RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 CCDC113Q9H0I3 377 aa22.04■■□□□ 1.12
USP53-208ENST00000514305 MINDY3Q9H8M7 445 aa22.04■■□□□ 1.12
USP53-208ENST00000514305 SLC39A2Q9NP94 309 aa22.04■■□□□ 1.12
USP53-208ENST00000514305 TLR9Q9NR96 1032 aa22.04■■□□□ 1.12
USP53-208ENST00000514305 TYW1Q9NV66 732 aaKnown RBP22.04■■□□□ 1.12
USP53-208ENST00000514305 CNTNAP2Q9UHC6 1331 aa22.04■■□□□ 1.12
USP53-208ENST00000514305 FAM86C2PA6NEL3 165 aa22.03■■□□□ 1.12
USP53-208ENST00000514305 CSDE1O75534 798 aaKnown RBP22.03■■□□□ 1.12
USP53-208ENST00000514305 FGF18O76093 207 aa22.03■■□□□ 1.12
USP53-208ENST00000514305 LIG4P49917 911 aa22.03■■□□□ 1.12
USP53-208ENST00000514305 RAB27AP51159 221 aa22.03■■□□□ 1.12
USP53-208ENST00000514305 SNRPFP62306 86 aaKnown RBP22.03■■□□□ 1.12
USP53-208ENST00000514305 ZNF658Q5TYW1 1059 aaPredicted RBP22.03■■□□□ 1.12
USP53-208ENST00000514305 TWF2Q6IBS0 349 aaKnown RBP22.03■■□□□ 1.12
USP53-208ENST00000514305 SLFN12LQ6IEE8 588 aa22.03■■□□□ 1.12
USP53-208ENST00000514305 ADGRD2Q7Z7M1 963 aa22.03■■□□□ 1.12
USP53-208ENST00000514305 RBM23Q86U06 439 aaKnown RBP22.03■■□□□ 1.12
USP53-208ENST00000514305 MAP4K3Q8IVH8 894 aa22.03■■□□□ 1.12
USP53-208ENST00000514305 FIZ1Q96SL8 496 aa22.03■■□□□ 1.12
USP53-208ENST00000514305 TCHPQ9BT92 498 aa22.03■■□□□ 1.12
USP53-208ENST00000514305 CGNQ9P2M7 1197 aaKnown RBP22.03■■□□□ 1.12
USP53-208ENST00000514305 MYH11P35749 1972 aa22.03■■□□□ 1.12
USP53-208ENST00000514305 FSD2A1L4K1 749 aa22.02■■□□□ 1.12
USP53-208ENST00000514305 HNRNPDLO14979 420 aaKnown RBP22.02■■□□□ 1.12
USP53-208ENST00000514305 TSPAN1O60635 241 aa22.02■■□□□ 1.12
USP53-208ENST00000514305 FGFR4P22455 802 aa22.02■■□□□ 1.12
USP53-208ENST00000514305 NFKBIBQ15653 356 aa22.02■■□□□ 1.12
USP53-208ENST00000514305 ATF7IP2Q5U623 682 aa22.02■■□□□ 1.12
USP53-208ENST00000514305 PDE12Q6L8Q7 609 aaKnown RBP22.02■■□□□ 1.12
USP53-208ENST00000514305 SLC27A1Q6PCB7 646 aa22.02■■□□□ 1.12
USP53-208ENST00000514305 RNF169Q8NCN4 708 aa22.02■■□□□ 1.12
USP53-208ENST00000514305 GOLGA5Q8TBA6 731 aa22.02■■□□□ 1.12
USP53-208ENST00000514305 ZNF507Q8TCN5 953 aa22.02■■□□□ 1.12
USP53-208ENST00000514305 TLE6Q9H808 572 aa22.02■■□□□ 1.12
USP53-208ENST00000514305 C11orf16Q9NQ32 467 aa22.02■■□□□ 1.12
USP53-208ENST00000514305 TNFSF13BQ9Y275 285 aa22.02■■□□□ 1.12
USP53-208ENST00000514305 A0A1B0GUA9 196 aa22.01■■□□□ 1.11
USP53-208ENST00000514305 DCXO43602 365 aa22.01■■□□□ 1.11
USP53-208ENST00000514305 TOM1L1O75674 476 aa22.01■■□□□ 1.11
USP53-208ENST00000514305 PPP1R37O75864 691 aa22.01■■□□□ 1.11
USP53-208ENST00000514305 ARF4P18085 180 aaPredicted RBP22.01■■□□□ 1.11
USP53-208ENST00000514305 MATR3P43243 847 aaKnown RBP eCLIP22.01■■□□□ 1.113e-9■■■■□ 24.3
USP53-208ENST00000514305 AMHR2Q16671 573 aa22.01■■□□□ 1.11
USP53-208ENST00000514305 KYAT1Q16773 422 aa22.01■■□□□ 1.11
USP53-208ENST00000514305 DCAF4L1Q3SXM0 396 aa22.01■■□□□ 1.11
USP53-208ENST00000514305 HS2ST1Q7LGA3 356 aa22.01■■□□□ 1.11
USP53-208ENST00000514305 ECHDC2Q86YB7 292 aa22.01■■□□□ 1.11
USP53-208ENST00000514305 LRRC43Q8N309 656 aa22.01■■□□□ 1.11
USP53-208ENST00000514305 PGBD4Q96DM1 585 aa22.01■■□□□ 1.11
USP53-208ENST00000514305 FAM122AQ96E09 287 aa22.01■■□□□ 1.11
USP53-208ENST00000514305 ACO2Q99798 780 aaKnown RBP22.01■■□□□ 1.11
USP53-208ENST00000514305 TRAIPQ9BWF2 469 aa22.01■■□□□ 1.11
USP53-208ENST00000514305 STRA6Q9BX79 667 aa22.01■■□□□ 1.11
USP53-208ENST00000514305 CWH43Q9H720 699 aa22.01■■□□□ 1.11
USP53-208ENST00000514305 HCSTQ9UBK5 93 aa22.01■■□□□ 1.11
USP53-208ENST00000514305 PUF60Q9UHX1 559 aaKnown RBP22.01■■□□□ 1.11
USP53-208ENST00000514305 CLDN3O15551 220 aa22■■□□□ 1.11
USP53-208ENST00000514305 PIGRP01833 764 aa22■■□□□ 1.11
USP53-208ENST00000514305 MYBP10242 640 aa22■■□□□ 1.11
USP53-208ENST00000514305 PPM1AP35813 382 aa22■■□□□ 1.11
USP53-208ENST00000514305 STK4Q13043 487 aa22■■□□□ 1.11
USP53-208ENST00000514305 BMT2Q1RMZ1 405 aa22■■□□□ 1.11
USP53-208ENST00000514305 ZC2HC1CQ53FD0 456 aaPredicted RBP22■■□□□ 1.11
USP53-208ENST00000514305 COBLL1Q53SF7 1204 aa22■■□□□ 1.11
USP53-208ENST00000514305 SASS6Q6UVJ0 657 aa22■■□□□ 1.11
USP53-208ENST00000514305 GUF1Q8N442 669 aaKnown RBP22■■□□□ 1.11
USP53-208ENST00000514305 RSPH1Q8WYR4 309 aa22■■□□□ 1.11
USP53-208ENST00000514305 MSLNLQ96KJ4 702 aa22■■□□□ 1.11
USP53-208ENST00000514305 CASD1Q96PB1 797 aa22■■□□□ 1.11
USP53-208ENST00000514305 CDCA3Q99618 268 aaPredicted RBP22■■□□□ 1.11
USP53-208ENST00000514305 GBP3Q9H0R5 595 aa22■■□□□ 1.11
USP53-208ENST00000514305 DACH1Q9UI36 760 aa22■■□□□ 1.11
USP53-208ENST00000514305 PCDHGC5Q9Y5F6 944 aa22■■□□□ 1.11
USP53-208ENST00000514305 C5orf42Q9H799 3197 aa22■■□□□ 1.11
USP53-208ENST00000514305 PRR33A8MZF0 331 aa21.99■■□□□ 1.11
USP53-208ENST00000514305 KIAA0391O15091 583 aaKnown RBP21.99■■□□□ 1.11
USP53-208ENST00000514305 PRPF6O94906 941 aaKnown RBP21.99■■□□□ 1.11
USP53-208ENST00000514305 EOMESO95936 686 aa21.99■■□□□ 1.11
USP53-208ENST00000514305 PLA2G5P39877 138 aa21.99■■□□□ 1.11
USP53-208ENST00000514305 KNOP1Q1ED39 458 aaKnown RBP21.99■■□□□ 1.11
USP53-208ENST00000514305 EPM2AIP1Q7L775 607 aaPredicted RBP21.99■■□□□ 1.11
USP53-208ENST00000514305 CPB2Q96IY4 423 aa21.99■■□□□ 1.11
USP53-208ENST00000514305 ZNF558Q96NG5 402 aa21.99■■□□□ 1.11
USP53-208ENST00000514305 TARS2Q9BW92 718 aaKnown RBP21.99■■□□□ 1.11
USP53-208ENST00000514305 UBN1Q9NPG3 1134 aa21.99■■□□□ 1.11
USP53-208ENST00000514305 MAN1B1Q9UKM7 699 aa21.99■■□□□ 1.11
USP53-208ENST00000514305 LZTS1Q9Y250 596 aa21.99■■□□□ 1.11
USP53-208ENST00000514305 A0A0U1RQF3 1178 aa21.98■■□□□ 1.11
USP53-208ENST00000514305 CALUO43852 315 aaPredicted RBP21.98■■□□□ 1.11
USP53-208ENST00000514305 SRGAP2BP0DMP2 458 aa21.98■■□□□ 1.11
USP53-208ENST00000514305 HOXA11P31270 313 aaPredicted RBP21.98■■□□□ 1.11
USP53-208ENST00000514305 KRT17Q04695 432 aa21.98■■□□□ 1.11
USP53-208ENST00000514305 CAVIN1Q6NZI2 390 aaKnown RBP21.98■■□□□ 1.11
USP53-208ENST00000514305 KCNT2Q6UVM3 1135 aa21.98■■□□□ 1.11
USP53-208ENST00000514305 MPZL3Q6UWV2 235 aa21.98■■□□□ 1.11
USP53-208ENST00000514305 TAS1R3Q7RTX0 852 aa21.98■■□□□ 1.11
USP53-208ENST00000514305 SMRP1Q8NCR6 262 aa21.98■■□□□ 1.11
USP53-208ENST00000514305 HPS3Q969F9 1004 aa21.98■■□□□ 1.11
USP53-208ENST00000514305 ENTPD7Q9NQZ7 604 aa21.98■■□□□ 1.11
USP53-208ENST00000514305 CLEC1BQ9P126 229 aa21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms