RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 MAGEC2Q9UBF1 373 aaPredicted RBP4.97□□□□□ -1.61
SMC4-220ENST00000488017 A0A1B0GTW7 788 aa4.96□□□□□ -1.62
SMC4-220ENST00000488017 CTSSP25774 331 aa4.96□□□□□ -1.62
SMC4-220ENST00000488017 LSP1P33241 339 aa4.96□□□□□ -1.62
SMC4-220ENST00000488017 CXADRP78310 365 aa4.96□□□□□ -1.62
SMC4-220ENST00000488017 ZNF425Q6IV72 752 aa4.96□□□□□ -1.62
SMC4-220ENST00000488017 LYSMD2Q8IV50 215 aa4.96□□□□□ -1.62
SMC4-220ENST00000488017 SLC35B2Q8TB61 432 aa4.96□□□□□ -1.62
SMC4-220ENST00000488017 CHTF18Q8WVB6 975 aa4.96□□□□□ -1.62
SMC4-220ENST00000488017 WASF1Q92558 559 aa4.96□□□□□ -1.62
SMC4-220ENST00000488017 RNF31Q96EP0 1072 aa4.96□□□□□ -1.62
SMC4-220ENST00000488017 PHACTR3Q96KR7 559 aa4.96□□□□□ -1.62
SMC4-220ENST00000488017 PPP2R3BQ9Y5P8 575 aa4.96□□□□□ -1.62
SMC4-220ENST00000488017 POLR2AP24928 1970 aaKnown RBP4.95□□□□□ -1.62
SMC4-220ENST00000488017 SETD1BQ9UPS6 1966 aaKnown RBP4.95□□□□□ -1.62
SMC4-220ENST00000488017 CXorf49A8MYA2 514 aaPredicted RBP4.95□□□□□ -1.62
SMC4-220ENST00000488017 PROK1P58294 105 aa4.95□□□□□ -1.62
SMC4-220ENST00000488017 THNSL2Q86YJ6 484 aa4.95□□□□□ -1.62
SMC4-220ENST00000488017 DRC7Q8IY82 874 aa4.95□□□□□ -1.62
SMC4-220ENST00000488017 TIMP4Q99727 224 aa4.95□□□□□ -1.62
SMC4-220ENST00000488017 THG1LQ9NWX6 298 aaKnown RBP4.95□□□□□ -1.62
SMC4-220ENST00000488017 KCTD5Q9NXV2 234 aa4.95□□□□□ -1.62
SMC4-220ENST00000488017 KCNG1Q9UIX4 513 aa4.95□□□□□ -1.62
SMC4-220ENST00000488017 KCNE5Q9UJ90 142 aa4.95□□□□□ -1.62
SMC4-220ENST00000488017 PHF2O75151 1096 aa4.94□□□□□ -1.62
SMC4-220ENST00000488017 KPNA1P52294 538 aaPredicted RBP4.94□□□□□ -1.62
SMC4-220ENST00000488017 MANFP55145 182 aaKnown RBP4.94□□□□□ -1.62
SMC4-220ENST00000488017 AKNAD1Q5T1N1 836 aa4.94□□□□□ -1.62
SMC4-220ENST00000488017 FRMD7Q6ZUT3 714 aa4.94□□□□□ -1.62
SMC4-220ENST00000488017 MED25Q71SY5 747 aa4.94□□□□□ -1.62
SMC4-220ENST00000488017 NXPE1Q8N323 547 aa4.94□□□□□ -1.62
SMC4-220ENST00000488017 LNX2Q8N448 690 aa4.94□□□□□ -1.62
SMC4-220ENST00000488017 CDY2AQ9Y6F7 541 aa4.94□□□□□ -1.62
SMC4-220ENST00000488017 WDR91A4D1P6 747 aa4.93□□□□□ -1.62
SMC4-220ENST00000488017 WIPF3A6NGB9 483 aa4.93□□□□□ -1.62
SMC4-220ENST00000488017 KCNAB3O43448 404 aa4.93□□□□□ -1.62
SMC4-220ENST00000488017 WT1P19544 449 aaPredicted RBP4.93□□□□□ -1.62
SMC4-220ENST00000488017 POU3F2P20265 443 aaPredicted RBP4.93□□□□□ -1.62
SMC4-220ENST00000488017 FGFR4P22455 802 aa4.93□□□□□ -1.62
SMC4-220ENST00000488017 OCRLQ01968 901 aa4.93□□□□□ -1.62
SMC4-220ENST00000488017 TRIM25Q14258 630 aaKnown RBP4.93□□□□□ -1.62
SMC4-220ENST00000488017 RRP12Q5JTH9 1297 aaKnown RBP4.93□□□□□ -1.62
SMC4-220ENST00000488017 ZNF572Q7Z3I7 529 aaPredicted RBP4.93□□□□□ -1.62
SMC4-220ENST00000488017 ZSWIM1Q9BR11 485 aa4.93□□□□□ -1.62
SMC4-220ENST00000488017 ASB6Q9NWX5 421 aa4.93□□□□□ -1.62
SMC4-220ENST00000488017 FAM30AQ9NZY2 134 aa4.93□□□□□ -1.62
SMC4-220ENST00000488017 RPTORQ8N122 1335 aa4.93□□□□□ -1.62
SMC4-220ENST00000488017 ZNF891A8MT65 544 aaPredicted RBP4.92□□□□□ -1.62
SMC4-220ENST00000488017 GPANK1O95872 356 aa4.92□□□□□ -1.62
SMC4-220ENST00000488017 CELA2AP08217 269 aa4.92□□□□□ -1.62
SMC4-220ENST00000488017 GCSHP23434 173 aa4.92□□□□□ -1.62
SMC4-220ENST00000488017 PABPC4Q13310 644 aaKnown RBP eCLIP4.92□□□□□ -1.62
SMC4-220ENST00000488017 TERF2Q15554 542 aa4.92□□□□□ -1.62
SMC4-220ENST00000488017 CYP2A13Q16696 494 aa4.92□□□□□ -1.62
SMC4-220ENST00000488017 NACC2Q96BF6 587 aa4.92□□□□□ -1.62
SMC4-220ENST00000488017 SARAFQ96BY9 339 aa4.92□□□□□ -1.62
SMC4-220ENST00000488017 PTCD3Q96EY7 689 aaKnown RBP4.92□□□□□ -1.62
SMC4-220ENST00000488017 ANO3Q9BYT9 981 aa4.92□□□□□ -1.62
SMC4-220ENST00000488017 ENTPD2Q9Y5L3 495 aa4.92□□□□□ -1.62
SMC4-220ENST00000488017 PNPLA7Q6ZV29 1317 aa4.92□□□□□ -1.62
SMC4-220ENST00000488017 ORC4O43929 436 aa4.91□□□□□ -1.62
SMC4-220ENST00000488017 PTPN7P35236 360 aa4.91□□□□□ -1.62
SMC4-220ENST00000488017 VAV2P52735 878 aa4.91□□□□□ -1.62
SMC4-220ENST00000488017 SP140Q13342 867 aa4.91□□□□□ -1.62
SMC4-220ENST00000488017 SQSTM1Q13501 440 aa4.91□□□□□ -1.62
SMC4-220ENST00000488017 MST1LQ2TV78 715 aa4.91□□□□□ -1.62
SMC4-220ENST00000488017 GJC2Q5T442 439 aaPredicted RBP4.91□□□□□ -1.62
SMC4-220ENST00000488017 FOXR2Q6PJQ5 311 aa4.91□□□□□ -1.62
SMC4-220ENST00000488017 COLGALT2Q8IYK4 626 aa4.91□□□□□ -1.62
SMC4-220ENST00000488017 HASPINQ8TF76 798 aa4.91□□□□□ -1.62
SMC4-220ENST00000488017 UNKLQ9H9P5 680 aaKnown RBP4.91□□□□□ -1.62
SMC4-220ENST00000488017 ATRNL1Q5VV63 1379 aa4.91□□□□□ -1.62
SMC4-220ENST00000488017 LCHNA4D1U4 455 aa4.9□□□□□ -1.63
SMC4-220ENST00000488017 CCDC151A5D8V7 595 aa4.9□□□□□ -1.63
SMC4-220ENST00000488017 PPP1R12AO14974 1030 aaPredicted RBP4.9□□□□□ -1.63
SMC4-220ENST00000488017 ADCY6O43306 1168 aa4.9□□□□□ -1.63
SMC4-220ENST00000488017 PEX1O43933 1283 aa4.9□□□□□ -1.63
SMC4-220ENST00000488017 KPNA6O60684 536 aa4.9□□□□□ -1.63
SMC4-220ENST00000488017 ERN1O75460 977 aaKnown RBP4.9□□□□□ -1.63
SMC4-220ENST00000488017 ALOX15P16050 662 aaPredicted RBP4.9□□□□□ -1.63
SMC4-220ENST00000488017 GPD1P21695 349 aa4.9□□□□□ -1.63
SMC4-220ENST00000488017 FOLR3P41439 243 aa4.9□□□□□ -1.63
SMC4-220ENST00000488017 SOX10P56693 466 aa4.9□□□□□ -1.63
SMC4-220ENST00000488017 RAP2BP61225 183 aa4.9□□□□□ -1.63
SMC4-220ENST00000488017 EZH2Q15910 746 aaKnown RBP4.9□□□□□ -1.63
SMC4-220ENST00000488017 KRTAP5-1Q6L8H4 278 aa4.9□□□□□ -1.63
SMC4-220ENST00000488017 TRMT2AQ8IZ69 625 aaKnown RBP4.9□□□□□ -1.63
SMC4-220ENST00000488017 SMC1BQ8NDV3 1235 aa4.9□□□□□ -1.63
SMC4-220ENST00000488017 SPATA3Q8NHX4 192 aa4.9□□□□□ -1.63
SMC4-220ENST00000488017 IL17RBQ9NRM6 502 aa4.9□□□□□ -1.63
SMC4-220ENST00000488017 KDM1AO60341 852 aa4.89□□□□□ -1.63
SMC4-220ENST00000488017 POMCP01189 267 aa4.89□□□□□ -1.63
SMC4-220ENST00000488017 NEK4P51957 841 aa4.89□□□□□ -1.63
SMC4-220ENST00000488017 HSD11B2P80365 405 aa4.89□□□□□ -1.63
SMC4-220ENST00000488017 PITRM1Q5JRX3 1037 aa4.89□□□□□ -1.63
SMC4-220ENST00000488017 KIAA0895LQ68EN5 471 aa4.89□□□□□ -1.63
SMC4-220ENST00000488017 SYNPOQ8N3V7 929 aa4.89□□□□□ -1.63
SMC4-220ENST00000488017 PDPRQ8NCN5 879 aa4.89□□□□□ -1.63
SMC4-220ENST00000488017 REPS2Q8NFH8 660 aa4.89□□□□□ -1.63
SMC4-220ENST00000488017 OR7D4Q8NG98 312 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms