RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 C5AR1P21730 350 aa7.62□□□□□ -1.19
SF3B1-212ENST00000496458 NR4A1P22736 598 aa7.62□□□□□ -1.19
SF3B1-212ENST00000496458 PTGS2P35354 604 aa7.62□□□□□ -1.19
SF3B1-212ENST00000496458 RNASE9P60153 205 aaKnown RBP7.62□□□□□ -1.19
SF3B1-212ENST00000496458 NEU4Q8WWR8 484 aaPredicted RBP7.62□□□□□ -1.19
SF3B1-212ENST00000496458 PHACTR3Q96KR7 559 aa7.62□□□□□ -1.19
SF3B1-212ENST00000496458 DCLRE1CQ96SD1 692 aaKnown RBP7.62□□□□□ -1.19
SF3B1-212ENST00000496458 C7orf25Q9BPX7 421 aa7.62□□□□□ -1.19
SF3B1-212ENST00000496458 MRI1Q9BV20 369 aa7.62□□□□□ -1.19
SF3B1-212ENST00000496458 PCED1AQ9H1Q7 454 aa7.62□□□□□ -1.19
SF3B1-212ENST00000496458 FAM189BP81408 668 aa7.61□□□□□ -1.19
SF3B1-212ENST00000496458 FHL2Q14192 279 aa7.61□□□□□ -1.19
SF3B1-212ENST00000496458 PTPN21Q16825 1174 aa7.61□□□□□ -1.19
SF3B1-212ENST00000496458 RRP12Q5JTH9 1297 aaKnown RBP7.61□□□□□ -1.19
SF3B1-212ENST00000496458 GDF7Q7Z4P5 450 aa7.61□□□□□ -1.19
SF3B1-212ENST00000496458 PNMA8AQ86V59 439 aaPredicted RBP7.61□□□□□ -1.19
SF3B1-212ENST00000496458 SYNE4Q8N205 404 aa7.61□□□□□ -1.19
SF3B1-212ENST00000496458 HAS1Q92839 578 aa7.61□□□□□ -1.19
SF3B1-212ENST00000496458 GPATCH3Q96I76 525 aa7.61□□□□□ -1.19
SF3B1-212ENST00000496458 SORCS2Q96PQ0 1159 aa7.61□□□□□ -1.19
SF3B1-212ENST00000496458 MANSC1Q9H8J5 431 aa7.61□□□□□ -1.19
SF3B1-212ENST00000496458 SAP30BPQ9UHR5 308 aaKnown RBP7.61□□□□□ -1.19
SF3B1-212ENST00000496458 CHST2Q9Y4C5 530 aa7.61□□□□□ -1.19
SF3B1-212ENST00000496458 MRFAP1Q9Y605 127 aa7.61□□□□□ -1.19
SF3B1-212ENST00000496458 ACTL7AQ9Y615 435 aa7.61□□□□□ -1.19
SF3B1-212ENST00000496458 PNPLA7Q6ZV29 1317 aa7.6□□□□□ -1.19
SF3B1-212ENST00000496458 GPR32O75388 356 aa7.6□□□□□ -1.19
SF3B1-212ENST00000496458 ATP5JP18859 108 aa7.6□□□□□ -1.19
SF3B1-212ENST00000496458 PCSK1P29120 753 aa7.6□□□□□ -1.19
SF3B1-212ENST00000496458 CHN2P52757 468 aa7.6□□□□□ -1.19
SF3B1-212ENST00000496458 RHOT1Q8IXI2 618 aa7.6□□□□□ -1.19
SF3B1-212ENST00000496458 FAM177A1Q8N128 213 aaPredicted RBP7.6□□□□□ -1.19
SF3B1-212ENST00000496458 CASKIN2Q8WXE0 1202 aa7.6□□□□□ -1.19
SF3B1-212ENST00000496458 TEKT5Q96M29 485 aa7.6□□□□□ -1.19
SF3B1-212ENST00000496458 SLC46A2Q9BY10 475 aa7.6□□□□□ -1.19
SF3B1-212ENST00000496458 KRTAP4-5Q9BYR2 181 aa7.6□□□□□ -1.19
SF3B1-212ENST00000496458 RUVBL1Q9Y265 456 aaKnown RBP7.6□□□□□ -1.19
SF3B1-212ENST00000496458 TNKSO95271 1327 aa7.59□□□□□ -1.19
SF3B1-212ENST00000496458 ZNF185O15231 689 aa7.59□□□□□ -1.19
SF3B1-212ENST00000496458 AMY1AP04745 511 aa7.59□□□□□ -1.19
SF3B1-212ENST00000496458 ZSCAN20P17040 1043 aaPredicted RBP7.59□□□□□ -1.19
SF3B1-212ENST00000496458 IBSPP21815 317 aaPredicted RBP7.59□□□□□ -1.19
SF3B1-212ENST00000496458 SLC16A1P53985 500 aa7.59□□□□□ -1.19
SF3B1-212ENST00000496458 ZGPATQ8N5A5 531 aaKnown RBP7.59□□□□□ -1.19
SF3B1-212ENST00000496458 LARP4BQ92615 738 aaKnown RBP7.59□□□□□ -1.19
SF3B1-212ENST00000496458 RAB24Q969Q5 203 aa7.59□□□□□ -1.19
SF3B1-212ENST00000496458 CYFIP2Q96F07 1278 aa7.59□□□□□ -1.19
SF3B1-212ENST00000496458 TEX101Q9BY14 249 aa7.59□□□□□ -1.19
SF3B1-212ENST00000496458 ASPSCR1Q9BZE9 553 aa7.59□□□□□ -1.19
SF3B1-212ENST00000496458 HOMER2Q9NSB8 354 aa7.59□□□□□ -1.19
SF3B1-212ENST00000496458 DRGXA6NNA5 263 aa7.58□□□□□ -1.2
SF3B1-212ENST00000496458 DIRC3C9JPN6 131 aa7.58□□□□□ -1.2
SF3B1-212ENST00000496458 NCR1O76036 304 aa7.58□□□□□ -1.2
SF3B1-212ENST00000496458 ZFP36P26651 326 aaKnown RBP7.58□□□□□ -1.2
SF3B1-212ENST00000496458 KIF23Q02241 960 aaPredicted RBP7.58□□□□□ -1.2
SF3B1-212ENST00000496458 PDCD4Q53EL6 469 aaKnown RBP7.58□□□□□ -1.2
SF3B1-212ENST00000496458 FAM102AQ5T9C2 384 aaPredicted RBP7.58□□□□□ -1.2
SF3B1-212ENST00000496458 ZNF529Q6P280 563 aa7.58□□□□□ -1.2
SF3B1-212ENST00000496458 LRRC55Q6ZSA7 311 aa7.58□□□□□ -1.2
SF3B1-212ENST00000496458 MIGA2Q7L4E1 593 aa7.58□□□□□ -1.2
SF3B1-212ENST00000496458 MRGPREQ86SM8 312 aa7.58□□□□□ -1.2
SF3B1-212ENST00000496458 DRC7Q8IY82 874 aa7.58□□□□□ -1.2
SF3B1-212ENST00000496458 LENG9Q96B70 501 aa7.58□□□□□ -1.2
SF3B1-212ENST00000496458 NEU1Q99519 415 aa7.58□□□□□ -1.2
SF3B1-212ENST00000496458 MYOCQ99972 504 aa7.58□□□□□ -1.2
SF3B1-212ENST00000496458 FZD1Q9UP38 647 aa7.58□□□□□ -1.2
SF3B1-212ENST00000496458 USP15Q9Y4E8 981 aaPredicted RBP7.58□□□□□ -1.2
SF3B1-212ENST00000496458 MYBBP1AQ9BQG0 1328 aaKnown RBP7.57□□□□□ -1.2
SF3B1-212ENST00000496458 RNASET2O00584 256 aaKnown RBP7.57□□□□□ -1.2
SF3B1-212ENST00000496458 TEX33O43247 280 aa7.57□□□□□ -1.2
SF3B1-212ENST00000496458 ITGB1P05556 798 aa7.57□□□□□ -1.2
SF3B1-212ENST00000496458 LAG3P18627 525 aa7.57□□□□□ -1.2
SF3B1-212ENST00000496458 WASP42768 502 aa7.57□□□□□ -1.2
SF3B1-212ENST00000496458 KRT85P78386 507 aa7.57□□□□□ -1.2
SF3B1-212ENST00000496458 MTM1Q13496 603 aa7.57□□□□□ -1.2
SF3B1-212ENST00000496458 TIGD2Q4W5G0 525 aa7.57□□□□□ -1.2
SF3B1-212ENST00000496458 EFCAB2Q5VUJ9 269 aa7.57□□□□□ -1.2
SF3B1-212ENST00000496458 OTUD7BQ6GQQ9 843 aa7.57□□□□□ -1.2
SF3B1-212ENST00000496458 MED25Q71SY5 747 aa7.57□□□□□ -1.2
SF3B1-212ENST00000496458 RHOUQ7L0Q8 258 aa7.57□□□□□ -1.2
SF3B1-212ENST00000496458 PLXDC1Q8IUK5 500 aa7.57□□□□□ -1.2
SF3B1-212ENST00000496458 MLST8Q9BVC4 326 aa7.57□□□□□ -1.2
SF3B1-212ENST00000496458 MRIQ9BWK5 157 aa7.57□□□□□ -1.2
SF3B1-212ENST00000496458 BRINP2Q9C0B6 783 aa7.57□□□□□ -1.2
SF3B1-212ENST00000496458 AKIP1Q9NQ31 210 aa7.57□□□□□ -1.2
SF3B1-212ENST00000496458 SLC23A1Q9UHI7 598 aa7.57□□□□□ -1.2
SF3B1-212ENST00000496458 NOP58Q9Y2X3 529 aaKnown RBP7.57□□□□□ -1.2
SF3B1-212ENST00000496458 PCDHA13Q9Y5I0 950 aa7.57□□□□□ -1.2
SF3B1-212ENST00000496458 ABHD16AO95870 558 aa7.56□□□□□ -1.2
SF3B1-212ENST00000496458 POMCP01189 267 aa7.56□□□□□ -1.2
SF3B1-212ENST00000496458 SPATA31D3P0C874 917 aa7.56□□□□□ -1.2
SF3B1-212ENST00000496458 DDCP20711 480 aa7.56□□□□□ -1.2
SF3B1-212ENST00000496458 CCND1P24385 295 aa7.56□□□□□ -1.2
SF3B1-212ENST00000496458 ATP8B2P98198 1209 aa7.56□□□□□ -1.2
SF3B1-212ENST00000496458 ODF1Q14990 250 aa7.56□□□□□ -1.2
SF3B1-212ENST00000496458 BRDTQ58F21 947 aaPredicted RBP7.56□□□□□ -1.2
SF3B1-212ENST00000496458 METRNLQ641Q3 311 aa7.56□□□□□ -1.2
SF3B1-212ENST00000496458 KCNV1Q6PIU1 500 aa7.56□□□□□ -1.2
SF3B1-212ENST00000496458 SPATA31D4Q6ZUB0 917 aa7.56□□□□□ -1.2
SF3B1-212ENST00000496458 SEM1Q6ZVN7 128 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms