RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 ADAM12O43184 909 aa13.67□□□□□ -0.22
CPSF3-204ENST00000489403 NEFLP07196 543 aa13.67□□□□□ -0.22
CPSF3-204ENST00000489403 C8AP07357 584 aa13.67□□□□□ -0.22
CPSF3-204ENST00000489403 FSHRP23945 695 aa13.67□□□□□ -0.22
CPSF3-204ENST00000489403 NTHL1P78549 312 aa13.67□□□□□ -0.22
CPSF3-204ENST00000489403 ORC2Q13416 577 aaPredicted RBP13.67□□□□□ -0.22
CPSF3-204ENST00000489403 HAUS3Q68CZ6 603 aa13.67□□□□□ -0.22
CPSF3-204ENST00000489403 CCDC83Q8IWF9 413 aa13.67□□□□□ -0.22
CPSF3-204ENST00000489403 C8orf76Q96K31 380 aa13.67□□□□□ -0.22
CPSF3-204ENST00000489403 SNX27Q96L92 541 aa13.67□□□□□ -0.22
CPSF3-204ENST00000489403 FOXP1Q9H334 677 aaPredicted RBP13.67□□□□□ -0.22
CPSF3-204ENST00000489403 TBC1D17Q9HA65 648 aa13.67□□□□□ -0.22
CPSF3-204ENST00000489403 POLD4Q9HCU8 107 aa13.67□□□□□ -0.22
CPSF3-204ENST00000489403 GDAQ9Y2T3 454 aa13.67□□□□□ -0.22
CPSF3-204ENST00000489403 TMEM189-UBE2V1I3L0A0 370 aa13.66□□□□□ -0.22
CPSF3-204ENST00000489403 SEC24BO95487 1268 aa13.66□□□□□ -0.22
CPSF3-204ENST00000489403 HNRNPA1P09651 372 aaKnown RBP eCLIP13.66□□□□□ -0.22
CPSF3-204ENST00000489403 MUTP22033 750 aa13.66□□□□□ -0.22
CPSF3-204ENST00000489403 RFX1P22670 979 aa13.66□□□□□ -0.22
CPSF3-204ENST00000489403 IGFBP6P24592 240 aaPredicted RBP13.66□□□□□ -0.22
CPSF3-204ENST00000489403 HOXA9P31269 272 aa13.66□□□□□ -0.22
CPSF3-204ENST00000489403 ELAVL2Q12926 359 aaKnown RBP13.66□□□□□ -0.22
CPSF3-204ENST00000489403 PPP2R5AQ15172 486 aa13.66□□□□□ -0.22
CPSF3-204ENST00000489403 DCAF4L1Q3SXM0 396 aa13.66□□□□□ -0.22
CPSF3-204ENST00000489403 GLRA4Q5JXX5 417 aa13.66□□□□□ -0.22
CPSF3-204ENST00000489403 TTC38Q5R3I4 469 aa13.66□□□□□ -0.22
CPSF3-204ENST00000489403 PPM1LQ5SGD2 360 aa13.66□□□□□ -0.22
CPSF3-204ENST00000489403 LIN9Q5TKA1 542 aa13.66□□□□□ -0.22
CPSF3-204ENST00000489403 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.66□□□□□ -0.22
CPSF3-204ENST00000489403 FGF14Q92915 247 aa13.66□□□□□ -0.22
CPSF3-204ENST00000489403 RPP25Q9BUL9 199 aaKnown RBP13.66□□□□□ -0.22
CPSF3-204ENST00000489403 ARHGEF3Q9NR81 526 aa13.66□□□□□ -0.22
CPSF3-204ENST00000489403 SLC2A4RGQ9NR83 387 aa13.66□□□□□ -0.22
CPSF3-204ENST00000489403 NOTCH4Q99466 2003 aa13.65□□□□□ -0.22
CPSF3-204ENST00000489403 CCL16O15467 120 aa13.65□□□□□ -0.22
CPSF3-204ENST00000489403 DCNP07585 359 aaKnown RBP13.65□□□□□ -0.22
CPSF3-204ENST00000489403 CCT6AP40227 531 aaKnown RBP13.65□□□□□ -0.22
CPSF3-204ENST00000489403 FXR2P51116 673 aaKnown RBP eCLIP13.65□□□□□ -0.22
CPSF3-204ENST00000489403 CLCNKBP51801 687 aa13.65□□□□□ -0.22
CPSF3-204ENST00000489403 NBR1Q14596 966 aa13.65□□□□□ -0.22
CPSF3-204ENST00000489403 NT5DC1Q5TFE4 455 aa13.65□□□□□ -0.22
CPSF3-204ENST00000489403 ATF7IP2Q5U623 682 aa13.65□□□□□ -0.22
CPSF3-204ENST00000489403 PHLDB3Q6NSJ2 640 aa13.65□□□□□ -0.22
CPSF3-204ENST00000489403 PDXDC1Q6P996 788 aa13.65□□□□□ -0.22
CPSF3-204ENST00000489403 PARM1Q6UWI2 310 aa13.65□□□□□ -0.22
CPSF3-204ENST00000489403 CD300LGQ6UXG3 332 aa13.65□□□□□ -0.22
CPSF3-204ENST00000489403 ADSSL1Q8N142 457 aa13.65□□□□□ -0.22
CPSF3-204ENST00000489403 C4orf32Q8N8J7 132 aa13.65□□□□□ -0.22
CPSF3-204ENST00000489403 SLC7A14Q8TBB6 771 aa13.65□□□□□ -0.22
CPSF3-204ENST00000489403 IFT74Q96LB3 600 aa13.65□□□□□ -0.22
CPSF3-204ENST00000489403 PPP1R10Q96QC0 940 aaKnown RBP13.65□□□□□ -0.22
CPSF3-204ENST00000489403 BHMT2Q9H2M3 363 aa13.65□□□□□ -0.22
CPSF3-204ENST00000489403 GOLGA2P5Q9HBQ8 144 aa13.65□□□□□ -0.22
CPSF3-204ENST00000489403 PPP4R2Q9NY27 417 aa13.65□□□□□ -0.22
CPSF3-204ENST00000489403 DLGAP2Q9P1A6 1054 aa13.65□□□□□ -0.22
CPSF3-204ENST00000489403 MTRRQ9UBK8 725 aa13.65□□□□□ -0.22
CPSF3-204ENST00000489403 CDH7Q9ULB5 785 aa13.65□□□□□ -0.22
CPSF3-204ENST00000489403 LIMCH1Q9UPQ0 1083 aa13.65□□□□□ -0.22
CPSF3-204ENST00000489403 ZFP37Q9Y6Q3 630 aaPredicted RBP13.65□□□□□ -0.22
CPSF3-204ENST00000489403 COL4A3Q01955 1670 aa13.65□□□□□ -0.22
CPSF3-204ENST00000489403 ZFHX2Q9C0A1 2572 aaPredicted RBP13.65□□□□□ -0.22
CPSF3-204ENST00000489403 B3GAT3O94766 335 aa13.64□□□□□ -0.23
CPSF3-204ENST00000489403 FGFR3P22607 806 aa13.64□□□□□ -0.23
CPSF3-204ENST00000489403 OR1D2P34982 312 aa13.64□□□□□ -0.23
CPSF3-204ENST00000489403 RBM25P49756 843 aaKnown RBP13.64□□□□□ -0.23
CPSF3-204ENST00000489403 EFNA5P52803 228 aa13.64□□□□□ -0.23
CPSF3-204ENST00000489403 RAB33AQ14088 237 aa13.64□□□□□ -0.23
CPSF3-204ENST00000489403 SPECC1Q5M775 1068 aa13.64□□□□□ -0.23
CPSF3-204ENST00000489403 AXDND1Q5T1B0 1012 aaPredicted RBP13.64□□□□□ -0.23
CPSF3-204ENST00000489403 DCLRE1AQ6PJP8 1040 aa13.64□□□□□ -0.23
CPSF3-204ENST00000489403 RSPO2Q6UXX9 243 aaPredicted RBP13.64□□□□□ -0.23
CPSF3-204ENST00000489403 CEP120Q8N960 986 aa13.64□□□□□ -0.23
CPSF3-204ENST00000489403 FBXO18Q8NFZ0 1043 aa13.64□□□□□ -0.23
CPSF3-204ENST00000489403 ITFG1Q8TB96 612 aa13.64□□□□□ -0.23
CPSF3-204ENST00000489403 KIFAP3Q92845 792 aa13.64□□□□□ -0.23
CPSF3-204ENST00000489403 FGF13Q92913 245 aa13.64□□□□□ -0.23
CPSF3-204ENST00000489403 LLPHQ9BRT6 129 aaKnown RBP13.64□□□□□ -0.23
CPSF3-204ENST00000489403 POLIQ9UNA4 740 aa13.64□□□□□ -0.23
CPSF3-204ENST00000489403 KIAA1024Q9UPX6 916 aa13.64□□□□□ -0.23
CPSF3-204ENST00000489403 DCHS1Q96JQ0 3298 aa13.64□□□□□ -0.23
CPSF3-204ENST00000489403 PHLPP2Q6ZVD8 1323 aa13.64□□□□□ -0.23
CPSF3-204ENST00000489403 MIA3Q5JRA6 1907 aa13.63□□□□□ -0.23
CPSF3-204ENST00000489403 XYLBO75191 536 aa13.63□□□□□ -0.23
CPSF3-204ENST00000489403 POU2F2P09086 479 aa13.63□□□□□ -0.23
CPSF3-204ENST00000489403 TKTP29401 623 aaKnown RBP13.63□□□□□ -0.23
CPSF3-204ENST00000489403 TRAPPC10P48553 1259 aa13.63□□□□□ -0.23
CPSF3-204ENST00000489403 GPC5P78333 572 aa13.63□□□□□ -0.23
CPSF3-204ENST00000489403 UPP1Q16831 310 aa13.63□□□□□ -0.23
CPSF3-204ENST00000489403 C3orf58Q8NDZ4 430 aa13.63□□□□□ -0.23
CPSF3-204ENST00000489403 PJA1Q8NG27 643 aa13.63□□□□□ -0.23
CPSF3-204ENST00000489403 SNX29Q8TEQ0 813 aa13.63□□□□□ -0.23
CPSF3-204ENST00000489403 DDX27Q96GQ7 796 aaKnown RBP13.63□□□□□ -0.23
CPSF3-204ENST00000489403 UROC1Q96N76 676 aa13.63□□□□□ -0.23
CPSF3-204ENST00000489403 FOXQ1Q9C009 403 aa13.63□□□□□ -0.23
CPSF3-204ENST00000489403 CDT1Q9H211 546 aa13.63□□□□□ -0.23
CPSF3-204ENST00000489403 DDX19AQ9NUU7 478 aaKnown RBP13.63□□□□□ -0.23
CPSF3-204ENST00000489403 HCFC1R1Q9NWW0 138 aa13.63□□□□□ -0.23
CPSF3-204ENST00000489403 DNMT3BQ9UBC3 853 aaKnown RBP13.63□□□□□ -0.23
CPSF3-204ENST00000489403 LRWD1Q9UFC0 647 aa13.63□□□□□ -0.23
CPSF3-204ENST00000489403 TNFSF13BQ9Y275 285 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms