RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 WNT7BP56706 349 aa10.57□□□□□ -0.72
CLIP1-204ENST00000501271 PRKCEQ02156 737 aa10.57□□□□□ -0.72
CLIP1-204ENST00000501271 CLEC16AQ2KHT3 1053 aa10.57□□□□□ -0.72
CLIP1-204ENST00000501271 NBPF12Q5TAG4 269 aaPredicted RBP10.57□□□□□ -0.72
CLIP1-204ENST00000501271 LMBRD2Q68DH5 695 aaPredicted RBP10.57□□□□□ -0.72
CLIP1-204ENST00000501271 ACAD10Q6JQN1 1059 aa10.57□□□□□ -0.72
CLIP1-204ENST00000501271 OTUD6AQ7L8S5 288 aa10.57□□□□□ -0.72
CLIP1-204ENST00000501271 SAMD7Q7Z3H4 446 aa10.57□□□□□ -0.72
CLIP1-204ENST00000501271 PSPC1Q8WXF1 523 aaKnown RBP10.57□□□□□ -0.72
CLIP1-204ENST00000501271 ATP6V0A1Q93050 837 aa10.57□□□□□ -0.72
CLIP1-204ENST00000501271 C17orf75Q9HAS0 396 aa10.57□□□□□ -0.72
CLIP1-204ENST00000501271 PDLIM7Q9NR12 457 aa10.57□□□□□ -0.72
CLIP1-204ENST00000501271 GINM1Q9NU53 330 aa10.57□□□□□ -0.72
CLIP1-204ENST00000501271 FZD1Q9UP38 647 aa10.57□□□□□ -0.72
CLIP1-204ENST00000501271 PTPN22Q9Y2R2 807 aa10.57□□□□□ -0.72
CLIP1-204ENST00000501271 SIP14410 1827 aa10.57□□□□□ -0.72
CLIP1-204ENST00000501271 PODXLO00592 558 aa10.56□□□□□ -0.72
CLIP1-204ENST00000501271 BACE1P56817 501 aa10.56□□□□□ -0.72
CLIP1-204ENST00000501271 RWDD2BP57060 319 aa10.56□□□□□ -0.72
CLIP1-204ENST00000501271 TTC31Q49AM3 519 aaPredicted RBP10.56□□□□□ -0.72
CLIP1-204ENST00000501271 XRRA1Q6P2D8 792 aa10.56□□□□□ -0.72
CLIP1-204ENST00000501271 CCDC105Q8IYK2 499 aa10.56□□□□□ -0.72
CLIP1-204ENST00000501271 MICALL1Q8N3F8 863 aa10.56□□□□□ -0.72
CLIP1-204ENST00000501271 ZNF516Q92618 1163 aa10.56□□□□□ -0.72
CLIP1-204ENST00000501271 ZKSCAN4Q969J2 545 aaPredicted RBP10.56□□□□□ -0.72
CLIP1-204ENST00000501271 CYFIP2Q96F07 1278 aa10.56□□□□□ -0.72
CLIP1-204ENST00000501271 BICD1Q96G01 975 aa10.56□□□□□ -0.72
CLIP1-204ENST00000501271 TRIM7Q9C029 511 aa10.56□□□□□ -0.72
CLIP1-204ENST00000501271 JPH1Q9HDC5 661 aaPredicted RBP10.56□□□□□ -0.72
CLIP1-204ENST00000501271 HACL1Q9UJ83 578 aa10.56□□□□□ -0.72
CLIP1-204ENST00000501271 PNMA2Q9UL42 364 aa10.56□□□□□ -0.72
CLIP1-204ENST00000501271 ZNF214Q9UL59 606 aaPredicted RBP10.56□□□□□ -0.72
CLIP1-204ENST00000501271 BRCA1P38398 1863 aaKnown RBP10.56□□□□□ -0.72
CLIP1-204ENST00000501271 CLDN3O15551 220 aa10.56□□□□□ -0.72
CLIP1-204ENST00000501271 DGAT1O75907 488 aa10.56□□□□□ -0.72
CLIP1-204ENST00000501271 PAEPP09466 180 aa10.56□□□□□ -0.72
CLIP1-204ENST00000501271 UNGP13051 313 aaPredicted RBP10.56□□□□□ -0.72
CLIP1-204ENST00000501271 GARTP22102 1010 aa10.56□□□□□ -0.72
CLIP1-204ENST00000501271 GCNT1Q02742 428 aa10.56□□□□□ -0.72
CLIP1-204ENST00000501271 MKRN4PQ13434 485 aaPredicted RBP10.56□□□□□ -0.72
CLIP1-204ENST00000501271 SLC29A2Q14542 456 aa10.56□□□□□ -0.72
CLIP1-204ENST00000501271 QPCTQ16769 361 aa10.56□□□□□ -0.72
CLIP1-204ENST00000501271 BRDTQ58F21 947 aaPredicted RBP10.56□□□□□ -0.72
CLIP1-204ENST00000501271 DENND2CQ68D51 928 aa10.56□□□□□ -0.72
CLIP1-204ENST00000501271 LLGL2Q6P1M3 1020 aa10.56□□□□□ -0.72
CLIP1-204ENST00000501271 C15orf39Q6ZRI6 1047 aa10.56□□□□□ -0.72
CLIP1-204ENST00000501271 PAXIP1Q6ZW49 1069 aaPredicted RBP10.56□□□□□ -0.72
CLIP1-204ENST00000501271 HOOK3Q86VS8 718 aa10.56□□□□□ -0.72
CLIP1-204ENST00000501271 C12orf50Q8NA57 414 aaPredicted RBP10.56□□□□□ -0.72
CLIP1-204ENST00000501271 JDP2Q8WYK2 163 aa10.56□□□□□ -0.72
CLIP1-204ENST00000501271 RAPGEF5Q92565 580 aa10.56□□□□□ -0.72
CLIP1-204ENST00000501271 POLR3FQ9H1D9 316 aaPredicted RBP10.56□□□□□ -0.72
CLIP1-204ENST00000501271 TAOK3Q9H2K8 898 aa10.56□□□□□ -0.72
CLIP1-204ENST00000501271 SEMA4AQ9H3S1 761 aa10.56□□□□□ -0.72
CLIP1-204ENST00000501271 CYP26B1Q9NR63 512 aa10.56□□□□□ -0.72
CLIP1-204ENST00000501271 ARHGAP28Q9P2N2 729 aa10.56□□□□□ -0.72
CLIP1-204ENST00000501271 ANAPC7Q9UJX3 599 aa10.56□□□□□ -0.72
CLIP1-204ENST00000501271 GMNCA6NCL1 334 aa10.55□□□□□ -0.72
CLIP1-204ENST00000501271 MEFVO15553 781 aaPredicted RBP10.55□□□□□ -0.72
CLIP1-204ENST00000501271 PSAPP07602 524 aa10.55□□□□□ -0.72
CLIP1-204ENST00000501271 FDX1P10109 184 aa10.55□□□□□ -0.72
CLIP1-204ENST00000501271 FGFR4P22455 802 aa10.55□□□□□ -0.72
CLIP1-204ENST00000501271 ACTR2P61160 394 aa10.55□□□□□ -0.72
CLIP1-204ENST00000501271 C2CD6Q53TS8 623 aa10.55□□□□□ -0.72
CLIP1-204ENST00000501271 PHLDB2Q86SQ0 1253 aa10.55□□□□□ -0.72
CLIP1-204ENST00000501271 USP37Q86T82 979 aa10.55□□□□□ -0.72
CLIP1-204ENST00000501271 SPATS2Q86XZ4 545 aaKnown RBP10.55□□□□□ -0.72
CLIP1-204ENST00000501271 MICALL2Q8IY33 904 aa10.55□□□□□ -0.72
CLIP1-204ENST00000501271 SCYL3Q8IZE3 742 aa10.55□□□□□ -0.72
CLIP1-204ENST00000501271 MCPH1Q8NEM0 835 aa10.55□□□□□ -0.72
CLIP1-204ENST00000501271 MDM1Q8TC05 714 aa10.55□□□□□ -0.72
CLIP1-204ENST00000501271 NSUN6Q8TEA1 469 aaKnown RBP10.55□□□□□ -0.72
CLIP1-204ENST00000501271 KAT2BQ92831 832 aa10.55□□□□□ -0.72
CLIP1-204ENST00000501271 ATP6V0A4Q9HBG4 840 aa10.55□□□□□ -0.72
CLIP1-204ENST00000501271 C1orf112Q9NSG2 853 aa10.55□□□□□ -0.72
CLIP1-204ENST00000501271 SLC9A2Q9UBY0 812 aa10.55□□□□□ -0.72
CLIP1-204ENST00000501271 MTUS1Q9ULD2 1270 aa10.55□□□□□ -0.72
CLIP1-204ENST00000501271 LOC285556D6RIA3 1793 aa10.55□□□□□ -0.72
CLIP1-204ENST00000501271 PTPRJQ12913 1337 aa10.55□□□□□ -0.72
CLIP1-204ENST00000501271 MROH7Q68CQ1 1323 aa10.55□□□□□ -0.72
CLIP1-204ENST00000501271 MYPNQ86TC9 1320 aa10.55□□□□□ -0.72
CLIP1-204ENST00000501271 SMIM23A6NLE4 172 aa10.55□□□□□ -0.72
CLIP1-204ENST00000501271 MAFGO15525 162 aa10.55□□□□□ -0.72
CLIP1-204ENST00000501271 MAPK4P31152 587 aa10.55□□□□□ -0.72
CLIP1-204ENST00000501271 FNTAP49354 379 aa10.55□□□□□ -0.72
CLIP1-204ENST00000501271 HMGCS2P54868 508 aa10.55□□□□□ -0.72
CLIP1-204ENST00000501271 RTP1P59025 263 aa10.55□□□□□ -0.72
CLIP1-204ENST00000501271 TMEM132BQ14DG7 1078 aa10.55□□□□□ -0.72
CLIP1-204ENST00000501271 MTERF2Q49AM1 385 aa10.55□□□□□ -0.72
CLIP1-204ENST00000501271 ZNF526Q8TF50 670 aaPredicted RBP10.55□□□□□ -0.72
CLIP1-204ENST00000501271 CPA5Q8WXQ8 436 aa10.55□□□□□ -0.72
CLIP1-204ENST00000501271 ART4Q93070 314 aa10.55□□□□□ -0.72
CLIP1-204ENST00000501271 HERPUD2Q9BSE4 406 aa10.55□□□□□ -0.72
CLIP1-204ENST00000501271 A1CFQ9NQ94 594 aaKnown RBP10.55□□□□□ -0.72
CLIP1-204ENST00000501271 MTRF1LQ9UGC7 380 aaKnown RBP10.55□□□□□ -0.72
CLIP1-204ENST00000501271 NFASCO94856 1347 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 PASKQ96RG2 1323 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 TP73O15350 636 aa10.54□□□□□ -0.72
CLIP1-204ENST00000501271 ZC3H11AO75152 810 aaKnown RBP eCLIP10.54□□□□□ -0.72
CLIP1-204ENST00000501271 KIAA0754O94854 1291 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms