RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 AGXTP21549 392 aa6.49□□□□□ -1.37
PTPN4-212ENST00000488896 ALDH1A3P47895 512 aa6.49□□□□□ -1.37
PTPN4-212ENST00000488896 CRB2Q5IJ48 1285 aa6.49□□□□□ -1.37
PTPN4-212ENST00000488896 RRP12Q5JTH9 1297 aaKnown RBP6.49□□□□□ -1.37
PTPN4-212ENST00000488896 MED25Q71SY5 747 aa6.49□□□□□ -1.37
PTPN4-212ENST00000488896 ULK2Q8IYT8 1036 aa6.49□□□□□ -1.37
PTPN4-212ENST00000488896 OR2I1PQ8NGU4 316 aa6.49□□□□□ -1.37
PTPN4-212ENST00000488896 HOXB13Q92826 284 aaPredicted RBP6.49□□□□□ -1.37
PTPN4-212ENST00000488896 PUS7LQ9H0K6 701 aaKnown RBP6.49□□□□□ -1.37
PTPN4-212ENST00000488896 MKS1Q9NXB0 559 aa6.49□□□□□ -1.37
PTPN4-212ENST00000488896 INTUQ9ULD6 942 aa6.49□□□□□ -1.37
PTPN4-212ENST00000488896 CENPVL1A0A0U1RR11 272 aa6.48□□□□□ -1.37
PTPN4-212ENST00000488896 UNC119BA6NIH7 251 aa6.48□□□□□ -1.37
PTPN4-212ENST00000488896 PJA2O43164 708 aa6.48□□□□□ -1.37
PTPN4-212ENST00000488896 ENDOD1O94919 500 aa6.48□□□□□ -1.37
PTPN4-212ENST00000488896 MYBL2P10244 700 aa6.48□□□□□ -1.37
PTPN4-212ENST00000488896 IL2RBP14784 551 aa6.48□□□□□ -1.37
PTPN4-212ENST00000488896 ATP5JP18859 108 aa6.48□□□□□ -1.37
PTPN4-212ENST00000488896 CDKN1CP49918 316 aaPredicted RBP6.48□□□□□ -1.37
PTPN4-212ENST00000488896 GUCY2FP51841 1108 aa6.48□□□□□ -1.37
PTPN4-212ENST00000488896 EVA1CP58658 441 aa6.48□□□□□ -1.37
PTPN4-212ENST00000488896 ITKQ08881 620 aa6.48□□□□□ -1.37
PTPN4-212ENST00000488896 SP140Q13342 867 aa6.48□□□□□ -1.37
PTPN4-212ENST00000488896 FAM102AQ5T9C2 384 aaPredicted RBP6.48□□□□□ -1.37
PTPN4-212ENST00000488896 Q6ZPA2 131 aa6.48□□□□□ -1.37
PTPN4-212ENST00000488896 RHOUQ7L0Q8 258 aa6.48□□□□□ -1.37
PTPN4-212ENST00000488896 NRG4Q8WWG1 115 aa6.48□□□□□ -1.37
PTPN4-212ENST00000488896 MTMR8Q96EF0 704 aa6.48□□□□□ -1.37
PTPN4-212ENST00000488896 NEU1Q99519 415 aa6.48□□□□□ -1.37
PTPN4-212ENST00000488896 MYOCQ99972 504 aa6.48□□□□□ -1.37
PTPN4-212ENST00000488896 CCDC8Q9H0W5 538 aaPredicted RBP6.48□□□□□ -1.37
PTPN4-212ENST00000488896 TMEM140Q9NV12 185 aa6.48□□□□□ -1.37
PTPN4-212ENST00000488896 MOCS1Q9NZB8 636 aa6.48□□□□□ -1.37
PTPN4-212ENST00000488896 SIK3Q9Y2K2 1263 aa6.48□□□□□ -1.37
PTPN4-212ENST00000488896 ACTL7AQ9Y615 435 aa6.48□□□□□ -1.37
PTPN4-212ENST00000488896 TMEM191CA6NGB0 347 aa6.47□□□□□ -1.37
PTPN4-212ENST00000488896 K7ESF4 209 aa6.47□□□□□ -1.37
PTPN4-212ENST00000488896 SPATA31D3P0C874 917 aa6.47□□□□□ -1.37
PTPN4-212ENST00000488896 CDK11BP21127 795 aaKnown RBP6.47□□□□□ -1.37
PTPN4-212ENST00000488896 SLC6A9P48067 706 aa6.47□□□□□ -1.37
PTPN4-212ENST00000488896 MGAT2Q10469 447 aa6.47□□□□□ -1.37
PTPN4-212ENST00000488896 ABCB5Q2M3G0 1257 aa6.47□□□□□ -1.37
PTPN4-212ENST00000488896 GJC2Q5T442 439 aaPredicted RBP6.47□□□□□ -1.37
PTPN4-212ENST00000488896 TSHZ3Q63HK5 1081 aa6.47□□□□□ -1.37
PTPN4-212ENST00000488896 ZNF529Q6P280 563 aa6.47□□□□□ -1.37
PTPN4-212ENST00000488896 SPATA31D4Q6ZUB0 917 aa6.47□□□□□ -1.37
PTPN4-212ENST00000488896 NECAB2Q7Z6G3 386 aa6.47□□□□□ -1.37
PTPN4-212ENST00000488896 PLXDC1Q8IUK5 500 aa6.47□□□□□ -1.37
PTPN4-212ENST00000488896 RAB24Q969Q5 203 aa6.47□□□□□ -1.37
PTPN4-212ENST00000488896 MYEOVQ96EZ4 313 aa6.47□□□□□ -1.37
PTPN4-212ENST00000488896 PRRX2Q99811 253 aa6.47□□□□□ -1.37
PTPN4-212ENST00000488896 TRHDEQ9UKU6 1024 aa6.47□□□□□ -1.37
PTPN4-212ENST00000488896 CADPSQ9ULU8 1353 aa6.46□□□□□ -1.37
PTPN4-212ENST00000488896 DIRC3C9JPN6 131 aa6.46□□□□□ -1.38
PTPN4-212ENST00000488896 FOXN1O15353 648 aa6.46□□□□□ -1.38
PTPN4-212ENST00000488896 XPOTO43592 962 aaKnown RBP6.46□□□□□ -1.38
PTPN4-212ENST00000488896 PPFIA4O75335 1185 aa6.46□□□□□ -1.38
PTPN4-212ENST00000488896 KATNA1O75449 491 aa6.46□□□□□ -1.38
PTPN4-212ENST00000488896 PCSK1P29120 753 aa6.46□□□□□ -1.38
PTPN4-212ENST00000488896 GUCY1A2P33402 732 aa6.46□□□□□ -1.38
PTPN4-212ENST00000488896 METRNLQ641Q3 311 aa6.46□□□□□ -1.38
PTPN4-212ENST00000488896 UBE3BQ7Z3V4 1068 aa6.46□□□□□ -1.38
PTPN4-212ENST00000488896 RHOT1Q8IXI2 618 aa6.46□□□□□ -1.38
PTPN4-212ENST00000488896 CBARPQ8N350 705 aaPredicted RBP6.46□□□□□ -1.38
PTPN4-212ENST00000488896 CPEB3Q8NE35 698 aaKnown RBP6.46□□□□□ -1.38
PTPN4-212ENST00000488896 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.46□□□□□ -1.38
PTPN4-212ENST00000488896 C1orf162Q8NEQ5 155 aaPredicted RBP6.46□□□□□ -1.38
PTPN4-212ENST00000488896 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.46□□□□□ -1.38
PTPN4-212ENST00000488896 C7orf25Q9BPX7 421 aa6.46□□□□□ -1.38
PTPN4-212ENST00000488896 WDR11Q9BZH6 1224 aa6.46□□□□□ -1.38
PTPN4-212ENST00000488896 ZNF277Q9NRM2 450 aaPredicted RBP6.46□□□□□ -1.38
PTPN4-212ENST00000488896 C11orf21Q9P2W6 132 aa6.46□□□□□ -1.38
PTPN4-212ENST00000488896 ATP11BQ9Y2G3 1177 aa6.46□□□□□ -1.38
PTPN4-212ENST00000488896 DMRT1Q9Y5R6 373 aa6.46□□□□□ -1.38
PTPN4-212ENST00000488896 HS3ST4Q9Y661 456 aa6.46□□□□□ -1.38
PTPN4-212ENST00000488896 GAGE12BA1L429 117 aa6.45□□□□□ -1.38
PTPN4-212ENST00000488896 GAGE12HA6NDE8 117 aa6.45□□□□□ -1.38
PTPN4-212ENST00000488896 FAM171A2A8MVW0 826 aa6.45□□□□□ -1.38
PTPN4-212ENST00000488896 GPR32O75388 356 aa6.45□□□□□ -1.38
PTPN4-212ENST00000488896 POMCP01189 267 aa6.45□□□□□ -1.38
PTPN4-212ENST00000488896 SLC6A2P23975 617 aa6.45□□□□□ -1.38
PTPN4-212ENST00000488896 AMPD3Q01432 767 aa6.45□□□□□ -1.38
PTPN4-212ENST00000488896 MTMR1Q13613 665 aa6.45□□□□□ -1.38
PTPN4-212ENST00000488896 BEAN1Q3B7T3 259 aa6.45□□□□□ -1.38
PTPN4-212ENST00000488896 SYDE2Q5VT97 1194 aa6.45□□□□□ -1.38
PTPN4-212ENST00000488896 ZGPATQ8N5A5 531 aaKnown RBP6.45□□□□□ -1.38
PTPN4-212ENST00000488896 OR56A1Q8NGH5 318 aa6.45□□□□□ -1.38
PTPN4-212ENST00000488896 JADE3Q92613 823 aa6.45□□□□□ -1.38
PTPN4-212ENST00000488896 FAXDC2Q96IV6 333 aa6.45□□□□□ -1.38
PTPN4-212ENST00000488896 ZSWIM1Q9BR11 485 aa6.45□□□□□ -1.38
PTPN4-212ENST00000488896 CYP4F11Q9HBI6 524 aa6.45□□□□□ -1.38
PTPN4-212ENST00000488896 FPGT-TNNI3KV9GXZ4 949 aa6.45□□□□□ -1.38
PTPN4-212ENST00000488896 TRIM75PA6NK02 468 aa6.44□□□□□ -1.38
PTPN4-212ENST00000488896 NDUFS2O75306 463 aa6.44□□□□□ -1.38
PTPN4-212ENST00000488896 AMY1AP04745 511 aa6.44□□□□□ -1.38
PTPN4-212ENST00000488896 DDX6P26196 483 aaKnown RBP eCLIP6.44□□□□□ -1.38
PTPN4-212ENST00000488896 RESTQ13127 1097 aa6.44□□□□□ -1.38
PTPN4-212ENST00000488896 UBXN2BQ14CS0 331 aa6.44□□□□□ -1.38
PTPN4-212ENST00000488896 AGAP9Q5VTM2 703 aa6.44□□□□□ -1.38
PTPN4-212ENST00000488896 DRC7Q8IY82 874 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms