RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 NPTX2P47972 431 aa11.74□□□□□ -0.53
COL6A3-214ENST00000493608 DSC1Q08554 894 aa11.74□□□□□ -0.53
COL6A3-214ENST00000493608 DHX8Q14562 1220 aaKnown RBP11.74□□□□□ -0.53
COL6A3-214ENST00000493608 SF3A1Q15459 793 aaKnown RBP11.74□□□□□ -0.53
COL6A3-214ENST00000493608 TMEM184AQ6ZMB5 413 aa11.74□□□□□ -0.53
COL6A3-214ENST00000493608 CABP7Q86V35 215 aa11.74□□□□□ -0.53
COL6A3-214ENST00000493608 FEZF2Q8TBJ5 459 aa11.74□□□□□ -0.53
COL6A3-214ENST00000493608 CDK5RAP3Q96JB5 506 aa11.74□□□□□ -0.53
COL6A3-214ENST00000493608 RPGRIP1Q96KN7 1286 aa11.74□□□□□ -0.53
COL6A3-214ENST00000493608 B3GALT6Q96L58 329 aa11.74□□□□□ -0.53
COL6A3-214ENST00000493608 RPS6KC1Q96S38 1066 aa11.74□□□□□ -0.53
COL6A3-214ENST00000493608 MARCH5Q9NX47 278 aa11.74□□□□□ -0.53
COL6A3-214ENST00000493608 PRKAG3Q9UGI9 489 aa11.74□□□□□ -0.53
COL6A3-214ENST00000493608 PI4K2BG5E9Z4 385 aa11.73□□□□□ -0.53
COL6A3-214ENST00000493608 NRG2O14511 850 aaPredicted RBP11.73□□□□□ -0.53
COL6A3-214ENST00000493608 INPPL1O15357 1258 aa11.73□□□□□ -0.53
COL6A3-214ENST00000493608 SLC16A4O15374 487 aa11.73□□□□□ -0.53
COL6A3-214ENST00000493608 RECQL4O94761 1208 aa11.73□□□□□ -0.53
COL6A3-214ENST00000493608 WEE2P0C1S8 567 aa11.73□□□□□ -0.53
COL6A3-214ENST00000493608 PLA2G4BP0C869 781 aa11.73□□□□□ -0.53
COL6A3-214ENST00000493608 SRGAP2BP0DMP2 458 aa11.73□□□□□ -0.53
COL6A3-214ENST00000493608 SYT1P21579 422 aa11.73□□□□□ -0.53
COL6A3-214ENST00000493608 SLC12A3P55017 1021 aa11.73□□□□□ -0.53
COL6A3-214ENST00000493608 CEBPZQ03701 1054 aaKnown RBP11.73□□□□□ -0.53
COL6A3-214ENST00000493608 MAPK7Q13164 816 aa11.73□□□□□ -0.53
COL6A3-214ENST00000493608 PTPN14Q15678 1187 aa11.73□□□□□ -0.53
COL6A3-214ENST00000493608 HYIQ5T013 277 aa11.73□□□□□ -0.53
COL6A3-214ENST00000493608 ATF7IP2Q5U623 682 aa11.73□□□□□ -0.53
COL6A3-214ENST00000493608 ARL6IP4Q66PJ3 421 aaKnown RBP11.73□□□□□ -0.53
COL6A3-214ENST00000493608 TAS1R3Q7RTX0 852 aa11.73□□□□□ -0.53
COL6A3-214ENST00000493608 BRAPQ7Z569 592 aa11.73□□□□□ -0.53
COL6A3-214ENST00000493608 RDH13Q8NBN7 331 aa11.73□□□□□ -0.53
COL6A3-214ENST00000493608 LRRC15Q8TF66 581 aa11.73□□□□□ -0.53
COL6A3-214ENST00000493608 CASP10Q92851 521 aa11.73□□□□□ -0.53
COL6A3-214ENST00000493608 PAAF1Q9BRP4 392 aa11.73□□□□□ -0.53
COL6A3-214ENST00000493608 ADPGKQ9BRR6 497 aa11.73□□□□□ -0.53
COL6A3-214ENST00000493608 C1QTNF1Q9BXJ1 281 aa11.73□□□□□ -0.53
COL6A3-214ENST00000493608 KMT5AQ9NQR1 393 aa11.73□□□□□ -0.53
COL6A3-214ENST00000493608 GTF3C3Q9Y5Q9 886 aa11.73□□□□□ -0.53
COL6A3-214ENST00000493608 CLIC4Q9Y696 253 aa11.73□□□□□ -0.53
COL6A3-214ENST00000493608 FSD2A1L4K1 749 aa11.72□□□□□ -0.53
COL6A3-214ENST00000493608 CARNS1A5YM72 827 aa11.72□□□□□ -0.53
COL6A3-214ENST00000493608 CASTOR2A6NHX0 329 aa11.72□□□□□ -0.53
COL6A3-214ENST00000493608 PTGESO14684 152 aa11.72□□□□□ -0.53
COL6A3-214ENST00000493608 SOD2P04179 222 aa11.72□□□□□ -0.53
COL6A3-214ENST00000493608 CNPP09543 421 aaKnown RBP11.72□□□□□ -0.53
COL6A3-214ENST00000493608 PDCP20941 246 aa11.72□□□□□ -0.53
COL6A3-214ENST00000493608 KLRC2P26717 231 aa11.72□□□□□ -0.53
COL6A3-214ENST00000493608 MARCKSP29966 332 aaPredicted RBP11.72□□□□□ -0.53
COL6A3-214ENST00000493608 UBA7P41226 1012 aa11.72□□□□□ -0.53
COL6A3-214ENST00000493608 GCGRP47871 477 aa11.72□□□□□ -0.53
COL6A3-214ENST00000493608 EFNA5P52803 228 aa11.72□□□□□ -0.53
COL6A3-214ENST00000493608 OSTNP61366 133 aa11.72□□□□□ -0.53
COL6A3-214ENST00000493608 DMP1Q13316 513 aaPredicted RBP11.72□□□□□ -0.53
COL6A3-214ENST00000493608 TMEM119Q4V9L6 283 aa11.72□□□□□ -0.53
COL6A3-214ENST00000493608 ARSHQ5FYA8 562 aa11.72□□□□□ -0.53
COL6A3-214ENST00000493608 SPECC1Q5M775 1068 aa11.72□□□□□ -0.53
COL6A3-214ENST00000493608 RARS2Q5T160 578 aaKnown RBP11.72□□□□□ -0.53
COL6A3-214ENST00000493608 ZBTB33Q86T24 672 aa11.72□□□□□ -0.53
COL6A3-214ENST00000493608 RNF135Q8IUD6 432 aa11.72□□□□□ -0.53
COL6A3-214ENST00000493608 CEP120Q8N960 986 aa11.72□□□□□ -0.53
COL6A3-214ENST00000493608 SYT2Q8N9I0 419 aaPredicted RBP11.72□□□□□ -0.53
COL6A3-214ENST00000493608 HASPINQ8TF76 798 aa11.72□□□□□ -0.53
COL6A3-214ENST00000493608 SLC22A17Q8WUG5 538 aa11.72□□□□□ -0.53
COL6A3-214ENST00000493608 SUSD6Q92537 303 aa11.72□□□□□ -0.53
COL6A3-214ENST00000493608 DRC1Q96MC2 740 aa11.72□□□□□ -0.53
COL6A3-214ENST00000493608 KLHL5Q96PQ7 755 aa11.72□□□□□ -0.53
COL6A3-214ENST00000493608 ACO2Q99798 780 aaKnown RBP11.72□□□□□ -0.53
COL6A3-214ENST00000493608 LRFN3Q9BTN0 628 aa11.72□□□□□ -0.53
COL6A3-214ENST00000493608 TARS2Q9BW92 718 aaKnown RBP11.72□□□□□ -0.53
COL6A3-214ENST00000493608 COLEC11Q9BWP8 271 aa11.72□□□□□ -0.53
COL6A3-214ENST00000493608 GPR62Q9BZJ7 368 aa11.72□□□□□ -0.53
COL6A3-214ENST00000493608 NT5C3AQ9H0P0 336 aa11.72□□□□□ -0.53
COL6A3-214ENST00000493608 C11orf16Q9NQ32 467 aa11.72□□□□□ -0.53
COL6A3-214ENST00000493608 MUTYHQ9UIF7 546 aa11.72□□□□□ -0.53
COL6A3-214ENST00000493608 IRAK3Q9Y616 596 aa11.72□□□□□ -0.53
COL6A3-214ENST00000493608 PLXNA3P51805 1871 aa11.72□□□□□ -0.53
COL6A3-214ENST00000493608 K7ELQ4 463 aaPredicted RBP11.71□□□□□ -0.53
COL6A3-214ENST00000493608 LILRB3O75022 631 aa11.71□□□□□ -0.53
COL6A3-214ENST00000493608 TADA2AO75478 443 aa11.71□□□□□ -0.53
COL6A3-214ENST00000493608 THP07101 528 aa11.71□□□□□ -0.53
COL6A3-214ENST00000493608 IGFBP6P24592 240 aaPredicted RBP11.71□□□□□ -0.53
COL6A3-214ENST00000493608 GRIK3Q13003 919 aa11.71□□□□□ -0.53
COL6A3-214ENST00000493608 RESTQ13127 1097 aa11.71□□□□□ -0.53
COL6A3-214ENST00000493608 GIT2Q14161 759 aa11.71□□□□□ -0.53
COL6A3-214ENST00000493608 MCM6Q14566 821 aa11.71□□□□□ -0.53
COL6A3-214ENST00000493608 CBX2Q14781 532 aaPredicted RBP11.71□□□□□ -0.53
COL6A3-214ENST00000493608 KARSQ15046 597 aaKnown RBP11.71□□□□□ -0.53
COL6A3-214ENST00000493608 GLRA4Q5JXX5 417 aa11.71□□□□□ -0.53
COL6A3-214ENST00000493608 KIAA1841Q6NSI8 718 aa11.71□□□□□ -0.53
COL6A3-214ENST00000493608 GLYCTKQ8IVS8 523 aa11.71□□□□□ -0.53
COL6A3-214ENST00000493608 CALML4Q96GE6 196 aa11.71□□□□□ -0.53
COL6A3-214ENST00000493608 ZBTB45Q96K62 511 aaPredicted RBP11.71□□□□□ -0.53
COL6A3-214ENST00000493608 AK8Q96MA6 479 aa11.71□□□□□ -0.53
COL6A3-214ENST00000493608 POP1Q99575 1024 aaKnown RBP11.71□□□□□ -0.53
COL6A3-214ENST00000493608 PHF7Q9BWX1 381 aaPredicted RBP11.71□□□□□ -0.53
COL6A3-214ENST00000493608 MRPL17Q9NRX2 175 aaKnown RBP11.71□□□□□ -0.53
COL6A3-214ENST00000493608 ARHGAP28Q9P2N2 729 aa11.71□□□□□ -0.53
COL6A3-214ENST00000493608 CITO14578 2027 aa11.7□□□□□ -0.54
COL6A3-214ENST00000493608 LOC730098B7Z3J9 87 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms