RNA–Protein interactions for RNA: ENST00000492606.1

UBR4-215, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 3

Gene UBR4, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-215	ENST00000492606	RUFY4	Q6ZNE9	571 aa		4.88	□□□□□ -1.63
UBR4-215	ENST00000492606	GK5	Q6ZS86	529 aa		4.88	□□□□□ -1.63
UBR4-215	ENST00000492606	CCDC149	Q6ZUS6	474 aa		4.88	□□□□□ -1.63
UBR4-215	ENST00000492606	CYFIP1	Q7L576	1253 aa		4.88	□□□□□ -1.63
UBR4-215	ENST00000492606	LONP2	Q86WA8	852 aa		4.88	□□□□□ -1.63
UBR4-215	ENST00000492606	LSR	Q86X29	649 aa	Predicted RBP	4.88	□□□□□ -1.63
UBR4-215	ENST00000492606	RIOX2	Q8IUF8	465 aa		4.88	□□□□□ -1.63
UBR4-215	ENST00000492606	FAM26E	Q8N5C1	309 aa		4.88	□□□□□ -1.63
UBR4-215	ENST00000492606	KRT82	Q9NSB4	513 aa		4.88	□□□□□ -1.63
UBR4-215	ENST00000492606	PCDHB14	Q9Y5E9	798 aa		4.88	□□□□□ -1.63
UBR4-215	ENST00000492606	PCDHGA5	Q9Y5G8	931 aa		4.88	□□□□□ -1.63
UBR4-215	ENST00000492606	CORIN	Q9Y5Q5	1042 aa		4.88	□□□□□ -1.63
UBR4-215	ENST00000492606	HEMK1	Q9Y5R4	338 aa	Predicted RBP	4.88	□□□□□ -1.63
UBR4-215	ENST00000492606	TTC3	P53804	2025 aa		4.88	□□□□□ -1.63
UBR4-215	ENST00000492606	RYR3	Q15413	4870 aa		4.88	□□□□□ -1.63
UBR4-215	ENST00000492606	LOC100289279	A0A1B0GTE1	492 aa		4.87	□□□□□ -1.63
UBR4-215	ENST00000492606	PATE3	B3GLJ2	98 aa		4.87	□□□□□ -1.63
UBR4-215	ENST00000492606		K7ESF4	209 aa		4.87	□□□□□ -1.63
UBR4-215	ENST00000492606	LIG1	P18858	919 aa		4.87	□□□□□ -1.63
UBR4-215	ENST00000492606	DCT	P40126	519 aa		4.87	□□□□□ -1.63
UBR4-215	ENST00000492606	DGKG	P49619	791 aa		4.87	□□□□□ -1.63
UBR4-215	ENST00000492606	ZNF165	P49910	485 aa		4.87	□□□□□ -1.63
UBR4-215	ENST00000492606	RHD	Q02161	417 aa		4.87	□□□□□ -1.63
UBR4-215	ENST00000492606	PRKCQ	Q04759	706 aa		4.87	□□□□□ -1.63
UBR4-215	ENST00000492606	NONO	Q15233	471 aa	Known RBP eCLIP	4.87	□□□□□ -1.63
UBR4-215	ENST00000492606	POU4F3	Q15319	338 aa		4.87	□□□□□ -1.63
UBR4-215	ENST00000492606	KRT24	Q2M2I5	525 aa		4.87	□□□□□ -1.63
UBR4-215	ENST00000492606	CWF19L2	Q2TBE0	894 aa	Known RBP	4.87	□□□□□ -1.63
UBR4-215	ENST00000492606	KIAA1755	Q5JYT7	1200 aa		4.87	□□□□□ -1.63
UBR4-215	ENST00000492606	ZNF662	Q6ZS27	426 aa		4.87	□□□□□ -1.63
UBR4-215	ENST00000492606	DMRTC2	Q8IXT2	367 aa	Predicted RBP	4.87	□□□□□ -1.63
UBR4-215	ENST00000492606	CCDC144CP	Q8IYA2	1237 aa		4.87	□□□□□ -1.63
UBR4-215	ENST00000492606	MB21D1	Q8N884	522 aa		4.87	□□□□□ -1.63
UBR4-215	ENST00000492606	KCNB2	Q92953	911 aa		4.87	□□□□□ -1.63
UBR4-215	ENST00000492606	ANAPC16	Q96DE5	110 aa		4.87	□□□□□ -1.63
UBR4-215	ENST00000492606	PLPPR2	Q96GM1	343 aa		4.87	□□□□□ -1.63
UBR4-215	ENST00000492606	FEZ1	Q99689	392 aa		4.87	□□□□□ -1.63
UBR4-215	ENST00000492606	KIAA1683	Q9H0B3	1180 aa		4.87	□□□□□ -1.63
UBR4-215	ENST00000492606	ACAN	P16112	2415 aa		4.87	□□□□□ -1.63
UBR4-215	ENST00000492606	DLG5	Q8TDM6	1919 aa		4.87	□□□□□ -1.63
UBR4-215	ENST00000492606	TLN2	Q9Y4G6	2542 aa		4.87	□□□□□ -1.63
UBR4-215	ENST00000492606	SDK2	Q58EX2	2172 aa		4.87	□□□□□ -1.63
UBR4-215	ENST00000492606	MEIS3P2	A8K0S8	358 aa		4.86	□□□□□ -1.63
UBR4-215	ENST00000492606		K7ELQ4	463 aa	Predicted RBP	4.86	□□□□□ -1.63
UBR4-215	ENST00000492606	SUV39H1	O43463	412 aa		4.86	□□□□□ -1.63
UBR4-215	ENST00000492606	DGKI	O75912	1065 aa		4.86	□□□□□ -1.63
UBR4-215	ENST00000492606	CYP11A1	P05108	521 aa		4.86	□□□□□ -1.63
UBR4-215	ENST00000492606	NEFM	P07197	916 aa		4.86	□□□□□ -1.63
UBR4-215	ENST00000492606	FTH1P19	P0C7X4	201 aa		4.86	□□□□□ -1.63
UBR4-215	ENST00000492606	MCM4	P33991	863 aa		4.86	□□□□□ -1.63
UBR4-215	ENST00000492606	NTF4	P34130	210 aa		4.86	□□□□□ -1.63
UBR4-215	ENST00000492606	GMPR	P36959	345 aa		4.86	□□□□□ -1.63
UBR4-215	ENST00000492606	USP14	P54578	494 aa		4.86	□□□□□ -1.63
UBR4-215	ENST00000492606	CASP7	P55210	303 aa		4.86	□□□□□ -1.63
UBR4-215	ENST00000492606	CHMP4BP1	P59074	171 aa		4.86	□□□□□ -1.63
UBR4-215	ENST00000492606	SEMA3B	Q13214	749 aa		4.86	□□□□□ -1.63
UBR4-215	ENST00000492606	BMS1	Q14692	1282 aa	Known RBP	4.86	□□□□□ -1.63
UBR4-215	ENST00000492606	SUZ12	Q15022	739 aa	Known RBP	4.86	□□□□□ -1.63
UBR4-215	ENST00000492606	ZC3H12A	Q5D1E8	599 aa	Known RBP	4.86	□□□□□ -1.63
UBR4-215	ENST00000492606	EGFLAM	Q63HQ2	1017 aa		4.86	□□□□□ -1.63
UBR4-215	ENST00000492606	TAPT1	Q6NXT6	567 aa		4.86	□□□□□ -1.63
UBR4-215	ENST00000492606	LINC00114	Q6XXX2	140 aa		4.86	□□□□□ -1.63
UBR4-215	ENST00000492606	WFDC8	Q8IUA0	241 aa		4.86	□□□□□ -1.63
UBR4-215	ENST00000492606	CKAP2L	Q8IYA6	745 aa		4.86	□□□□□ -1.63
UBR4-215	ENST00000492606	AFG1L	Q8WV93	481 aa		4.86	□□□□□ -1.63
UBR4-215	ENST00000492606	IRF7	Q92985	503 aa		4.86	□□□□□ -1.63
UBR4-215	ENST00000492606	KANSL2	Q9H9L4	492 aa		4.86	□□□□□ -1.63
UBR4-215	ENST00000492606	C2orf42	Q9NWW7	574 aa		4.86	□□□□□ -1.63
UBR4-215	ENST00000492606	SIRPG	Q9P1W8	387 aa		4.86	□□□□□ -1.63
UBR4-215	ENST00000492606	EPS15L1	Q9UBC2	864 aa		4.86	□□□□□ -1.63
UBR4-215	ENST00000492606	HERC5	Q9UII4	1024 aa	Known RBP	4.86	□□□□□ -1.63
UBR4-215	ENST00000492606	PCDHA4	Q9UN74	947 aa		4.86	□□□□□ -1.63
UBR4-215	ENST00000492606		Q9Y3F1	56 aa		4.86	□□□□□ -1.63
UBR4-215	ENST00000492606	MROH7-TTC4	A0A0A0MT08	1334 aa		4.86	□□□□□ -1.63
UBR4-215	ENST00000492606	ANKRD18B	A2A2Z9	1011 aa		4.85	□□□□□ -1.63
UBR4-215	ENST00000492606	WIPF3	A6NGB9	483 aa		4.85	□□□□□ -1.63
UBR4-215	ENST00000492606	MEFV	O15553	781 aa	Predicted RBP	4.85	□□□□□ -1.63
UBR4-215	ENST00000492606	CLASP2	O75122	1294 aa	Known RBP	4.85	□□□□□ -1.63
UBR4-215	ENST00000492606	HTR3B	O95264	441 aa		4.85	□□□□□ -1.63
UBR4-215	ENST00000492606	CAVIN2	O95810	425 aa		4.85	□□□□□ -1.63
UBR4-215	ENST00000492606	GH2	P01242	217 aa		4.85	□□□□□ -1.63
UBR4-215	ENST00000492606	IGKV5-2	P06315	115 aa		4.85	□□□□□ -1.63
UBR4-215	ENST00000492606	EPCAM	P16422	314 aa		4.85	□□□□□ -1.63
UBR4-215	ENST00000492606	CXCL12	P48061	93 aa		4.85	□□□□□ -1.63
UBR4-215	ENST00000492606	CCR3	P51677	355 aa		4.85	□□□□□ -1.63
UBR4-215	ENST00000492606	IRX4	P78413	519 aa		4.85	□□□□□ -1.63
UBR4-215	ENST00000492606	TLE1	Q04724	770 aa		4.85	□□□□□ -1.63
UBR4-215	ENST00000492606	UBE3A	Q05086	875 aa		4.85	□□□□□ -1.63
UBR4-215	ENST00000492606	HTR4	Q13639	388 aa		4.85	□□□□□ -1.63
UBR4-215	ENST00000492606	LETM2	Q2VYF4	491 aa		4.85	□□□□□ -1.63
UBR4-215	ENST00000492606	PAN2	Q504Q3	1202 aa	Known RBP	4.85	□□□□□ -1.63
UBR4-215	ENST00000492606	WIPI1	Q5MNZ9	446 aa	Predicted RBP	4.85	□□□□□ -1.63
UBR4-215	ENST00000492606	C1QL3	Q5VWW1	255 aa		4.85	□□□□□ -1.63
UBR4-215	ENST00000492606	RSPO2	Q6UXX9	243 aa	Predicted RBP	4.85	□□□□□ -1.63
UBR4-215	ENST00000492606	CACNA2D4	Q7Z3S7	1137 aa		4.85	□□□□□ -1.63
UBR4-215	ENST00000492606	GPR149	Q86SP6	731 aa		4.85	□□□□□ -1.63
UBR4-215	ENST00000492606	SLCO6A1	Q86UG4	719 aa		4.85	□□□□□ -1.63
UBR4-215	ENST00000492606	SPATA3	Q8NHX4	192 aa		4.85	□□□□□ -1.63
UBR4-215	ENST00000492606	SEPT8	Q92599	483 aa		4.85	□□□□□ -1.63
UBR4-215	ENST00000492606	TRIM11	Q96F44	468 aa		4.85	□□□□□ -1.63

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