NNW5 1121 aaKnown RBP14.96□□□□□ -0.01
TCOF1-215ENST00000515516 ODF2LQ9ULJ1 636 aa14.96□□□□□ -0.01
TCOF1-215ENST00000515516 NPHP3-ACAD11A0A0J9YXS1 232 aa14.95□□□□□ -0.02
TCOF1-215ENST00000515516 CLDN3O15551 220 aa14.95□□□□□ -0.02
TCOF1-215ENST00000515516 BRD1O95696 1058 aa14.95□□□□□ -0.02
TCOF1-215ENST00000515516 MAPTP10636 758 aaKnown RBP14.95□□□□□ -0.02
TCOF1-215ENST00000515516 SCP2P22307 547 aa14.95□□□□□ -0.02
TCOF1-215ENST00000515516 PROZP22891 400 aa14.95□□□□□ -0.02
TCOF1-215ENST00000515516 CACNB1Q02641 598 aaPredicted RBP14.95□□□□□ -0.02
TCOF1-215ENST00000515516 NOLC1Q14978 699 aaKnown RBP eCLIP14.95□□□□□ -0.02
TCOF1-215ENST00000515516 UPP1Q16831 310 aa14.95□□□□□ -0.02
TCOF1-215ENST00000515516 LILRA6Q6PI73 481 aa14.95□□□□□ -0.02
TCOF1-215ENST00000515516 ALKAL1Q6UXT8 129 aa14.95□□□□□ -0.02
TCOF1-215ENST00000515516 ZPBP2Q6X784 338 aa14.95□□□□□ -0.02
TCOF1-215ENST00000515516 MYCT1Q8N699 235 aa14.95□□□□□ -0.02
TCOF1-215ENST00000515516 CEP120Q8N960 986 aa14.95□□□□□ -0.02
TCOF1-215ENST00000515516 ASIC4Q96FT7 647 aa14.95□□□□□ -0.02
TCOF1-215ENST00000515516 SNX27Q96L92 541 aa14.95□□□□□ -0.02
TCOF1-215ENST00000515516 CLSTN3Q9BQT9 956 aa14.95□□□□□ -0.02
TCOF1-215ENST00000515516 PRKD2Q9BZL6 878 aa14.95□□□□□ -0.02
TCOF1-215ENST00000515516 ZHX3Q9H4I2 956 aa14.95□□□□□ -0.02
TCOF1-215ENST00000515516 CLUHO75153 1309 aa14.94□□□□□ -0.02
TCOF1-215ENST00000515516 TBCAO75347 108 aaKnown RBP14.94□□□□□ -0.02
TCOF1-215ENST00000515516 ZMYND10O75800 440 aa14.94□□□□□ -0.02
TCOF1-215ENST00000515516 KCNE1P15382 129 aa14.94□□□□□ -0.02
TCOF1-215ENST00000515516 PLCG1P19174 1290 aa14.94□□□□□ -0.02
TCOF1-215ENST00000515516 RPL9P32969 192 aaKnown RBP14.94□□□□□ -0.02
TCOF1-215ENST00000515516 KYAT1Q16773 422 aa14.94□□□□□ -0.02
TCOF1-215ENST00000515516 ARSHQ5FYA8 562 aa14.94□□□□□ -0.02
TCOF1-215ENST00000515516 XKR4Q5GH76 650 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms