RNA–Protein interactions for RNA: ENST00000508342.5

NEDD4-208, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,235 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-208ENST00000508342 SYCP2LQ5T4T6 812 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 PDE12Q6L8Q7 609 aaKnown RBP3.17□□□□□ -1.9
NEDD4-208ENST00000508342 Q7L0L9 218 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 OTOP3Q7RTS5 596 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 TBC1D10CQ8IV04 446 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 SIX6OS1Q8N1H7 587 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 NEDD1Q8NHV4 660 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 RIN2Q8WYP3 895 aaPredicted RBP3.17□□□□□ -1.9
NEDD4-208ENST00000508342 GPR20Q99678 358 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 UNC45AQ9H3U1 944 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 SLC32A1Q9H598 525 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 TFIP11Q9UBB9 837 aaKnown RBP3.17□□□□□ -1.9
NEDD4-208ENST00000508342 MAD2L2Q9UI95 211 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 PCDHB4Q9Y5E5 795 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 MYH9P35579 1960 aaKnown RBP3.17□□□□□ -1.9
NEDD4-208ENST00000508342 BIN1O00499 593 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 EXOC3O60645 756 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 CD4P01730 458 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 MBL2P11226 248 aaPredicted RBP3.17□□□□□ -1.9
NEDD4-208ENST00000508342 CSF2RAP15509 400 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 FGFR4P22455 802 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 VAC14Q08AM6 782 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 GRSF1Q12849 480 aaKnown RBP eCLIP3.17□□□□□ -1.9
NEDD4-208ENST00000508342 EIF2B5Q13144 721 aaKnown RBP3.17□□□□□ -1.9
NEDD4-208ENST00000508342 KCNB1Q14721 858 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 SPECC1LQ69YQ0 1117 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 GDF6Q6KF10 455 aaPredicted RBP3.17□□□□□ -1.9
NEDD4-208ENST00000508342 ZNF365Q70YC5 407 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 MTSS1LQ765P7 747 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 ZNF589Q86UQ0 364 aaPredicted RBP3.17□□□□□ -1.9
NEDD4-208ENST00000508342 DCP1BQ8IZD4 617 aaKnown RBP3.17□□□□□ -1.9
NEDD4-208ENST00000508342 RAD9AQ99638 391 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 LXNQ9BS40 222 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 PCIF1Q9H4Z3 704 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 PDGFCQ9NRA1 345 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 ABI2Q9NYB9 513 aaPredicted RBP3.17□□□□□ -1.9
NEDD4-208ENST00000508342 HDAC6Q9UBN7 1215 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 CTNND2Q9UQB3 1225 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 K7ELQ4 463 aaPredicted RBP3.16□□□□□ -1.9
NEDD4-208ENST00000508342 SPOPO43791 374 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 IGHDP01880 384 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 FGFR2P21802 821 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 FNDC3BQ53EP0 1204 aaKnown RBP3.16□□□□□ -1.9
NEDD4-208ENST00000508342 NOMO2Q5JPE7 1267 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 MFSD5Q6N075 450 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 FOXR1Q6PIV2 292 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 METTL7BQ6UX53 244 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 ENAHQ8N8S7 591 aaPredicted RBP3.16□□□□□ -1.9
NEDD4-208ENST00000508342 TRIML1Q8N9V2 468 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 COLGALT1Q8NBJ5 622 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 EHBP1Q8NDI1 1231 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 C7orf43Q8WVR3 580 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 DHX38Q92620 1227 aaKnown RBP3.16□□□□□ -1.9
NEDD4-208ENST00000508342 UROC1Q96N76 676 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 CDX2Q99626 313 aaPredicted RBP3.16□□□□□ -1.9
NEDD4-208ENST00000508342 EIF2AK1Q9BQI3 630 aaKnown RBP3.16□□□□□ -1.9
NEDD4-208ENST00000508342 NFKBIZQ9BYH8 718 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 MRPS23Q9Y3D9 190 aaKnown RBP3.16□□□□□ -1.9
NEDD4-208ENST00000508342 GAKO14976 1311 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 TRAV19A0A0A6YYK7 116 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 ZNF197O14709 1029 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 CETN3O15182 167 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 RHOBTB1O94844 696 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 THP07101 528 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 P4HBP07237 508 aaKnown RBP3.16□□□□□ -1.9
NEDD4-208ENST00000508342 KLRC1P26715 233 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 SOX11P35716 441 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 SMAD3P84022 425 aaKnown RBP3.16□□□□□ -1.9
NEDD4-208ENST00000508342 CAMK4Q16566 473 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 SLC45A4Q5BKX6 768 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 ISM2Q6H9L7 571 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 TAF2Q6P1X5 1199 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 SCYL2Q6P3W7 929 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 TTC23LQ6PF05 361 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 ADGRA1Q86SQ6 560 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 CCDC110Q8TBZ0 833 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 OTUD7AQ8TE49 926 aaPredicted RBP3.16□□□□□ -1.9
NEDD4-208ENST00000508342 FAM149B1Q96BN6 582 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 FAM47DPA6NHR8 397 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 FAM25EA8MYX2 175 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 MSL3P1P0C860 447 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 GAP43P17677 238 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 WEE1P30291 646 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 CSTF2P33240 577 aaKnown RBP eCLIP3.16□□□□□ -1.9
NEDD4-208ENST00000508342 MAGEA8P43361 318 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 CSTF1Q05048 431 aaKnown RBP3.16□□□□□ -1.9
NEDD4-208ENST00000508342 PPP1R7Q15435 360 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 SHHQ15465 462 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 SGO2Q562F6 1265 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 SLC51AQ86UW1 340 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 NT5DC4Q86YG4 428 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 HERC6Q8IVU3 1022 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 TMEM192Q8IY95 271 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 TEX19Q8NA77 164 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 USP38Q8NB14 1042 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 GOLGA5Q8TBA6 731 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 ZNF560Q96MR9 790 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 AGAP3Q96P47 875 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 CTAGE1Q96RT6 745 aa3.16□□□□□ -1.9
NEDD4-208ENST00000508342 ARHGAP9Q9BRR9 750 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms