RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 PARVGQ9HBI0 331 aa10.3□□□□□ -0.76
VCAN-210ENST00000513960 TAS2R14Q9NYV8 317 aa10.3□□□□□ -0.76
VCAN-210ENST00000513960 SCOCQ9UIL1 159 aa10.3□□□□□ -0.76
VCAN-210ENST00000513960 MRPL11Q9Y3B7 192 aaKnown RBP10.3□□□□□ -0.76
VCAN-210ENST00000513960 PHF2O75151 1096 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 ENTPD5O75356 428 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 RIPK1Q13546 671 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 BLMHQ13867 455 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 DHX34Q14147 1143 aaKnown RBP10.29□□□□□ -0.76
VCAN-210ENST00000513960 RPUSD2Q8IZ73 545 aaKnown RBP10.29□□□□□ -0.76
VCAN-210ENST00000513960 OLFML3Q9NRN5 406 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 AJAP1Q9UKB5 411 aaPredicted RBP10.29□□□□□ -0.76
VCAN-210ENST00000513960 C2CD2Q9Y426 696 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 IGSF9BQ9UPX0 1349 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 EP400Q96L91 3159 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 KIAA0391O15091 583 aaKnown RBP10.29□□□□□ -0.76
VCAN-210ENST00000513960 RASSF2P50749 326 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 STRN3Q13033 797 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 DLGAP5Q15398 846 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 BMT2Q1RMZ1 405 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 RNF220Q5VTB9 566 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 DUPD1Q68J44 220 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 SLC30A10Q6XR72 485 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 FAM178BQ8IXR5 827 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 ACER1Q8TDN7 264 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 ALG3Q92685 438 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 MYLK2Q9H1R3 596 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 PIDD1Q9HB75 910 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 RXFP1Q9HBX9 757 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 ALG13Q9NP73 1137 aaKnown RBP10.29□□□□□ -0.76
VCAN-210ENST00000513960 FRMD4BQ9Y2L6 1034 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 ATRNL1Q5VV63 1379 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 hCG_2014768A0A024R1R8 64 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 BAG2O95816 211 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 LINGO3P0C6S8 592 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 UBTFL6P0CB48 400 aaPredicted RBP10.29□□□□□ -0.76
VCAN-210ENST00000513960 NMT1P30419 496 aaKnown RBP10.29□□□□□ -0.76
VCAN-210ENST00000513960 CHRNA3P32297 505 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 PRELPP51888 382 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 KCNA1Q09470 495 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 ZNF365Q70YC5 407 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 OTOP1Q7RTM1 612 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 C4orf33Q8N1A6 199 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 SPIRE2Q8WWL2 714 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 ATG4AQ8WYN0 398 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 NACC1Q96RE7 527 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 ZNF577Q9BSK1 485 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 HEMGNQ9BXL5 484 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 VPS37BQ9H9H4 285 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 SYNPO2Q9UMS6 1093 aa10.29□□□□□ -0.76
VCAN-210ENST00000513960 ASTN1O14525 1302 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 ANKRD63C9JTQ0 380 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 EXOC3O60645 756 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 SLITRK3O94933 977 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 FTLP02792 175 aaPredicted RBP10.28□□□□□ -0.76
VCAN-210ENST00000513960 PECAM1P16284 738 aaPredicted RBP10.28□□□□□ -0.76
VCAN-210ENST00000513960 HOXD13P35453 343 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 KRT17Q04695 432 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 RRP1BQ14684 758 aaKnown RBP10.28□□□□□ -0.76
VCAN-210ENST00000513960 RNF207Q6ZRF8 634 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 SLC35C1Q96A29 364 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 CYTH2Q99418 400 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 HSD17B14Q9BPX1 270 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 WDR11Q9BZH6 1224 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 TMX2Q9Y320 296 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 GREB1LQ9C091 1923 aaPredicted RBP10.28□□□□□ -0.76
VCAN-210ENST00000513960 CCDC160A6NGH7 325 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 PODXLO00592 558 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 EIF3DO15371 548 aaKnown RBP eCLIP10.28□□□□□ -0.76
VCAN-210ENST00000513960 CLDN3O15551 220 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 ATF2P15336 505 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 ABL2P42684 1182 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 EPHA7Q15375 998 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 CEP55Q53EZ4 464 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 EAPPQ56P03 285 aaPredicted RBP10.28□□□□□ -0.76
VCAN-210ENST00000513960 LNX1Q8TBB1 728 aaPredicted RBP10.28□□□□□ -0.76
VCAN-210ENST00000513960 FGD4Q96M96 766 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.28□□□□□ -0.76
VCAN-210ENST00000513960 PFASO15067 1338 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 IGLV3-22A0A075B6J6 115 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 ARHGEF35A5YM69 484 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 COMTP21964 271 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 CA4P22748 312 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 SOX5P35711 763 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 SERPINB4P48594 390 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 BNIP1Q12981 228 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 LAMB3Q13751 1172 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 ZC2HC1CQ53FD0 456 aaPredicted RBP10.28□□□□□ -0.76
VCAN-210ENST00000513960 ODR4Q5SWX8 454 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 EIF1ADQ8N9N8 165 aaKnown RBP10.28□□□□□ -0.76
VCAN-210ENST00000513960 SPOCK2Q92563 424 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 WDR18Q9BV38 432 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 UBE2TQ9NPD8 197 aaPredicted RBP10.28□□□□□ -0.76
VCAN-210ENST00000513960 SEL1LQ9UBV2 794 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 ANAPC5Q9UJX4 755 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 USTQ9Y2C2 406 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 ARFGEF1Q9Y6D6 1849 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 RPTORQ8N122 1335 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 SYNGAP1Q96PV0 1343 aa10.28□□□□□ -0.76
VCAN-210ENST00000513960 A0A0G2JND7 137 aa10.27□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms