RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 LLGL2Q6P1M3 1020 aa19.22■□□□□ 0.67
VIM-206ENST00000487938 CACNA2D3Q8IZS8 1091 aa19.22■□□□□ 0.67
VIM-206ENST00000487938 C3orf20Q8ND61 904 aa19.22■□□□□ 0.67
VIM-206ENST00000487938 PSPC1Q8WXF1 523 aaKnown RBP19.22■□□□□ 0.67
VIM-206ENST00000487938 FAM213AQ9BRX8 229 aa19.22■□□□□ 0.67
VIM-206ENST00000487938 OSBPL7Q9BZF2 842 aa19.22■□□□□ 0.67
VIM-206ENST00000487938 ADAM7Q9H2U9 754 aa19.22■□□□□ 0.67
VIM-206ENST00000487938 ANAPC7Q9UJX3 599 aa19.22■□□□□ 0.67
VIM-206ENST00000487938 ADGRA3Q8IWK6 1321 aa19.22■□□□□ 0.67
VIM-206ENST00000487938 GOLGA6L7A0A1B0GV03 622 aa19.22■□□□□ 0.67
VIM-206ENST00000487938 C5orf60A6NFR6 353 aa19.22■□□□□ 0.67
VIM-206ENST00000487938 ATP2C2O75185 946 aa19.22■□□□□ 0.67
VIM-206ENST00000487938 SFNP31947 248 aa19.22■□□□□ 0.67
VIM-206ENST00000487938 CDR1P51861 262 aa19.22■□□□□ 0.67
VIM-206ENST00000487938 BAATQ14032 418 aaPredicted RBP19.22■□□□□ 0.67
VIM-206ENST00000487938 CLEC16AQ2KHT3 1053 aa19.22■□□□□ 0.67
VIM-206ENST00000487938 C6orf118Q5T5N4 469 aa19.22■□□□□ 0.67
VIM-206ENST00000487938 CCDC13Q8IYE1 715 aa19.22■□□□□ 0.67
VIM-206ENST00000487938 SLC17A8Q8NDX2 589 aa19.22■□□□□ 0.67
VIM-206ENST00000487938 CPA5Q8WXQ8 436 aa19.22■□□□□ 0.67
VIM-206ENST00000487938 LPAR1Q92633 364 aa19.22■□□□□ 0.67
VIM-206ENST00000487938 CHMP6Q96FZ7 201 aa19.22■□□□□ 0.67
VIM-206ENST00000487938 MOV10L1Q9BXT6 1211 aaKnown RBP19.22■□□□□ 0.67
VIM-206ENST00000487938 CNOT7Q9UIV1 285 aaKnown RBP19.22■□□□□ 0.67
VIM-206ENST00000487938 PASKQ96RG2 1323 aa19.21■□□□□ 0.67
VIM-206ENST00000487938 ZNF862O60290 1169 aa19.21■□□□□ 0.67
VIM-206ENST00000487938 MAPK4P31152 587 aa19.21■□□□□ 0.67
VIM-206ENST00000487938 MMP13P45452 471 aa19.21■□□□□ 0.67
VIM-206ENST00000487938 MTMR2Q13614 643 aa19.21■□□□□ 0.67
VIM-206ENST00000487938 CCDC38Q502W7 563 aa19.21■□□□□ 0.67
VIM-206ENST00000487938 NLRX1Q86UT6 975 aa19.21■□□□□ 0.67
VIM-206ENST00000487938 FAM129AQ9BZQ8 928 aa19.21■□□□□ 0.67
VIM-206ENST00000487938 CCDC113Q9H0I3 377 aa19.21■□□□□ 0.67
VIM-206ENST00000487938 TAOK3Q9H2K8 898 aa19.21■□□□□ 0.67
VIM-206ENST00000487938 RPAP3Q9H6T3 665 aaPredicted RBP19.21■□□□□ 0.67
VIM-206ENST00000487938 PCDHA10Q9Y5I2 948 aa19.21■□□□□ 0.67
VIM-206ENST00000487938 PSME4Q14997 1843 aa19.21■□□□□ 0.67
VIM-206ENST00000487938 DNM1LO00429 736 aa19.21■□□□□ 0.67
VIM-206ENST00000487938 HNRNPDLO14979 420 aaKnown RBP19.21■□□□□ 0.67
VIM-206ENST00000487938 ECEL1O95672 775 aa19.21■□□□□ 0.67
VIM-206ENST00000487938 RARGP13631 454 aa19.21■□□□□ 0.67
VIM-206ENST00000487938 SCP2P22307 547 aa19.21■□□□□ 0.67
VIM-206ENST00000487938 GBP1P32455 592 aa19.21■□□□□ 0.67
VIM-206ENST00000487938 CXCL9Q07325 125 aa19.21■□□□□ 0.67
VIM-206ENST00000487938 TRIP13Q15645 432 aaPredicted RBP19.21■□□□□ 0.67
VIM-206ENST00000487938 SGO2Q562F6 1265 aa19.21■□□□□ 0.67
VIM-206ENST00000487938 GKAP1Q5VSY0 366 aaPredicted RBP19.21■□□□□ 0.67
VIM-206ENST00000487938 DAB2IPQ5VWQ8 1189 aa19.21■□□□□ 0.67
VIM-206ENST00000487938 SWSAP1Q6NVH7 229 aa19.21■□□□□ 0.67
VIM-206ENST00000487938 MTMR14Q8NCE2 650 aa19.21■□□□□ 0.67
VIM-206ENST00000487938 TMC2Q8TDI7 906 aa19.21■□□□□ 0.67
VIM-206ENST00000487938 ATG4AQ8WYN0 398 aa19.21■□□□□ 0.67
VIM-206ENST00000487938 ZNF516Q92618 1163 aa19.21■□□□□ 0.67
VIM-206ENST00000487938 BICD1Q96G01 975 aa19.21■□□□□ 0.67
VIM-206ENST00000487938 DDX23Q9BUQ8 820 aaKnown RBP19.21■□□□□ 0.67
VIM-206ENST00000487938 KIAA1683Q9H0B3 1180 aa19.21■□□□□ 0.67
VIM-206ENST00000487938 ZNRF3Q9ULT6 936 aa19.21■□□□□ 0.67
VIM-206ENST00000487938 ZBED4O75132 1171 aa19.2■□□□□ 0.66
VIM-206ENST00000487938 MCCD1P59942 119 aaPredicted RBP19.2■□□□□ 0.66
VIM-206ENST00000487938 ADCY2Q08462 1091 aa19.2■□□□□ 0.66
VIM-206ENST00000487938 SLMAPQ14BN4 828 aa19.2■□□□□ 0.66
VIM-206ENST00000487938 GPD1LQ8N335 351 aa19.2■□□□□ 0.66
VIM-206ENST00000487938 CENPTQ96BT3 561 aa19.2■□□□□ 0.66
VIM-206ENST00000487938 FBXL18Q96ME1 805 aa19.2■□□□□ 0.66
VIM-206ENST00000487938 NTPCRQ9BSD7 190 aaKnown RBP19.2■□□□□ 0.66
VIM-206ENST00000487938 LRRC19Q9H756 370 aa19.2■□□□□ 0.66
VIM-206ENST00000487938 CHST7Q9NS84 486 aa19.2■□□□□ 0.66
VIM-206ENST00000487938 ZNFX1Q9P2E3 1918 aaKnown RBP19.2■□□□□ 0.66
VIM-206ENST00000487938 RASGRF2O14827 1237 aa19.2■□□□□ 0.66
VIM-206ENST00000487938 SSTR3P32745 418 aaPredicted RBP19.2■□□□□ 0.66
VIM-206ENST00000487938 KRT17Q04695 432 aa19.2■□□□□ 0.66
VIM-206ENST00000487938 CALCOCO2Q13137 446 aa19.2■□□□□ 0.66
VIM-206ENST00000487938 CYFIP1Q7L576 1253 aa19.2■□□□□ 0.66
VIM-206ENST00000487938 OTUD6AQ7L8S5 288 aa19.2■□□□□ 0.66
VIM-206ENST00000487938 NIM1KQ8IY84 436 aa19.2■□□□□ 0.66
VIM-206ENST00000487938 AGBL3Q8NEM8 1001 aa19.2■□□□□ 0.66
VIM-206ENST00000487938 ATXN2LQ8WWM7 1075 aaKnown RBP19.2■□□□□ 0.66
VIM-206ENST00000487938 PRMT1Q99873 361 aaKnown RBP19.2■□□□□ 0.66
VIM-206ENST00000487938 HERPUD2Q9BSE4 406 aa19.2■□□□□ 0.66
VIM-206ENST00000487938 MYOZ2Q9NPC6 264 aa19.2■□□□□ 0.66
VIM-206ENST00000487938 DNAJC17Q9NVM6 304 aaKnown RBP19.2■□□□□ 0.66
VIM-206ENST00000487938 MAP3K20Q9NYL2 800 aaKnown RBP19.2■□□□□ 0.66
VIM-206ENST00000487938 FSCN2O14926 492 aa19.19■□□□□ 0.66
VIM-206ENST00000487938 EGFRP00533 1210 aa19.19■□□□□ 0.66
VIM-206ENST00000487938 DPEP1P16444 411 aa19.19■□□□□ 0.66
VIM-206ENST00000487938 RRM1P23921 792 aa19.19■□□□□ 0.66
VIM-206ENST00000487938 AUHQ13825 339 aaKnown RBP19.19■□□□□ 0.66
VIM-206ENST00000487938 SUGP1Q8IWZ8 645 aaKnown RBP19.19■□□□□ 0.66
VIM-206ENST00000487938 ATG4CQ96DT6 458 aa19.19■□□□□ 0.66
VIM-206ENST00000487938 ZBED3Q96IU2 234 aaPredicted RBP19.19■□□□□ 0.66
VIM-206ENST00000487938 CCDC114Q96M63 670 aa19.19■□□□□ 0.66
VIM-206ENST00000487938 MTFR1LQ9H019 292 aa19.19■□□□□ 0.66
VIM-206ENST00000487938 ACSL3O95573 720 aa19.18■□□□□ 0.66
VIM-206ENST00000487938 AGTP01019 485 aa19.18■□□□□ 0.66
VIM-206ENST00000487938 NR3C2P08235 984 aa19.18■□□□□ 0.66
VIM-206ENST00000487938 UNGP13051 313 aaPredicted RBP19.18■□□□□ 0.66
VIM-206ENST00000487938 GTF2A1P52655 376 aaPredicted RBP19.18■□□□□ 0.66
VIM-206ENST00000487938 LONRF1Q17RB8 773 aa19.18■□□□□ 0.66
VIM-206ENST00000487938 MCOLN2Q8IZK6 566 aa19.18■□□□□ 0.66
VIM-206ENST00000487938 C12orf50Q8NA57 414 aaPredicted RBP19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms