RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 BTNL9Q6UXG8 535 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 KDM7AQ6ZMT4 941 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 CDAN1Q8IWY9 1227 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 AHI1Q8N157 1196 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 TTC39CQ8N584 583 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 PDLIM2Q96JY6 352 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 BTBD6Q96KE9 485 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 COX4I2Q96KJ9 171 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 TUBGCP5Q96RT8 1024 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 ESYT1Q9BSJ8 1104 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 MRPL1Q9BYD6 325 aaKnown RBP3.77□□□□□ -1.81
USP53-205ENST00000509769 TRIM10Q9UDY6 481 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 RABL2BQ9UNT1 228 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 PLCL2Q9UPR0 1127 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 MAPRE3Q9UPY8 281 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 GPC6Q9Y625 555 aaPredicted RBP3.77□□□□□ -1.81
USP53-205ENST00000509769 TUBAL3A6NHL2 446 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 ASAP2O43150 1006 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 MFAP3LO75121 409 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 GFPT2O94808 682 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 APOC1P02654 83 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 CALB1P05937 261 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 MYL4P12829 197 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 ACADLP28330 430 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 COPS2P61201 443 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 KNOP1Q1ED39 458 aaKnown RBP3.77□□□□□ -1.81
USP53-205ENST00000509769 PLEKHO1Q53GL0 409 aaPredicted RBP3.77□□□□□ -1.81
USP53-205ENST00000509769 FAM76BQ5HYJ3 339 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 SPOPLQ6IQ16 392 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 PET117Q6UWS5 81 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 TRPM8Q7Z2W7 1104 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 AKAP14Q86UN6 197 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 WDR49Q8IV35 697 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 KSR1Q8IVT5 923 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 LSM14AQ8ND56 463 aaKnown RBP3.77□□□□□ -1.81
USP53-205ENST00000509769 GIMAP8Q8ND71 665 aaPredicted RBP3.77□□□□□ -1.81
USP53-205ENST00000509769 HIPK4Q8NE63 616 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 TBC1D15Q8TC07 691 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 ELMO1Q92556 727 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 VMP1Q96GC9 406 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 KLHL4Q9C0H6 718 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 NAPBQ9H115 298 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 RPRD1BQ9NQG5 326 aaKnown RBP3.77□□□□□ -1.81
USP53-205ENST00000509769 DNAJC11Q9NVH1 559 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 WDR35Q9P2L0 1181 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 SORCS3Q9UPU3 1222 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 SPEF1Q9Y4P9 236 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 SAMM50Q9Y512 469 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 TTC21BQ7Z4L5 1316 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 LRRIQ4A6NIV6 560 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 ORC4O43929 436 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 IDH1O75874 414 aaKnown RBP3.76□□□□□ -1.81
USP53-205ENST00000509769 FARP2O94887 1054 aaPredicted RBP3.76□□□□□ -1.81
USP53-205ENST00000509769 NPTXRO95502 500 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 VEGFAP15692 232 aaPredicted RBP3.76□□□□□ -1.81
USP53-205ENST00000509769 GRK3P35626 688 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 SERPINB9P50453 376 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 EXOSC10Q01780 885 aaKnown RBP3.76□□□□□ -1.81
USP53-205ENST00000509769 TRIP4Q15650 581 aaPredicted RBP3.76□□□□□ -1.81
USP53-205ENST00000509769 PPM1LQ5SGD2 360 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 TBC1D9BQ66K14 1250 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 DTHD1Q6ZMT9 781 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 ARHGAP27Q6ZUM4 889 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 UBE3BQ7Z3V4 1068 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 FGD2Q7Z6J4 655 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 FERMT3Q86UX7 667 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 EIF1ADQ8N9N8 165 aaKnown RBP3.76□□□□□ -1.81
USP53-205ENST00000509769 PYROXD1Q8WU10 500 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 HDAC7Q8WUI4 952 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 EZH1Q92800 747 aaPredicted RBP3.76□□□□□ -1.81
USP53-205ENST00000509769 TBRG4Q969Z0 631 aaKnown RBP eCLIP3.76□□□□□ -1.81
USP53-205ENST00000509769 TMEM87BQ96K49 555 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 FAM118BQ9BPY3 351 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 ALG1Q9BT22 464 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 MTA3Q9BTC8 594 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 PAGR1Q9BTK6 254 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 NT5C3AQ9H0P0 336 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 OSBPL5Q9H0X9 879 aaPredicted RBP3.76□□□□□ -1.81
USP53-205ENST00000509769 XKR8Q9H6D3 395 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 METTL8Q9H825 291 aaKnown RBP3.76□□□□□ -1.81
USP53-205ENST00000509769 KRCC1Q9NPI7 259 aaPredicted RBP3.76□□□□□ -1.81
USP53-205ENST00000509769 RAD18Q9NS91 495 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 FAM86C1Q9NVL1 165 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 MLXQ9UH92 298 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 CROTQ9UKG9 612 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 BTBD3Q9Y2F9 522 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 TYW5A2RUC4 315 aaKnown RBP3.76□□□□□ -1.81
USP53-205ENST00000509769 LAD1O00515 517 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 NFIBO00712 420 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 DHX15O43143 795 aaKnown RBP3.76□□□□□ -1.81
USP53-205ENST00000509769 ZBTB43O43298 467 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 STX11O75558 287 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 TGM6O95932 706 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 ITGB3P05106 788 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 NQO1P15559 274 aaKnown RBP3.76□□□□□ -1.81
USP53-205ENST00000509769 NPR2P20594 1047 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 IL32P24001 234 aa3.76□□□□□ -1.81
USP53-205ENST00000509769 TKTP29401 623 aaKnown RBP3.76□□□□□ -1.81
USP53-205ENST00000509769 VCPP55072 806 aaKnown RBP3.76□□□□□ -1.81
USP53-205ENST00000509769 PSME3P61289 254 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms