RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 SYN2Q92777 582 aaPredicted RBP17.38■□□□□ 0.37
COL7A1-210ENST00000487017 SLC24A3Q9HC58 644 aa17.38■□□□□ 0.37
COL7A1-210ENST00000487017 CARSP49589 748 aaKnown RBP17.38■□□□□ 0.37
COL7A1-210ENST00000487017 EFTUD2Q15029 972 aaKnown RBP eCLIP17.38■□□□□ 0.378e-7■■■■■ 37
COL7A1-210ENST00000487017 THEM5Q8N1Q8 247 aa17.38■□□□□ 0.37
COL7A1-210ENST00000487017 OLFM3Q96PB7 478 aa17.38■□□□□ 0.37
COL7A1-210ENST00000487017 ERGIC2Q96RQ1 377 aa17.38■□□□□ 0.37
COL7A1-210ENST00000487017 RBM15Q96T37 977 aaKnown RBP eCLIP17.38■□□□□ 0.37
COL7A1-210ENST00000487017 KIFC3Q9BVG8 833 aa17.38■□□□□ 0.37
COL7A1-210ENST00000487017 KCND2Q9NZV8 630 aa17.38■□□□□ 0.37
COL7A1-210ENST00000487017 SNX2O60749 519 aa17.38■□□□□ 0.37
COL7A1-210ENST00000487017 EFHC2Q5JST6 749 aa17.38■□□□□ 0.37
COL7A1-210ENST00000487017 CAPRIN2Q6IMN6 1127 aaKnown RBP17.38■□□□□ 0.37
COL7A1-210ENST00000487017 FRA10AC1Q70Z53 315 aa17.38■□□□□ 0.37
COL7A1-210ENST00000487017 JAMLQ86YT9 394 aa17.38■□□□□ 0.37
COL7A1-210ENST00000487017 SLC30A5Q8TAD4 765 aa17.38■□□□□ 0.37
COL7A1-210ENST00000487017 SLC26A7Q8TE54 656 aa17.38■□□□□ 0.37
COL7A1-210ENST00000487017 KCNB2Q92953 911 aa17.38■□□□□ 0.37
COL7A1-210ENST00000487017 NCLNQ969V3 563 aa17.38■□□□□ 0.37
COL7A1-210ENST00000487017 ADA2Q9NZK5 511 aa17.38■□□□□ 0.37
COL7A1-210ENST00000487017 PNMA3Q9UL41 463 aa17.38■□□□□ 0.37
COL7A1-210ENST00000487017 FDX1P10109 184 aa17.38■□□□□ 0.37
COL7A1-210ENST00000487017 IRAK1P51617 712 aa17.38■□□□□ 0.37
COL7A1-210ENST00000487017 GRIN1Q05586 938 aa17.38■□□□□ 0.37
COL7A1-210ENST00000487017 NSUN2Q08J23 767 aaKnown RBP eCLIP17.38■□□□□ 0.37
COL7A1-210ENST00000487017 DYNC1I2Q13409 638 aaKnown RBP17.38■□□□□ 0.37
COL7A1-210ENST00000487017 LMBRD2Q68DH5 695 aaPredicted RBP17.38■□□□□ 0.37
COL7A1-210ENST00000487017 ARHGAP18Q8N392 663 aa17.38■□□□□ 0.37
COL7A1-210ENST00000487017 MAGEB5Q9BZ81 275 aa17.38■□□□□ 0.37
COL7A1-210ENST00000487017 DBR1Q9UK59 544 aaKnown RBP17.38■□□□□ 0.37
COL7A1-210ENST00000487017 TMEM253P0C7T8 217 aa17.37■□□□□ 0.37
COL7A1-210ENST00000487017 SLC9A1P19634 815 aa17.37■□□□□ 0.37
COL7A1-210ENST00000487017 SP8Q8IXZ3 490 aa17.37■□□□□ 0.37
COL7A1-210ENST00000487017 TTC30BQ8N4P2 665 aa17.37■□□□□ 0.37
COL7A1-210ENST00000487017 MAP3K14Q99558 947 aa17.37■□□□□ 0.37
COL7A1-210ENST00000487017 PGM1P36871 562 aa17.37■□□□□ 0.37
COL7A1-210ENST00000487017 ZNF34Q8IZ26 560 aa17.37■□□□□ 0.37
COL7A1-210ENST00000487017 WRNIP1Q96S55 665 aa17.37■□□□□ 0.37
COL7A1-210ENST00000487017 POU5F1BQ06416 359 aa17.37■□□□□ 0.37
COL7A1-210ENST00000487017 SGSM3Q96HU1 749 aa17.37■□□□□ 0.37
COL7A1-210ENST00000487017 ALG13Q9NP73 1137 aaKnown RBP17.37■□□□□ 0.37
COL7A1-210ENST00000487017 KLHL11Q9NVR0 708 aa17.37■□□□□ 0.37
COL7A1-210ENST00000487017 LMCD1Q9NZU5 365 aa17.37■□□□□ 0.37
COL7A1-210ENST00000487017 H3BRJ5 948 aa17.37■□□□□ 0.37
COL7A1-210ENST00000487017 IFT43Q96FT9 208 aa17.37■□□□□ 0.37
COL7A1-210ENST00000487017 SENP7Q9BQF6 1050 aa17.37■□□□□ 0.37
COL7A1-210ENST00000487017 ACAD9Q9H845 621 aa17.37■□□□□ 0.37
COL7A1-210ENST00000487017 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.37■□□□□ 0.37
COL7A1-210ENST00000487017 ERCC6L2Q5T890 1561 aa17.36■□□□□ 0.37
COL7A1-210ENST00000487017 EIF2AQ9BY44 585 aaKnown RBP17.36■□□□□ 0.37
COL7A1-210ENST00000487017 PTPRMP28827 1452 aa17.36■□□□□ 0.37
COL7A1-210ENST00000487017 LMTK2Q8IWU2 1503 aa17.36■□□□□ 0.37
COL7A1-210ENST00000487017 FXR2P51116 673 aaKnown RBP eCLIP17.36■□□□□ 0.37
COL7A1-210ENST00000487017 CPA5Q8WXQ8 436 aa17.36■□□□□ 0.37
COL7A1-210ENST00000487017 CYFIP2Q96F07 1278 aa17.36■□□□□ 0.37
COL7A1-210ENST00000487017 DAGLAQ9Y4D2 1042 aa17.36■□□□□ 0.37
COL7A1-210ENST00000487017 F8W8V4 182 aa17.36■□□□□ 0.37
COL7A1-210ENST00000487017 AGGF1Q8N302 714 aaeCLIP17.36■□□□□ 0.37
COL7A1-210ENST00000487017 ING2Q9H160 280 aa17.36■□□□□ 0.37
COL7A1-210ENST00000487017 NEXMIFQ5QGS0 1516 aa17.36■□□□□ 0.37
COL7A1-210ENST00000487017 RASSF10A6NK89 507 aa17.36■□□□□ 0.37
COL7A1-210ENST00000487017 EIF4E1BA6NMX2 242 aaKnown RBP17.36■□□□□ 0.37
COL7A1-210ENST00000487017 NFX1Q12986 1120 aaKnown RBP17.36■□□□□ 0.37
COL7A1-210ENST00000487017 HIC1Q14526 733 aa17.36■□□□□ 0.37
COL7A1-210ENST00000487017 C16orf86Q6ZW13 317 aa17.36■□□□□ 0.37
COL7A1-210ENST00000487017 ANKS1AQ92625 1134 aa17.36■□□□□ 0.37
COL7A1-210ENST00000487017 ROPN1BQ9BZX4 212 aaPredicted RBP17.36■□□□□ 0.37
COL7A1-210ENST00000487017 ROPN1Q9HAT0 212 aaPredicted RBP17.36■□□□□ 0.37
COL7A1-210ENST00000487017 ARHGDIAP52565 204 aa17.36■□□□□ 0.37
COL7A1-210ENST00000487017 EFNA5P52803 228 aa17.36■□□□□ 0.37
COL7A1-210ENST00000487017 PTPAQ15257 358 aa17.36■□□□□ 0.37
COL7A1-210ENST00000487017 SF3B3Q15393 1217 aaKnown RBP17.36■□□□□ 0.37
COL7A1-210ENST00000487017 RBM43Q6ZSC3 357 aaKnown RBP17.36■□□□□ 0.37
COL7A1-210ENST00000487017 POLR3CQ9BUI4 534 aaPredicted RBP17.36■□□□□ 0.37
COL7A1-210ENST00000487017 PSMC3IPQ9P2W1 217 aaPredicted RBP17.36■□□□□ 0.37
COL7A1-210ENST00000487017 RNF103-CHMP3A0A140T963 221 aa17.35■□□□□ 0.37
COL7A1-210ENST00000487017 GOLGA8RI6L899 631 aa17.35■□□□□ 0.37
COL7A1-210ENST00000487017 E2F6O75461 281 aa17.35■□□□□ 0.37
COL7A1-210ENST00000487017 ADORA2BP29275 332 aa17.35■□□□□ 0.37
COL7A1-210ENST00000487017 CUL3Q13618 768 aa17.35■□□□□ 0.37
COL7A1-210ENST00000487017 RFX8Q6ZV50 586 aa17.35■□□□□ 0.37
COL7A1-210ENST00000487017 ARL8AQ96BM9 186 aa17.35■□□□□ 0.37
COL7A1-210ENST00000487017 IL17RAQ96F46 866 aa17.35■□□□□ 0.37
COL7A1-210ENST00000487017 PPCSQ9HAB8 311 aa17.35■□□□□ 0.37
COL7A1-210ENST00000487017 EIF3DO15371 548 aaKnown RBP eCLIP17.35■□□□□ 0.37
COL7A1-210ENST00000487017 KLRC1P26715 233 aa17.35■□□□□ 0.37
COL7A1-210ENST00000487017 LRRC31Q6UY01 552 aa17.35■□□□□ 0.37
COL7A1-210ENST00000487017 HACD3Q9P035 362 aa17.35■□□□□ 0.37
COL7A1-210ENST00000487017 NEU2Q9Y3R4 380 aa17.35■□□□□ 0.37
COL7A1-210ENST00000487017 FAM47DPA6NHR8 397 aa17.35■□□□□ 0.37
COL7A1-210ENST00000487017 PIK3R2O00459 728 aa17.35■□□□□ 0.37
COL7A1-210ENST00000487017 SPP2Q13103 211 aa17.35■□□□□ 0.37
COL7A1-210ENST00000487017 TSSK1BQ9BXA7 367 aa17.35■□□□□ 0.37
COL7A1-210ENST00000487017 TMEM117Q9H0C3 514 aa17.35■□□□□ 0.37
COL7A1-210ENST00000487017 MYL3P08590 195 aa17.35■□□□□ 0.37
COL7A1-210ENST00000487017 TTLL4Q14679 1199 aa17.35■□□□□ 0.37
COL7A1-210ENST00000487017 RARS2Q5T160 578 aaKnown RBP17.35■□□□□ 0.37
COL7A1-210ENST00000487017 RAPGEF5Q92565 580 aa17.35■□□□□ 0.37
COL7A1-210ENST00000487017 CEP19Q96LK0 163 aa17.35■□□□□ 0.37
COL7A1-210ENST00000487017 SCHIP1Q9P0W5 487 aaPredicted RBP17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms