RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 HAO1Q9UJM8 370 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 SMG5Q9UPR3 1016 aaKnown RBP10.33□□□□□ -0.76
SYNE1-230ENST00000495090 ZNF536O15090 1300 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 COL5A3P25940 1745 aaPredicted RBP10.33□□□□□ -0.76
SYNE1-230ENST00000495090 COL24A1Q17RW2 1714 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 FOCADQ5VW36 1801 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 RSPH10B2B2RC85 870 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 SPOPO43791 374 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 RSPH10BP0C881 870 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 SKIP12755 728 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 ATF2P15336 505 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 KCNJ1P48048 391 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 TUBP50607 506 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 ITGA8P53708 1063 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 GABPAQ06546 454 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 RASA2Q15283 850 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 KYNUQ16719 465 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 MUM1Q2TAK8 710 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 PHLDB3Q6NSJ2 640 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 DRAXINQ8NBI3 349 aaPredicted RBP10.33□□□□□ -0.76
SYNE1-230ENST00000495090 ZNF564Q8TBZ8 553 aaPredicted RBP10.33□□□□□ -0.76
SYNE1-230ENST00000495090 CCDC28BQ9BUN5 200 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 DENND2DQ9H6A0 471 aaPredicted RBP10.33□□□□□ -0.76
SYNE1-230ENST00000495090 GPCPD1Q9NPB8 672 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 SCOCQ9UIL1 159 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 GTF3C4Q9UKN8 822 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 RABGAP1Q9Y3P9 1069 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 C2CD2Q9Y426 696 aa10.33□□□□□ -0.76
SYNE1-230ENST00000495090 TMEM110-MUSTN1A8MSY1 372 aa10.32□□□□□ -0.76
SYNE1-230ENST00000495090 RASA4BC9J798 803 aa10.32□□□□□ -0.76
SYNE1-230ENST00000495090 PDLIM1O00151 329 aa10.32□□□□□ -0.76
SYNE1-230ENST00000495090 C2CD2LO14523 706 aa10.32□□□□□ -0.76
SYNE1-230ENST00000495090 RASA4O43374 803 aa10.32□□□□□ -0.76
SYNE1-230ENST00000495090 CETPP11597 493 aa10.32□□□□□ -0.76
SYNE1-230ENST00000495090 SSR1P43307 286 aaKnown RBP10.32□□□□□ -0.76
SYNE1-230ENST00000495090 RHBDL3P58872 404 aa10.32□□□□□ -0.76
SYNE1-230ENST00000495090 CENPCQ03188 943 aa10.32□□□□□ -0.76
SYNE1-230ENST00000495090 KCNA1Q09470 495 aa10.32□□□□□ -0.76
SYNE1-230ENST00000495090 CETN1Q12798 172 aa10.32□□□□□ -0.76
SYNE1-230ENST00000495090 BFSP1Q12934 665 aa10.32□□□□□ -0.76
SYNE1-230ENST00000495090 DYNC1I2Q13409 638 aaKnown RBP10.32□□□□□ -0.76
SYNE1-230ENST00000495090 ARHGAP44Q17R89 818 aa10.32□□□□□ -0.76
SYNE1-230ENST00000495090 TRABD2AQ86V40 505 aa10.32□□□□□ -0.76
SYNE1-230ENST00000495090 SLF2Q8IX21 1173 aa10.32□□□□□ -0.76
SYNE1-230ENST00000495090 RPUSD2Q8IZ73 545 aaKnown RBP10.32□□□□□ -0.76
SYNE1-230ENST00000495090 LRRC47Q8N1G4 583 aaKnown RBP10.32□□□□□ -0.76
SYNE1-230ENST00000495090 SLC17A8Q8NDX2 589 aa10.32□□□□□ -0.76
SYNE1-230ENST00000495090 LRRC8CQ8TDW0 803 aa10.32□□□□□ -0.76
SYNE1-230ENST00000495090 SLC20A1Q8WUM9 679 aa10.32□□□□□ -0.76
SYNE1-230ENST00000495090 KIFAP3Q92845 792 aa10.32□□□□□ -0.76
SYNE1-230ENST00000495090 DTNBP1Q96EV8 351 aa10.32□□□□□ -0.76
SYNE1-230ENST00000495090 FAM210AQ96ND0 272 aa10.32□□□□□ -0.76
SYNE1-230ENST00000495090 BHMT2Q9H2M3 363 aa10.32□□□□□ -0.76
SYNE1-230ENST00000495090 CYLDQ9NQC7 956 aa10.32□□□□□ -0.76
SYNE1-230ENST00000495090 AGPAT3Q9NRZ7 376 aa10.32□□□□□ -0.76
SYNE1-230ENST00000495090 NMRK1Q9NWW6 199 aa10.32□□□□□ -0.76
SYNE1-230ENST00000495090 ANAPC5Q9UJX4 755 aa10.32□□□□□ -0.76
SYNE1-230ENST00000495090 JAG2Q9Y219 1238 aa10.32□□□□□ -0.76
SYNE1-230ENST00000495090 XIRP1Q702N8 1843 aaKnown RBP10.32□□□□□ -0.76
SYNE1-230ENST00000495090 COL14A1Q05707 1796 aaKnown RBP10.31□□□□□ -0.76
SYNE1-230ENST00000495090 UBAP1LF5GYI3 381 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 MEIS1O00470 390 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 PMM2O15305 246 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 EXOC3O60645 756 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 FAM13AO94988 1023 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 ZWINTO95229 277 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 PDHA1P08559 390 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 CHRNB2P17787 502 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 EPHB2P29323 1055 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 CIITAP33076 1130 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 ARHGAP4P98171 946 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 GSTA3Q16772 222 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 RINT1Q6NUQ1 792 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 C4orf50Q6ZRC1 276 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 FAM47EQ6ZV65 393 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 ATL2Q8NHH9 583 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 LENG9Q96B70 501 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 TIPINQ9BVW5 301 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 MMADHCQ9H3L0 296 aaPredicted RBP10.31□□□□□ -0.76
SYNE1-230ENST00000495090 PARVGQ9HBI0 331 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 SSU72Q9NP77 194 aaKnown RBP10.31□□□□□ -0.76
SYNE1-230ENST00000495090 BTG4Q9NY30 223 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 RGL1Q9NZL6 768 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 KCND2Q9NZV8 630 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 NEU2Q9Y3R4 380 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 GAKO14976 1311 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 A0A1W2PRG0 241 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 LRRN2O75325 713 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 DLATP10515 647 aaKnown RBP10.31□□□□□ -0.76
SYNE1-230ENST00000495090 CDR2Q01850 454 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 DNAJC3Q13217 504 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 GRIK5Q16478 980 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 PPP1R15BQ5SWA1 713 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 MAEAQ7L5Y9 396 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 CCDC89Q8N998 374 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 SUPT20HQ8NEM7 779 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 EPS8L1Q8TE68 723 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 CFAP57Q96MR6 1250 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 TTC25Q96NG3 672 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 FIZ1Q96SL8 496 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms