RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 URGCPQ8TCY9 931 aa9□□□□□ -0.97
USP54-215ENST00000497106 MMS19Q96T76 1030 aa9□□□□□ -0.97
USP54-215ENST00000497106 ACO2Q99798 780 aaKnown RBP9□□□□□ -0.97
USP54-215ENST00000497106 NIF3L1Q9GZT8 377 aa9□□□□□ -0.97
USP54-215ENST00000497106 SNX25Q9H3E2 840 aa9□□□□□ -0.97
USP54-215ENST00000497106 PLEKHA5Q9HAU0 1116 aa9□□□□□ -0.97
USP54-215ENST00000497106 THAP12O43422 761 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 LRRN2O75325 713 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 GLIS3Q8NEA6 775 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 ACRBPQ8NEB7 543 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 LRRC15Q8TF66 581 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 TMEM174Q8WUU8 243 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 KIF12Q96FN5 646 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 HSD3B7Q9H2F3 369 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 SRRDQ9UH36 339 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 JRKLQ9Y4A0 524 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 FHOD1Q9Y613 1164 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 PASKQ96RG2 1323 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 ZMYM2Q9UBW7 1377 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 C22orf31O95567 290 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 CHRM1P11229 460 aaPredicted RBP8.99□□□□□ -0.97
USP54-215ENST00000497106 SLC9A1P19634 815 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 HNRNPH3P31942 346 aaKnown RBP8.99□□□□□ -0.97
USP54-215ENST00000497106 OSTNP61366 133 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 FAM187BQ17R55 369 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 CDCA2Q69YH5 1023 aaPredicted RBP8.99□□□□□ -0.97
USP54-215ENST00000497106 TSHZ1Q6ZSZ6 1077 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 TOGARAM2Q6ZUX3 1019 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 PEX26Q7Z412 305 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 FAXDC2Q96IV6 333 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 PPP1R16BQ96T49 567 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 AGPAT1Q99943 283 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 INTS13Q9NVM9 706 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 ITGA11Q9UKX5 1188 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 MTUS1Q9ULD2 1270 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 STRIP2Q9ULQ0 834 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 DERAQ9Y315 318 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 SAR1BQ9Y6B6 198 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 CNTNAP2Q9UHC6 1331 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 CAND2O75155 1236 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 CALB1P05937 261 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 PRKAR2AP13861 404 aaKnown RBP8.99□□□□□ -0.97
USP54-215ENST00000497106 IBSPP21815 317 aaPredicted RBP8.99□□□□□ -0.97
USP54-215ENST00000497106 CRYBB1P53674 252 aaPredicted RBP8.99□□□□□ -0.97
USP54-215ENST00000497106 TMX1Q9H3N1 280 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 CYP3A43Q9HB55 503 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 RASAL2Q9UJF2 1139 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 MYH7BA7E2Y1 1941 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 MOXD2PA6NHM9 499 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 ANKRD63C9JTQ0 380 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 SPOPO43791 374 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 MCL1Q07820 350 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 ABI1Q8IZP0 508 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 TMEM35BQ8NCS4 154 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 APOL6Q9BWW8 343 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 AGPAT5Q9NUQ2 364 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 LRFN2Q9ULH4 789 aa8.99□□□□□ -0.97
USP54-215ENST00000497106 RASSF10A6NK89 507 aa8.98□□□□□ -0.97
USP54-215ENST00000497106 PAK2Q13177 524 aa8.98□□□□□ -0.97
USP54-215ENST00000497106 PTPN21Q16825 1174 aa8.98□□□□□ -0.97
USP54-215ENST00000497106 USP38Q8NB14 1042 aa8.98□□□□□ -0.97
USP54-215ENST00000497106 PTPN18Q99952 460 aa8.98□□□□□ -0.97
USP54-215ENST00000497106 TMEM117Q9H0C3 514 aa8.98□□□□□ -0.97
USP54-215ENST00000497106 IFT122Q9HBG6 1241 aa8.98□□□□□ -0.97
USP54-215ENST00000497106 CHST12Q9NRB3 414 aa8.98□□□□□ -0.97
USP54-215ENST00000497106 SAGE1Q9NXZ1 904 aa8.98□□□□□ -0.97
USP54-215ENST00000497106 F2P00734 622 aa8.98□□□□□ -0.97
USP54-215ENST00000497106 VTNP04004 478 aa8.98□□□□□ -0.97
USP54-215ENST00000497106 STAG3L1P0CL83 205 aa8.98□□□□□ -0.97
USP54-215ENST00000497106 SOX10P56693 466 aa8.98□□□□□ -0.97
USP54-215ENST00000497106 GJA9P57773 515 aa8.98□□□□□ -0.97
USP54-215ENST00000497106 NOP14P78316 857 aaKnown RBP8.98□□□□□ -0.97
USP54-215ENST00000497106 TAP1Q03518 808 aa8.98□□□□□ -0.97
USP54-215ENST00000497106 CFAP221Q4G0U5 840 aa8.98□□□□□ -0.97
USP54-215ENST00000497106 KCNN1Q92952 543 aa8.98□□□□□ -0.97
USP54-215ENST00000497106 PCDHB2Q9Y5E7 798 aa8.98□□□□□ -0.97
USP54-215ENST00000497106 A0A0B4J269 797 aa8.98□□□□□ -0.97
USP54-215ENST00000497106 NDC80O14777 642 aa8.98□□□□□ -0.97
USP54-215ENST00000497106 RTN2O75298 545 aa8.98□□□□□ -0.97
USP54-215ENST00000497106 NPTXRO95502 500 aa8.98□□□□□ -0.97
USP54-215ENST00000497106 ITGA4P13612 1032 aa8.98□□□□□ -0.97
USP54-215ENST00000497106 MRPS6P82932 125 aaKnown RBP8.98□□□□□ -0.97
USP54-215ENST00000497106 NFX1Q12986 1120 aaKnown RBP8.98□□□□□ -0.97
USP54-215ENST00000497106 NAB2Q15742 525 aa8.98□□□□□ -0.97
USP54-215ENST00000497106 TEX35Q5T0J7 233 aa8.98□□□□□ -0.97
USP54-215ENST00000497106 C17orf53Q8N3J3 647 aaPredicted RBP8.98□□□□□ -0.97
USP54-215ENST00000497106 MYRIPQ8NFW9 859 aa8.98□□□□□ -0.97
USP54-215ENST00000497106 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.98□□□□□ -0.97
USP54-215ENST00000497106 BSNDQ8WZ55 320 aa8.98□□□□□ -0.97
USP54-215ENST00000497106 PDE11AQ9HCR9 933 aa8.98□□□□□ -0.97
USP54-215ENST00000497106 STARD7Q9NQZ5 370 aa8.98□□□□□ -0.97
USP54-215ENST00000497106 ADAMTS1Q9UHI8 967 aa8.98□□□□□ -0.97
USP54-215ENST00000497106 KIAA1257Q9ULG3 409 aa8.98□□□□□ -0.97
USP54-215ENST00000497106 LRRIQ3A6PVS8 624 aaPredicted RBP8.97□□□□□ -0.97
USP54-215ENST00000497106 CAPN2P17655 700 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 PRKCIP41743 596 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 CUL2Q13617 745 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 SV2CQ496J9 727 aa8.97□□□□□ -0.97
USP54-215ENST00000497106 E4F1Q66K89 784 aaPredicted RBP8.97□□□□□ -0.97
USP54-215ENST00000497106 DCUN1D2Q6PH85 259 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms