RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 GFAPP14136 432 aa9.41□□□□□ -0.9
VCAN-208ENST00000512590 MXI1P50539 228 aa9.41□□□□□ -0.9
VCAN-208ENST00000512590 SH3BGRP55822 239 aaPredicted RBP9.41□□□□□ -0.9
VCAN-208ENST00000512590 DGKDQ16760 1214 aa9.41□□□□□ -0.9
VCAN-208ENST00000512590 ZRANB3Q5FWF4 1079 aa9.41□□□□□ -0.9
VCAN-208ENST00000512590 ERLEC1Q96DZ1 483 aa9.41□□□□□ -0.9
VCAN-208ENST00000512590 MCCC1Q96RQ3 725 aaPredicted RBP9.41□□□□□ -0.9
VCAN-208ENST00000512590 TACO1Q9BSH4 297 aaKnown RBP9.41□□□□□ -0.9
VCAN-208ENST00000512590 NMRK1Q9NWW6 199 aa9.41□□□□□ -0.9
VCAN-208ENST00000512590 CD274Q9NZQ7 290 aa9.41□□□□□ -0.9
VCAN-208ENST00000512590 TRIM10Q9UDY6 481 aa9.41□□□□□ -0.9
VCAN-208ENST00000512590 WARS2Q9UGM6 360 aaKnown RBP9.41□□□□□ -0.9
VCAN-208ENST00000512590 NRBP1Q9UHY1 535 aa9.41□□□□□ -0.9
VCAN-208ENST00000512590 BNC1Q01954 994 aa9.41□□□□□ -0.9
VCAN-208ENST00000512590 TUBB2AQ13885 445 aa9.41□□□□□ -0.9
VCAN-208ENST00000512590 SMU1Q2TAY7 513 aa9.41□□□□□ -0.9
VCAN-208ENST00000512590 PABPC5Q96DU9 382 aaKnown RBP9.41□□□□□ -0.9
VCAN-208ENST00000512590 EYA1Q99502 592 aa9.41□□□□□ -0.9
VCAN-208ENST00000512590 TUBB2BQ9BVA1 445 aa9.41□□□□□ -0.9
VCAN-208ENST00000512590 PNMA8BQ9ULN7 279 aaPredicted RBP9.41□□□□□ -0.9
VCAN-208ENST00000512590 TBKBP1A7MCY6 615 aa9.41□□□□□ -0.9
VCAN-208ENST00000512590 CYP27B1O15528 508 aa9.41□□□□□ -0.9
VCAN-208ENST00000512590 CYTH3O43739 400 aa9.41□□□□□ -0.9
VCAN-208ENST00000512590 MTA2O94776 668 aa9.41□□□□□ -0.9
VCAN-208ENST00000512590 HNRNPH2P55795 449 aaKnown RBP9.41□□□□□ -0.9
VCAN-208ENST00000512590 PEX6Q13608 980 aa9.41□□□□□ -0.9
VCAN-208ENST00000512590 EFTUD2Q15029 972 aaKnown RBP eCLIP9.41□□□□□ -0.9
VCAN-208ENST00000512590 TEAD4Q15561 434 aa9.41□□□□□ -0.9
VCAN-208ENST00000512590 NAA35Q5VZE5 725 aa9.41□□□□□ -0.9
VCAN-208ENST00000512590 SWSAP1Q6NVH7 229 aa9.41□□□□□ -0.9
VCAN-208ENST00000512590 TAS1R3Q7RTX0 852 aa9.41□□□□□ -0.9
VCAN-208ENST00000512590 CACUL1Q86Y37 369 aa9.41□□□□□ -0.9
VCAN-208ENST00000512590 CEP70Q8NHQ1 597 aa9.41□□□□□ -0.9
VCAN-208ENST00000512590 SYTL5Q8TDW5 730 aaPredicted RBP9.41□□□□□ -0.9
VCAN-208ENST00000512590 DDI1Q8WTU0 396 aa9.41□□□□□ -0.9
VCAN-208ENST00000512590 PHACTR3Q96KR7 559 aa9.41□□□□□ -0.9
VCAN-208ENST00000512590 VPS11Q9H270 941 aa9.41□□□□□ -0.9
VCAN-208ENST00000512590 TRPC4Q9UBN4 977 aa9.41□□□□□ -0.9
VCAN-208ENST00000512590 SRP68Q9UHB9 627 aaKnown RBP9.41□□□□□ -0.9
VCAN-208ENST00000512590 GMEB2Q9UKD1 530 aa9.41□□□□□ -0.9
VCAN-208ENST00000512590 M0QYT0 321 aa9.4□□□□□ -0.9
VCAN-208ENST00000512590 GPR182O15218 404 aa9.4□□□□□ -0.9
VCAN-208ENST00000512590 NBNO60934 754 aa9.4□□□□□ -0.9
VCAN-208ENST00000512590 ABCE1P61221 599 aaKnown RBP9.4□□□□□ -0.9
VCAN-208ENST00000512590 TRIM68Q6AZZ1 485 aa9.4□□□□□ -0.9
VCAN-208ENST00000512590 CYP4F22Q6NT55 531 aa9.4□□□□□ -0.9
VCAN-208ENST00000512590 HERC6Q8IVU3 1022 aa9.4□□□□□ -0.9
VCAN-208ENST00000512590 ATPAF2Q8N5M1 289 aa9.4□□□□□ -0.9
VCAN-208ENST00000512590 DDX41Q9UJV9 622 aaKnown RBP9.4□□□□□ -0.9
VCAN-208ENST00000512590 NUP160Q12769 1436 aa9.4□□□□□ -0.9
VCAN-208ENST00000512590 ADCY9O60503 1353 aa9.4□□□□□ -0.9
VCAN-208ENST00000512590 A0A1B0GUA9 196 aa9.4□□□□□ -0.9
VCAN-208ENST00000512590 GCFC2P16383 781 aaKnown RBP9.4□□□□□ -0.9
VCAN-208ENST00000512590 NR2F2P24468 414 aa9.4□□□□□ -0.9
VCAN-208ENST00000512590 ARL3P36405 182 aa9.4□□□□□ -0.9
VCAN-208ENST00000512590 CACNB1Q02641 598 aaPredicted RBP9.4□□□□□ -0.9
VCAN-208ENST00000512590 HEATR6Q6AI08 1181 aaKnown RBP9.4□□□□□ -0.9
VCAN-208ENST00000512590 LRRC74BQ6ZQY2 392 aa9.4□□□□□ -0.9
VCAN-208ENST00000512590 PIP4K2CQ8TBX8 421 aa9.4□□□□□ -0.9
VCAN-208ENST00000512590 CRELD1Q96HD1 420 aa9.4□□□□□ -0.9
VCAN-208ENST00000512590 CGRRF1Q99675 332 aa9.4□□□□□ -0.9
VCAN-208ENST00000512590 SENP6Q9GZR1 1112 aaPredicted RBP9.4□□□□□ -0.9
VCAN-208ENST00000512590 KIAA1586Q9HCI6 787 aa9.4□□□□□ -0.9
VCAN-208ENST00000512590 HMX1Q9NP08 348 aaPredicted RBP9.4□□□□□ -0.9
VCAN-208ENST00000512590 GGA3Q9NZ52 723 aa9.4□□□□□ -0.9
VCAN-208ENST00000512590 ABCB11O95342 1321 aa9.4□□□□□ -0.9
VCAN-208ENST00000512590 MTRF1O75570 445 aaKnown RBP9.4□□□□□ -0.9
VCAN-208ENST00000512590 TRIM27P14373 513 aa9.4□□□□□ -0.9
VCAN-208ENST00000512590 IL2P60568 153 aa9.4□□□□□ -0.9
VCAN-208ENST00000512590 SCARF1Q14162 830 aa9.4□□□□□ -0.9
VCAN-208ENST00000512590 TBC1D9BQ66K14 1250 aa9.4□□□□□ -0.9
VCAN-208ENST00000512590 R3HCC1LQ7Z5L2 792 aaKnown RBP9.4□□□□□ -0.9
VCAN-208ENST00000512590 ZNF655Q8N720 491 aaPredicted RBP9.4□□□□□ -0.9
VCAN-208ENST00000512590 B3GALNT2Q8NCR0 500 aa9.4□□□□□ -0.9
VCAN-208ENST00000512590 ZNF512BQ96KM6 892 aaPredicted RBP9.4□□□□□ -0.9
VCAN-208ENST00000512590 TMEM245Q9H330 911 aa9.4□□□□□ -0.9
VCAN-208ENST00000512590 ABCC4O15439 1325 aa9.4□□□□□ -0.9
VCAN-208ENST00000512590 AP3D1O14617 1153 aa9.4□□□□□ -0.91
VCAN-208ENST00000512590 CTNNB1P35222 781 aa9.4□□□□□ -0.91
VCAN-208ENST00000512590 ELK3P41970 407 aa9.4□□□□□ -0.91
VCAN-208ENST00000512590 PMS1P54277 932 aaKnown RBP9.4□□□□□ -0.91
VCAN-208ENST00000512590 AP2B1P63010 937 aa9.4□□□□□ -0.91
VCAN-208ENST00000512590 USP41Q3LFD5 358 aa9.4□□□□□ -0.91
VCAN-208ENST00000512590 TRMT44Q8IYL2 757 aaKnown RBP9.4□□□□□ -0.91
VCAN-208ENST00000512590 ACOX2Q99424 681 aa9.4□□□□□ -0.91
VCAN-208ENST00000512590 PHACTR1Q9C0D0 580 aa9.4□□□□□ -0.91
VCAN-208ENST00000512590 KCNN2Q9H2S1 579 aa9.4□□□□□ -0.91
VCAN-208ENST00000512590 EML4Q9HC35 981 aaKnown RBP9.4□□□□□ -0.91
VCAN-208ENST00000512590 ATP8A1Q9Y2Q0 1164 aa9.4□□□□□ -0.91
VCAN-208ENST00000512590 SFI1A8K8P3 1242 aa9.4□□□□□ -0.91
VCAN-208ENST00000512590 GOLGA8TH3BQL2 631 aa9.4□□□□□ -0.91
VCAN-208ENST00000512590 VCAM1P19320 739 aa9.4□□□□□ -0.91
VCAN-208ENST00000512590 ETFBP38117 255 aa9.4□□□□□ -0.91
VCAN-208ENST00000512590 CACNB3P54284 484 aa9.4□□□□□ -0.91
VCAN-208ENST00000512590 NAALADL2Q58DX5 795 aa9.4□□□□□ -0.91
VCAN-208ENST00000512590 SNAP47Q5SQN1 464 aa9.4□□□□□ -0.91
VCAN-208ENST00000512590 LRRC8BQ6P9F7 803 aa9.4□□□□□ -0.91
VCAN-208ENST00000512590 TRIM65Q6PJ69 517 aa9.4□□□□□ -0.91
VCAN-208ENST00000512590 KRT222Q8N1A0 295 aa9.4□□□□□ -0.91
VCAN-208ENST00000512590 ZBTB38Q8NAP3 1195 aaPredicted RBP9.4□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms