RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 LRRC36Q1X8D7 754 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 ZMYM1Q5SVZ6 1142 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 RASGRP2Q7LDG7 609 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 CCDC36Q8IYA8 594 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 ELOA2Q8IYF1 753 aaPredicted RBP11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 ENKURQ8TC29 256 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 RMND5BQ96G75 393 aaPredicted RBP11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 MLPHQ9BV36 600 aaPredicted RBP11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 A0A087WXM4 84 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 LRRC53A6NM62 1247 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 E5RI56 91 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 SRGAP2O75044 1071 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 PLA2G4BP0C869 781 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 SPRP35270 261 aaPredicted RBP11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 SPANXN2Q5MJ10 180 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 PRR23BQ6ZRT6 265 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 MYCBPAPQ8TBZ2 947 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 ARL8AQ96BM9 186 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 TMA16Q96EY4 203 aaKnown RBP11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 B3GALT6Q96L58 329 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 ANO3Q9BYT9 981 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 UBXN6Q9BZV1 441 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 SLC13A1Q9BZW2 595 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 FHDC1Q9C0D6 1143 aaPredicted RBP11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 CD248Q9HCU0 757 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 MLXIPLQ9NP71 852 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 KRCC1Q9NPI7 259 aaPredicted RBP11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 PLA2G4AP47712 749 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 ANXA11P50995 505 aaKnown RBP11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 PUDPQ08623 228 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 TNFAIP1Q13829 316 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 ARHGAP27Q6ZUM4 889 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 RCOR2Q8IZ40 523 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 RAB42Q8N4Z0 105 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 METTL13Q8N6R0 699 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 FAM162AQ96A26 154 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 IFT43Q96FT9 208 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 SUCLG2Q96I99 432 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 RNPC3Q96LT9 517 aaKnown RBP11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 PAIP1Q9H074 479 aaKnown RBP11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 TLR7Q9NYK1 1049 aaKnown RBP11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 CCDC195A0A1B0GUA6 201 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 TESPA1A2RU30 521 aaPredicted RBP11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 PSMD14O00487 310 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 RXRGP48443 463 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 RGS21Q2M5E4 152 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 LRRC31Q6UY01 552 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 ZFP42Q96MM3 310 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 RNPEPQ9H4A4 650 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 ERAP1Q9NZ08 941 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 WDR19Q8NEZ3 1342 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 PCDH11YQ9BZA8 1340 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 NPATQ14207 1427 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 SYNJ2BP-COX16A0A087WUM0 186 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 POTEFA5A3E0 1075 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 FOXO3O43524 673 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 PTPN4P29074 926 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 RAB15P59190 212 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 KRT17Q04695 432 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 CHRNB3Q05901 458 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 TRIM25Q14258 630 aaKnown RBP11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 P3H1Q32P28 736 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 FAM47CQ5HY64 1035 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 B3GNT6Q6ZMB0 384 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 SCUBE1Q8IWY4 988 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 GUF1Q8N442 669 aaKnown RBP11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 SETD9Q8NE22 299 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 ASAP3Q8TDY4 903 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 SH3TC2Q8TF17 1288 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 ASZ1Q8WWH4 475 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 E2F7Q96AV8 911 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 PPP1R14BQ96C90 147 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 MANSC1Q9H8J5 431 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 PLGRKTQ9HBL7 147 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 NGRNQ9NPE2 291 aaKnown RBP11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 COX16Q9P0S2 106 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 ZNF219Q9P2Y4 722 aaPredicted RBP11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 C15orf41Q9Y2V0 281 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 PCDHA1Q9Y5I3 950 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 TMEM120BA0PK00 339 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 SRRM3A6NNA2 597 aaPredicted RBP11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 UFL1O94874 794 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 SDC4P31431 198 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 PEX5P50542 639 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 ZNF200P98182 395 aaPredicted RBP11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 SLC39A6Q13433 755 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 OASLQ15646 514 aaKnown RBP11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 ZNF667Q5HYK9 610 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 MZT2BQ6NZ67 158 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 HEATR4Q86WZ0 1026 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 CPXCR1Q8N123 301 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 CCDC126Q96EE4 140 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 EGFL8Q99944 293 aa11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 MMTAG2Q9BU76 263 aaKnown RBP11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 C6orf203Q9P0P8 240 aaPredicted RBP11.79□□□□□ -0.52
LIMCH1-208ENST00000508501 TPD52L2O43399 206 aaKnown RBP11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 BAIAP3O94812 1187 aa11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 ARIH2O95376 493 aa11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 NSUN2Q08J23 767 aaKnown RBP eCLIP11.78□□□□□ -0.52
LIMCH1-208ENST00000508501 SLC10A5Q5PT55 438 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms