RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 MYH11P35749 1972 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 ATAD5Q96QE3 1844 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 NFIBO00712 420 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 SCP2P22307 547 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 MYO1EQ12965 1108 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 CYP1B1Q16678 543 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 CYFIP1Q7L576 1253 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 CROCCP2Q86T23 111 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 PRCCQ92733 491 aaPredicted RBP9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 TMEM109Q9BVC6 243 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 EHMT1Q9H9B1 1298 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 TRIM33Q9UPN9 1127 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 GSTTP1A0A1W2PQM5 241 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 ADSSP30520 456 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 CDR2Q01850 454 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 CC2D2BQ6DHV5 1058 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 CYP4F22Q6NT55 531 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 B3GNT9Q6UX72 402 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 FAM47EQ6ZV65 393 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 MRRFQ96E11 262 aaKnown RBP9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 NT5C1BQ96P26 610 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 LRRC19Q9H756 370 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 ECT2Q9H8V3 914 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 SLC12A4Q9UP95 1085 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 TMX2Q9Y320 296 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 C10orf71Q711Q0 1435 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 CYP1A2P05177 515 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 RRM1P23921 792 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 GBP2P32456 591 aaPredicted RBP9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 SPP2Q13103 211 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 XKR9Q5GH70 373 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 ZFYVE27Q5T4F4 411 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 KRT39Q6A163 491 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 TRMT10CQ7L0Y3 403 aaKnown RBP9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 HELQQ8TDG4 1101 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 PSPC1Q8WXF1 523 aaKnown RBP9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 KLHL29Q96CT2 875 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 VEZTQ9HBM0 779 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 ANAPC5Q9UJX4 755 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 CCPG1Q9ULG6 757 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 USTQ9Y2C2 406 aa9.89□□□□□ -0.83
LIMCH1-215ENST00000512632 MYCLP12524 364 aaPredicted RBP9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 EIF2AK2P19525 551 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 CNGA1P29973 690 aa9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 STX2P32856 288 aa9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 QARSP47897 775 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 MYBPC2Q14324 1141 aa9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 UGCGQ16739 394 aa9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 PARD3BQ8TEW8 1205 aa9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 RIT2Q99578 217 aa9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 A8MUI8 341 aa9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 IGF2BP3O00425 579 aaKnown RBP eCLIP9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 FSCN2O14926 492 aa9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 P4HA2O15460 535 aa9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 SUN1O94901 812 aa9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 TTC4O95801 387 aa9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 CETPP11597 493 aa9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 YWHABP31946 246 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 SLC8A1P32418 973 aa9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 NCALDP61601 193 aa9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 TRAF1Q13077 416 aa9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 ACAD10Q6JQN1 1059 aa9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 CAPN12Q6ZSI9 719 aa9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 MASTLQ96GX5 879 aa9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 ROPN1BQ9BZX4 212 aaPredicted RBP9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 ROPN1Q9HAT0 212 aaPredicted RBP9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 ZNF831Q5JPB2 1677 aa9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 ALDH5A1P51649 535 aaPredicted RBP9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 TNFAIP8L3Q5GJ75 292 aa9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 MFSD5Q6N075 450 aa9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 SV2AQ7L0J3 742 aa9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 PLVAPQ9BX97 442 aa9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 RAB20Q9NX57 234 aa9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 UVRAGQ9P2Y5 699 aa9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 SERPINA10Q9UK55 444 aa9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 DHX15O43143 795 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 MTA2O94776 668 aa9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 ATF2P15336 505 aa9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 CLNS1AP54105 237 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 PASD1Q8IV76 773 aa9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 MORC4Q8TE76 937 aa9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 TACO1Q9BSH4 297 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 TCEAL9Q9UHQ7 104 aa9.88□□□□□ -0.83
LIMCH1-215ENST00000512632 DENND3A2RUS2 1198 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 ATP9AO75110 1047 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 ENTPD3O75355 529 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 GJB6O95452 261 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 GSTA1P08263 222 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 RALAP11233 206 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 ITIH2P19823 946 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 IVDP26440 423 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 SP4Q02446 784 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 FITM2Q8N6M3 262 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 FBXL13Q8NEE6 735 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 AGAP11Q8TF27 550 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 POMGNT1Q8WZA1 660 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 RANBP17Q9H2T7 1088 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 CCDC134Q9H6E4 229 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 NAALADL1Q9UQQ1 740 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 GRIN3BO60391 1043 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms