RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 NCDNQ9UBB6 729 aa3.95□□□□□ -1.78
DEPDC1-204ENST00000489862 USP25Q9UHP3 1055 aa3.95□□□□□ -1.78
DEPDC1-204ENST00000489862 LUC7L2Q9Y383 392 aaKnown RBP3.95□□□□□ -1.78
DEPDC1-204ENST00000489862 PCDHGB3Q9Y5G1 929 aa3.95□□□□□ -1.78
DEPDC1-204ENST00000489862 RSF1Q96T23 1441 aaPredicted RBP3.95□□□□□ -1.78
DEPDC1-204ENST00000489862 KLRG2A4D1S0 409 aaPredicted RBP3.94□□□□□ -1.78
DEPDC1-204ENST00000489862 LCHNA4D1U4 455 aa3.94□□□□□ -1.78
DEPDC1-204ENST00000489862 ELL2O00472 640 aaPredicted RBP3.94□□□□□ -1.78
DEPDC1-204ENST00000489862 NPHP1O15259 732 aa3.94□□□□□ -1.78
DEPDC1-204ENST00000489862 OPHN1O60890 802 aa3.94□□□□□ -1.78
DEPDC1-204ENST00000489862 HALP42357 657 aa3.94□□□□□ -1.78
DEPDC1-204ENST00000489862 KIR2DL3P43628 341 aa3.94□□□□□ -1.78
DEPDC1-204ENST00000489862 ODF1Q14990 250 aa3.94□□□□□ -1.78
DEPDC1-204ENST00000489862 COBLL1Q53SF7 1204 aa3.94□□□□□ -1.78
DEPDC1-204ENST00000489862 FKBP15Q5T1M5 1219 aa3.94□□□□□ -1.78
DEPDC1-204ENST00000489862 ANO1Q5XXA6 986 aa3.94□□□□□ -1.78
DEPDC1-204ENST00000489862 KIAA1841Q6NSI8 718 aa3.94□□□□□ -1.78
DEPDC1-204ENST00000489862 Q6ZPA2 131 aa3.94□□□□□ -1.78
DEPDC1-204ENST00000489862 GSPT2Q8IYD1 628 aaKnown RBP3.94□□□□□ -1.78
DEPDC1-204ENST00000489862 ELOA2Q8IYF1 753 aaPredicted RBP3.94□□□□□ -1.78
DEPDC1-204ENST00000489862 NOL10Q9BSC4 688 aaKnown RBP3.94□□□□□ -1.78
DEPDC1-204ENST00000489862 KRTAP4-4Q9BYR3 166 aa3.94□□□□□ -1.78
DEPDC1-204ENST00000489862 PARPBPQ9NWS1 579 aa3.94□□□□□ -1.78
DEPDC1-204ENST00000489862 SYNPO2Q9UMS6 1093 aa3.94□□□□□ -1.78
DEPDC1-204ENST00000489862 SCINQ9Y6U3 715 aa3.94□□□□□ -1.78
DEPDC1-204ENST00000489862 BAZ1AQ9NRL2 1556 aaPredicted RBP3.93□□□□□ -1.78
DEPDC1-204ENST00000489862 DYTNA2CJ06 578 aa3.93□□□□□ -1.78
DEPDC1-204ENST00000489862 A6NNZ2 444 aa3.93□□□□□ -1.78
DEPDC1-204ENST00000489862 TGM5O43548 720 aa3.93□□□□□ -1.78
DEPDC1-204ENST00000489862 STC2O76061 302 aa3.93□□□□□ -1.78
DEPDC1-204ENST00000489862 PRKD3O94806 890 aa3.93□□□□□ -1.78
DEPDC1-204ENST00000489862 PCDH8O95206 1070 aa3.93□□□□□ -1.78
DEPDC1-204ENST00000489862 JUNP05412 331 aaKnown RBP3.93□□□□□ -1.78
DEPDC1-204ENST00000489862 MYL3P08590 195 aa3.93□□□□□ -1.78
DEPDC1-204ENST00000489862 MYBP10242 640 aa3.93□□□□□ -1.78
DEPDC1-204ENST00000489862 POU3F2P20265 443 aaPredicted RBP3.93□□□□□ -1.78
DEPDC1-204ENST00000489862 HTR3AP46098 478 aa3.93□□□□□ -1.78
DEPDC1-204ENST00000489862 SMAD3P84022 425 aaKnown RBP3.93□□□□□ -1.78
DEPDC1-204ENST00000489862 SLC25A3Q00325 362 aa3.93□□□□□ -1.78
DEPDC1-204ENST00000489862 CNGB1Q14028 1251 aaPredicted RBP3.93□□□□□ -1.78
DEPDC1-204ENST00000489862 MAPRE1Q15691 268 aaKnown RBP3.93□□□□□ -1.78
DEPDC1-204ENST00000489862 PTPN21Q16825 1174 aa3.93□□□□□ -1.78
DEPDC1-204ENST00000489862 STRIP1Q5VSL9 837 aa3.93□□□□□ -1.78
DEPDC1-204ENST00000489862 RNF219Q5W0B1 726 aaPredicted RBP3.93□□□□□ -1.78
DEPDC1-204ENST00000489862 ADGRG3Q86Y34 549 aa3.93□□□□□ -1.78
DEPDC1-204ENST00000489862 KIF18BQ86Y91 864 aa3.93□□□□□ -1.78
DEPDC1-204ENST00000489862 ZZZ3Q8IYH5 903 aa3.93□□□□□ -1.78
DEPDC1-204ENST00000489862 CMTM4Q8IZR5 234 aa3.93□□□□□ -1.78
DEPDC1-204ENST00000489862 EFHBQ8N7U6 833 aa3.93□□□□□ -1.78
DEPDC1-204ENST00000489862 ANKRD42Q8N9B4 389 aa3.93□□□□□ -1.78
DEPDC1-204ENST00000489862 NGDNQ8NEJ9 315 aaKnown RBP3.93□□□□□ -1.78
DEPDC1-204ENST00000489862 PGBD4Q96DM1 585 aa3.93□□□□□ -1.78
DEPDC1-204ENST00000489862 ZNF496Q96IT1 587 aaPredicted RBP3.93□□□□□ -1.78
DEPDC1-204ENST00000489862 LRGUKQ96M69 825 aa3.93□□□□□ -1.78
DEPDC1-204ENST00000489862 MS4A5Q9H3V2 200 aa3.93□□□□□ -1.78
DEPDC1-204ENST00000489862 C14orf93Q9H972 538 aaKnown RBP3.93□□□□□ -1.78
DEPDC1-204ENST00000489862 ING3Q9NXR8 418 aa3.93□□□□□ -1.78
DEPDC1-204ENST00000489862 MYPNQ86TC9 1320 aa3.93□□□□□ -1.78
DEPDC1-204ENST00000489862 ZAR1LA6NP61 321 aa3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 RPS6KA4O75676 772 aa3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 PF4V1P10720 104 aa3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 CD40P25942 277 aa3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 MAN2A2P49641 1150 aa3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 RABGGTBP53611 331 aa3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 GPSM2P81274 684 aa3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 HLTFQ14527 1009 aaKnown RBP eCLIP3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 PCBP2Q15366 365 aaKnown RBP eCLIP3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 ZBTB41Q5SVQ8 909 aa3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 LVRNQ6Q4G3 990 aa3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 PAF1Q8N7H5 531 aa3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 MB21D1Q8N884 522 aa3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 C1orf131Q8NDD1 294 aaKnown RBP3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 PIK3C3Q8NEB9 887 aa3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 ARL8AQ96BM9 186 aa3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 HIST1H2AHQ96KK5 128 aa3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 ZNF512Q96ME7 567 aaPredicted RBP3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 GPR101Q96P66 508 aaPredicted RBP3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 UIMC1Q96RL1 719 aa3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 HIST1H2AJQ99878 128 aa3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 GPR87Q9BY21 358 aa3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 OSBPL6Q9BZF3 934 aa3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 C9orf78Q9NZ63 289 aaPredicted RBP3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 MSRAQ9UJ68 235 aa3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 PEG3Q9GZU2 1588 aa3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 XDHP47989 1333 aa3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 WIZO95785 1651 aa3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 GOLGA6CA6NDK9 693 aa3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 GOLGA6BA6NDN3 693 aa3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 PMM2O15305 246 aa3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 FAM20BO75063 409 aa3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 FSBPO95073 299 aa3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 MT-CO1P00395 513 aa3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 GOLGA6DP0CG33 693 aa3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 GAAP10253 952 aa3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 KPNA1P52294 538 aaPredicted RBP3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 NPEPPSP55786 919 aa3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 CD69Q07108 199 aa3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 PICALMQ13492 652 aa3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 LRRC32Q14392 662 aa3.92□□□□□ -1.78
DEPDC1-204ENST00000489862 DHCR24Q15392 516 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms