RNA–Protein interactions for RNA: ENST00000488683.1

CLIC4-202, Transcript of chloride intracellular channel 4, humanhuman

TSL 2

Gene CLIC4, Length 2,723 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIC4-202ENST00000488683 PXMP2Q9NR77 195 aa13.59□□□□□ -0.23
CLIC4-202ENST00000488683 TBC1D22BQ9NU19 505 aa13.59□□□□□ -0.23
CLIC4-202ENST00000488683 COL11A1P12107 1806 aaPredicted RBP13.59□□□□□ -0.23
CLIC4-202ENST00000488683 TCF4P15884 667 aa13.58□□□□□ -0.24
CLIC4-202ENST00000488683 BIRC3Q13489 604 aa13.58□□□□□ -0.24
CLIC4-202ENST00000488683 SIX1Q15475 284 aaPredicted RBP13.58□□□□□ -0.24
CLIC4-202ENST00000488683 SEL1L2Q5TEA6 688 aa13.58□□□□□ -0.24
CLIC4-202ENST00000488683 RUFY4Q6ZNE9 571 aa13.58□□□□□ -0.24
CLIC4-202ENST00000488683 TAS1R3Q7RTX0 852 aa13.58□□□□□ -0.24
CLIC4-202ENST00000488683 CCDC60Q8IWA6 550 aaPredicted RBP13.58□□□□□ -0.24
CLIC4-202ENST00000488683 UBL4BQ8N7F7 174 aa13.58□□□□□ -0.24
CLIC4-202ENST00000488683 NAP1L3Q99457 506 aaPredicted RBP13.58□□□□□ -0.24
CLIC4-202ENST00000488683 RAB20Q9NX57 234 aa13.58□□□□□ -0.24
CLIC4-202ENST00000488683 TBK1Q9UHD2 729 aa13.58□□□□□ -0.24
CLIC4-202ENST00000488683 PCDHA3Q9Y5H8 950 aa13.58□□□□□ -0.24
CLIC4-202ENST00000488683 PARP14Q460N5 1801 aa13.58□□□□□ -0.24
CLIC4-202ENST00000488683 TTLL13PA6NNM8 815 aa13.58□□□□□ -0.24
CLIC4-202ENST00000488683 DNM1LO00429 736 aa13.58□□□□□ -0.24
CLIC4-202ENST00000488683 TRAPPC3O43617 180 aa13.58□□□□□ -0.24
CLIC4-202ENST00000488683 CTNND1O60716 968 aaKnown RBP13.58□□□□□ -0.24
CLIC4-202ENST00000488683 EDN1P05305 212 aa13.58□□□□□ -0.24
CLIC4-202ENST00000488683 CTNNA2P26232 953 aa13.58□□□□□ -0.24
CLIC4-202ENST00000488683 TCEAL1Q15170 157 aa13.58□□□□□ -0.24
CLIC4-202ENST00000488683 DEFB132Q7Z7B7 95 aa13.58□□□□□ -0.24
CLIC4-202ENST00000488683 MAP4K3Q8IVH8 894 aa13.58□□□□□ -0.24
CLIC4-202ENST00000488683 TAB3Q8N5C8 712 aaPredicted RBP13.58□□□□□ -0.24
CLIC4-202ENST00000488683 PRMT1Q99873 361 aaKnown RBP13.58□□□□□ -0.24
CLIC4-202ENST00000488683 JPH2Q9BR39 696 aaPredicted RBP13.58□□□□□ -0.24
CLIC4-202ENST00000488683 OSBPL7Q9BZF2 842 aa13.58□□□□□ -0.24
CLIC4-202ENST00000488683 HAPLN2Q9GZV7 340 aa13.58□□□□□ -0.24
CLIC4-202ENST00000488683 ZNRF3Q9ULT6 936 aa13.58□□□□□ -0.24
CLIC4-202ENST00000488683 GJA3Q9Y6H8 435 aa13.58□□□□□ -0.24
CLIC4-202ENST00000488683 ARID2Q68CP9 1835 aa13.58□□□□□ -0.24
CLIC4-202ENST00000488683 MIF4GDA9UHW6 222 aaKnown RBP13.57□□□□□ -0.24
CLIC4-202ENST00000488683 WDR64B1ANS9 1081 aa13.57□□□□□ -0.24
CLIC4-202ENST00000488683 PI4K2BG5E9Z4 385 aa13.57□□□□□ -0.24
CLIC4-202ENST00000488683 MAPK13O15264 365 aa13.57□□□□□ -0.24
CLIC4-202ENST00000488683 GRIN3BO60391 1043 aa13.57□□□□□ -0.24
CLIC4-202ENST00000488683 GZMAP12544 262 aa13.57□□□□□ -0.24
CLIC4-202ENST00000488683 HNRNPH1P31943 449 aaKnown RBP13.57□□□□□ -0.24
CLIC4-202ENST00000488683 COILP38432 576 aaPredicted RBP13.57□□□□□ -0.24
CLIC4-202ENST00000488683 PDE6CP51160 858 aa13.57□□□□□ -0.24
CLIC4-202ENST00000488683 HMGCS2P54868 508 aa13.57□□□□□ -0.24
CLIC4-202ENST00000488683 NLRP11P59045 1033 aaKnown RBP13.57□□□□□ -0.24
CLIC4-202ENST00000488683 DMP1Q13316 513 aaPredicted RBP13.57□□□□□ -0.24
CLIC4-202ENST00000488683 DHX34Q14147 1143 aaKnown RBP13.57□□□□□ -0.24
CLIC4-202ENST00000488683 PPP1R7Q15435 360 aa13.57□□□□□ -0.24
CLIC4-202ENST00000488683 AGBL2Q5U5Z8 902 aa13.57□□□□□ -0.24
CLIC4-202ENST00000488683 DENND2CQ68D51 928 aa13.57□□□□□ -0.24
CLIC4-202ENST00000488683 KRT39Q6A163 491 aa13.57□□□□□ -0.24
CLIC4-202ENST00000488683 CAPN12Q6ZSI9 719 aa13.57□□□□□ -0.24
CLIC4-202ENST00000488683 SLC13A5Q86YT5 568 aaPredicted RBP13.57□□□□□ -0.24
CLIC4-202ENST00000488683 DDX1Q92499 740 aaKnown RBP13.57□□□□□ -0.24
CLIC4-202ENST00000488683 SEC16BQ96JE7 1060 aa13.57□□□□□ -0.24
CLIC4-202ENST00000488683 ADAM7Q9H2U9 754 aa13.57□□□□□ -0.24
CLIC4-202ENST00000488683 RNF146Q9NTX7 359 aa13.57□□□□□ -0.24
CLIC4-202ENST00000488683 ANKFY1Q9P2R3 1169 aa13.57□□□□□ -0.24
CLIC4-202ENST00000488683 FAM187AA6NFU0 413 aa13.57□□□□□ -0.24
CLIC4-202ENST00000488683 PIAS1O75925 651 aa13.57□□□□□ -0.24
CLIC4-202ENST00000488683 MTA2O94776 668 aa13.57□□□□□ -0.24
CLIC4-202ENST00000488683 CD58P19256 250 aa13.57□□□□□ -0.24
CLIC4-202ENST00000488683 MFAP3P55082 362 aa13.57□□□□□ -0.24
CLIC4-202ENST00000488683 SP2Q02086 613 aa13.57□□□□□ -0.24
CLIC4-202ENST00000488683 ZNF394Q53GI3 561 aa13.57□□□□□ -0.24
CLIC4-202ENST00000488683 SNRNP48Q6IEG0 339 aaKnown RBP13.57□□□□□ -0.24
CLIC4-202ENST00000488683 CPLX4Q7Z7G2 160 aa13.57□□□□□ -0.24
CLIC4-202ENST00000488683 NIM1KQ8IY84 436 aa13.57□□□□□ -0.24
CLIC4-202ENST00000488683 AGBL3Q8NEM8 1001 aa13.57□□□□□ -0.24
CLIC4-202ENST00000488683 LPAR1Q92633 364 aa13.57□□□□□ -0.24
CLIC4-202ENST00000488683 ZBTB10Q96DT7 871 aa13.57□□□□□ -0.24
CLIC4-202ENST00000488683 KIAA1683Q9H0B3 1180 aa13.57□□□□□ -0.24
CLIC4-202ENST00000488683 XPNPEP1Q9NQW7 623 aa13.57□□□□□ -0.24
CLIC4-202ENST00000488683 CD2APQ9Y5K6 639 aa13.57□□□□□ -0.24
CLIC4-202ENST00000488683 PMM2O15305 246 aa13.56□□□□□ -0.24
CLIC4-202ENST00000488683 TP73O15350 636 aa13.56□□□□□ -0.24
CLIC4-202ENST00000488683 CPP00450 1065 aa13.56□□□□□ -0.24
CLIC4-202ENST00000488683 TNNI1P19237 187 aa13.56□□□□□ -0.24
CLIC4-202ENST00000488683 FNTAP49354 379 aa13.56□□□□□ -0.24
CLIC4-202ENST00000488683 KRT17Q04695 432 aa13.56□□□□□ -0.24
CLIC4-202ENST00000488683 ADCY2Q08462 1091 aa13.56□□□□□ -0.24
CLIC4-202ENST00000488683 EEPD1Q7L9B9 569 aa13.56□□□□□ -0.24
CLIC4-202ENST00000488683 CCDC50Q8IVM0 306 aa13.56□□□□□ -0.24
CLIC4-202ENST00000488683 FBXL13Q8NEE6 735 aa13.56□□□□□ -0.24
CLIC4-202ENST00000488683 SPIRE2Q8WWL2 714 aa13.56□□□□□ -0.24
CLIC4-202ENST00000488683 MRRFQ96E11 262 aaKnown RBP13.56□□□□□ -0.24
CLIC4-202ENST00000488683 CCDC114Q96M63 670 aa13.56□□□□□ -0.24
CLIC4-202ENST00000488683 RPS6KC1Q96S38 1066 aa13.56□□□□□ -0.24
CLIC4-202ENST00000488683 C11orf70Q9BRQ4 267 aa13.56□□□□□ -0.24
CLIC4-202ENST00000488683 PABPC3Q9H361 631 aaKnown RBP13.56□□□□□ -0.24
CLIC4-202ENST00000488683 CD248Q9HCU0 757 aa13.56□□□□□ -0.24
CLIC4-202ENST00000488683 PCYOX1Q9UHG3 505 aa13.56□□□□□ -0.24
CLIC4-202ENST00000488683 COQ4Q9Y3A0 265 aa13.56□□□□□ -0.24
CLIC4-202ENST00000488683 RGPD3A6NKT7 1758 aaPredicted RBP13.56□□□□□ -0.24
CLIC4-202ENST00000488683 RGPD4Q7Z3J3 1758 aa13.56□□□□□ -0.24
CLIC4-202ENST00000488683 MROH7Q68CQ1 1323 aa13.56□□□□□ -0.24
CLIC4-202ENST00000488683 CYP1A2P05177 515 aa13.56□□□□□ -0.24
CLIC4-202ENST00000488683 NR3C2P08235 984 aa13.56□□□□□ -0.24
CLIC4-202ENST00000488683 CHRNA3P32297 505 aa13.56□□□□□ -0.24
CLIC4-202ENST00000488683 GPC3P51654 580 aa13.56□□□□□ -0.24
CLIC4-202ENST00000488683 CDR2Q01850 454 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms